Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
02:51:14 (17068): wrapper (7.7.26015): starting
02:51:14 (17068): wrapper: running run_atlas (--nthreads 8)
[2025-10-07 02:51:14] Arguments: --nthreads 8
[2025-10-07 02:51:14] Threads: 8
[2025-10-07 02:51:14] Checking for CVMFS
[2025-10-07 02:51:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-07 02:51:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-07 02:51:14] Running cvmfs_config stat atlas.cern.ch
[2025-10-07 02:51:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-07 02:51:14] 2.11.0.0 5323 69786 70868 151417 2 61 2551066 4096000 2751 130560 0 14039562 99.849 3789870 370 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-10-07 02:51:14] CVMFS is ok
[2025-10-07 02:51:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-07 02:51:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-07 02:51:14] Further information can be found at the LHC@home message board.
[2025-10-07 02:51:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-07 02:51:14] Checking for apptainer binary...
[2025-10-07 02:51:14] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-10-07 02:51:14] apptainer is not installed, using version from CVMFS
[2025-10-07 02:51:14] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-07 02:51:14] WARNING: Environment variable TMPDIR already has value [/tmp/job_10282869/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node045
[2025-10-07 02:51:14] apptainer works
[2025-10-07 02:51:14] Set ATHENA_PROC_NUMBER=8
[2025-10-07 02:51:14] Set ATHENA_CORE_NUMBER=8
[2025-10-07 02:51:14] Starting ATLAS job with PandaID=6832864100
[2025-10-07 02:51:14] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10282869/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-07 03:32:30]  *** The last 200 lines of the pilot log: ***
[2025-10-07 03:32:30]  replicas=None
[2025-10-07 03:32:30]  scope=mc23_13p6TeV
[2025-10-07 03:32:30]  status=None
[2025-10-07 03:32:30]  status_code=0
[2025-10-07 03:32:30]  storage_token=
[2025-10-07 03:32:30]  surl=/tmp/job_10282869/atlas/pilot/slots/0/PanDA_Pilot-6832864100/log.46376905._117430.job.log.tgz.1
[2025-10-07 03:32:30]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fa/f1/log.46376905._117430.job.log.tgz.1
[2025-10-07 03:32:30]  workdir=None
[2025-10-07 03:32:30] ]
[2025-10-07 03:32:30] 2025-10-07 01:31:21,072 | INFO     | transferring file log.46376905._117430.job.log.tgz.1 from /tmp/job_10282869/atlas/pilot/slots/0/PanDA_Pilot-6832864100/log.46376905._117430.job.log.tgz.1 to /tmp/j
[2025-10-07 03:32:30] 2025-10-07 01:31:21,072 | INFO     | executing command: /usr/bin/env mv /tmp/job_10282869/atlas/pilot/slots/0/PanDA_Pilot-6832864100/log.46376905._117430.job.log.tgz.1 /tmp/job_10282869/atlas/pilot/sl
[2025-10-07 03:32:30] 2025-10-07 01:31:21,080 | INFO     | adding to output.list: log.46376905._117430.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fa/f1/log.46376905._117430.job.log.tg
[2025-10-07 03:32:30] 2025-10-07 01:31:21,080 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-07 03:32:30] 2025-10-07 01:31:21,080 | INFO     | summary of transferred files:
[2025-10-07 03:32:30] 2025-10-07 01:31:21,080 | INFO     |  -- lfn=log.46376905._117430.job.log.tgz.1, status_code=0, status=transferred
[2025-10-07 03:32:30] 2025-10-07 01:31:21,080 | INFO     | stage-out finished correctly
[2025-10-07 03:32:30] 2025-10-07 01:31:21,897 | INFO     | time since job start (2402s) is within the limit (172800.0s)
[2025-10-07 03:32:30] 2025-10-07 01:31:22,787 | WARNING  | process 27478 can no longer be monitored (due to stat problems) - aborting
[2025-10-07 03:32:30] 2025-10-07 01:31:22,787 | INFO     | using path: /tmp/job_10282869/atlas/pilot/slots/0/PanDA_Pilot-6832864100/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 03:32:30] 2025-10-07 01:31:22,880 | INFO     | number of running child processes to parent process 27478: 1
[2025-10-07 03:32:30] 2025-10-07 01:31:22,880 | INFO     | maximum number of monitored processes: 6
[2025-10-07 03:32:30] 2025-10-07 01:31:23,902 | INFO     | time since job start (2404s) is within the limit (172800.0s)
[2025-10-07 03:32:30] 2025-10-07 01:31:24,196 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-07 03:32:30] 2025-10-07 01:31:24,244 | INFO     | job 6832864100 has state=finished
[2025-10-07 03:32:30] 2025-10-07 01:31:24,244 | INFO     | preparing for final server update for job 6832864100 in state='finished'
[2025-10-07 03:32:30] 2025-10-07 01:31:24,244 | INFO     | this job has now completed (state=finished)
[2025-10-07 03:32:30] 2025-10-07 01:31:24,244 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-07 03:32:30] 2025-10-07 01:31:24,244 | INFO     | log transfer has been attempted: DONE
[2025-10-07 03:32:30] 2025-10-07 01:31:24,245 | INFO     | job 6832864100 has finished - writing final server update
[2025-10-07 03:32:30] 2025-10-07 01:31:24,245 | INFO     | total number of processed events: 400 (read)
[2025-10-07 03:32:30] 2025-10-07 01:31:24,245 | INFO     | executing command: lscpu
[2025-10-07 03:32:30] 2025-10-07 01:31:24,275 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-07 03:32:30] 2025-10-07 01:31:25,383 | INFO     | monitor loop #182: job 0:6832864100 is in state 'finished'
[2025-10-07 03:32:30] 2025-10-07 01:31:25,383 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 03:32:30] 2025-10-07 01:31:25,841 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-07 03:32:30] 2025-10-07 01:31:25,845 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2485.819671875
[2025-10-07 03:32:30] 2025-10-07 01:31:25,851 | INFO     | using path: /tmp/job_10282869/atlas/pilot/slots/0/PanDA_Pilot-6832864100/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 03:32:30] 2025-10-07 01:31:25,851 | INFO     | extracted standard info from prmon json
[2025-10-07 03:32:30] 2025-10-07 01:31:25,851 | INFO     | extracted standard memory fields from prmon json
[2025-10-07 03:32:30] 2025-10-07 01:31:25,851 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-07 03:32:30] 2025-10-07 01:31:25,851 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-07 03:32:30] 2025-10-07 01:31:25,851 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-07 03:32:30] 2025-10-07 01:31:25,852 | INFO     | fitting pss+swap vs Time
[2025-10-07 03:32:30] 2025-10-07 01:31:25,852 | INFO     | sum of square deviations: 11133232.0
[2025-10-07 03:32:30] 2025-10-07 01:31:25,852 | INFO     | sum of deviations: -3285616709.0000005
[2025-10-07 03:32:30] 2025-10-07 01:31:25,852 | INFO     | mean x: 1759799577.0
[2025-10-07 03:32:30] 2025-10-07 01:31:25,852 | INFO     | mean y: 2764607.242424242
[2025-10-07 03:32:30] 2025-10-07 01:31:25,852 | INFO     | -- intersect: 519351224666.4896
[2025-10-07 03:32:30] 2025-10-07 01:31:25,852 | INFO     | intersect: 519351224666.4896
[2025-10-07 03:32:30] 2025-10-07 01:31:25,852 | INFO     | chi2: 0.065407760665208
[2025-10-07 03:32:30] 2025-10-07 01:31:25,852 | INFO     | -- intersect: 519351224666.4896
[2025-10-07 03:32:30] 2025-10-07 01:31:25,852 | INFO     | current memory leak: -295.12 B/s (using 33 data points, chi2=0.07)
[2025-10-07 03:32:30] 2025-10-07 01:31:25,853 | INFO     | could have reported an average CPU frequency of 2654 MHz (5 samples)
[2025-10-07 03:32:30] 2025-10-07 01:31:25,853 | INFO     | ..............................
[2025-10-07 03:32:30] 2025-10-07 01:31:25,853 | INFO     | . Timing measurements:
[2025-10-07 03:32:30] 2025-10-07 01:31:25,853 | INFO     | . get job = 0 s
[2025-10-07 03:32:30] 2025-10-07 01:31:25,853 | INFO     | . initial setup = 1 s
[2025-10-07 03:32:30] 2025-10-07 01:31:25,853 | INFO     | . payload setup = 2 s
[2025-10-07 03:32:30] 2025-10-07 01:31:25,853 | INFO     | . stage-in = 0 s
[2025-10-07 03:32:30] 2025-10-07 01:31:25,853 | INFO     | . payload execution = 2383 s
[2025-10-07 03:32:30] 2025-10-07 01:31:25,853 | INFO     | . stage-out = 0 s
[2025-10-07 03:32:30] 2025-10-07 01:31:25,853 | INFO     | . log creation = 0 s
[2025-10-07 03:32:30] 2025-10-07 01:31:25,853 | INFO     | ..............................
[2025-10-07 03:32:30] 2025-10-07 01:31:25,907 | INFO     | time since job start (2406s) is within the limit (172800.0s)
[2025-10-07 03:32:30] 2025-10-07 01:31:26,347 | INFO     | 
[2025-10-07 03:32:30] 2025-10-07 01:31:26,347 | INFO     | job summary report
[2025-10-07 03:32:30] 2025-10-07 01:31:26,348 | INFO     | --------------------------------------------------
[2025-10-07 03:32:30] 2025-10-07 01:31:26,348 | INFO     | PanDA job id: 6832864100
[2025-10-07 03:32:30] 2025-10-07 01:31:26,348 | INFO     | task id: 46376905
[2025-10-07 03:32:30] 2025-10-07 01:31:26,348 | INFO     | errors: (none)
[2025-10-07 03:32:30] 2025-10-07 01:31:26,348 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-07 03:32:30] 2025-10-07 01:31:26,348 | INFO     | pilot state: finished 
[2025-10-07 03:32:30] 2025-10-07 01:31:26,348 | INFO     | transexitcode: 0
[2025-10-07 03:32:30] 2025-10-07 01:31:26,348 | INFO     | exeerrorcode: 0
[2025-10-07 03:32:30] 2025-10-07 01:31:26,348 | INFO     | exeerrordiag: 
[2025-10-07 03:32:30] 2025-10-07 01:31:26,348 | INFO     | exitcode: 0
[2025-10-07 03:32:30] 2025-10-07 01:31:26,348 | INFO     | exitmsg: OK
[2025-10-07 03:32:30] 2025-10-07 01:31:26,348 | INFO     | cpuconsumptiontime: 17255 s
[2025-10-07 03:32:30] 2025-10-07 01:31:26,348 | INFO     | nevents: 400
[2025-10-07 03:32:30] 2025-10-07 01:31:26,348 | INFO     | neventsw: 0
[2025-10-07 03:32:30] 2025-10-07 01:31:26,348 | INFO     | pid: 27478
[2025-10-07 03:32:30] 2025-10-07 01:31:26,348 | INFO     | pgrp: 27478
[2025-10-07 03:32:30] 2025-10-07 01:31:26,348 | INFO     | corecount: 8
[2025-10-07 03:32:30] 2025-10-07 01:31:26,348 | INFO     | event service: False
[2025-10-07 03:32:30] 2025-10-07 01:31:26,348 | INFO     | sizes: {0: 2348895, 2: 2349157, 11: 2349185, 2389: 2383471, 2393: 2383471, 2394: 2383697}
[2025-10-07 03:32:30] 2025-10-07 01:31:26,348 | INFO     | --------------------------------------------------
[2025-10-07 03:32:30] 2025-10-07 01:31:26,348 | INFO     | 
[2025-10-07 03:32:30] 2025-10-07 01:31:26,348 | INFO     | executing command: ls -lF /tmp/job_10282869/atlas/pilot/slots/0
[2025-10-07 03:32:30] 2025-10-07 01:31:26,357 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-07 03:32:30] 2025-10-07 01:31:26,357 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-07 03:32:30] 2025-10-07 01:31:26,357 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-07 03:32:30] 2025-10-07 01:31:26,357 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-07 03:32:30] 2025-10-07 01:31:26,357 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-07 03:32:30] 2025-10-07 01:31:26,357 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-07 03:32:30] 2025-10-07 01:31:26,357 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-07 03:32:30] 2025-10-07 01:31:26,357 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-07 03:32:30] 2025-10-07 01:31:26,357 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-07 03:32:30] 2025-10-07 01:31:26,357 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-07 03:32:30] 2025-10-07 01:31:26,357 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-07 03:32:30] 2025-10-07 01:31:26,357 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-07 03:32:30] 2025-10-07 01:31:26,357 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-07 03:32:30] 2025-10-07 01:31:26,357 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-07 03:32:30] 2025-10-07 01:31:26,357 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-07 03:32:30] 2025-10-07 01:31:26,357 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-07 03:32:30] 2025-10-07 01:31:26,357 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-07 03:32:30] 2025-10-07 01:31:26,357 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-07 03:32:30] 2025-10-07 01:31:26,357 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-07 03:32:30] 2025-10-07 01:31:26,357 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-07 03:32:30] 2025-10-07 01:31:26,357 | INFO     | job 6832864100 has completed (purged errors)
[2025-10-07 03:32:30] 2025-10-07 01:31:26,357 | INFO     | overall cleanup function is called
[2025-10-07 03:32:30] 2025-10-07 01:31:27,363 | INFO     | --- collectZombieJob: --- 10, [27478]
[2025-10-07 03:32:30] 2025-10-07 01:31:27,363 | INFO     | zombie collector waiting for pid 27478
[2025-10-07 03:32:30] 2025-10-07 01:31:27,363 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-07 03:32:30] 2025-10-07 01:31:27,363 | INFO     | collected zombie processes
[2025-10-07 03:32:30] 2025-10-07 01:31:27,364 | INFO     | will attempt to kill all subprocesses of pid=27478
[2025-10-07 03:32:30] 2025-10-07 01:31:27,461 | INFO     | process IDs to be killed: [27478] (in reverse order)
[2025-10-07 03:32:30] 2025-10-07 01:31:27,493 | WARNING  | found no corresponding commands to process id(s)
[2025-10-07 03:32:30] 2025-10-07 01:31:27,493 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-07 03:32:30] 2025-10-07 01:31:27,497 | INFO     | did not find any defunct processes belonging to 27478
[2025-10-07 03:32:30] 2025-10-07 01:31:27,499 | INFO     | did not find any defunct processes belonging to 27478
[2025-10-07 03:32:30] 2025-10-07 01:31:27,500 | INFO     | ready for new job
[2025-10-07 03:32:30] 2025-10-07 01:31:27,500 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-07 03:32:30] 2025-10-07 01:31:27,500 | INFO     | ***************************************
[2025-10-07 03:32:30] 2025-10-07 01:31:27,500 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-07 03:32:30] 2025-10-07 01:31:27,500 | INFO     | ***************************************
[2025-10-07 03:32:30] 2025-10-07 01:31:27,500 | INFO     | 
[2025-10-07 03:32:30] 2025-10-07 01:31:27,514 | INFO     | architecture information:
[2025-10-07 03:32:30] 2025-10-07 01:31:27,515 | INFO     | executing command: cat /etc/os-release
[2025-10-07 03:32:30] 2025-10-07 01:31:27,520 | INFO     | cat /etc/os-release:
[2025-10-07 03:32:30] NAME="CentOS Linux"
[2025-10-07 03:32:30] VERSION="7 (Core)"
[2025-10-07 03:32:30] ID="centos"
[2025-10-07 03:32:30] ID_LIKE="rhel fedora"
[2025-10-07 03:32:30] VERSION_ID="7"
[2025-10-07 03:32:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-07 03:32:30] ANSI_COLOR="0;31"
[2025-10-07 03:32:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-07 03:32:30] HOME_URL="https://www.centos.org/"
[2025-10-07 03:32:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-07 03:32:30] 
[2025-10-07 03:32:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-07 03:32:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-07 03:32:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-07 03:32:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-07 03:32:30] 
[2025-10-07 03:32:30] 2025-10-07 01:31:27,520 | INFO     | ***************************************
[2025-10-07 03:32:30] 2025-10-07 01:31:28,023 | INFO     | executing command: df -mP /tmp/job_10282869/atlas/pilot/slots/0
[2025-10-07 03:32:30] 2025-10-07 01:31:28,028 | INFO     | sufficient remaining disk space (226472493056 B)
[2025-10-07 03:32:30] 2025-10-07 01:31:28,029 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-07 03:32:30] 2025-10-07 01:31:28,029 | INFO     | current server update state: UPDATING_FINAL
[2025-10-07 03:32:30] 2025-10-07 01:31:28,029 | INFO     | update_server=False
[2025-10-07 03:32:30] 2025-10-07 01:31:28,029 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-07 03:32:30] 2025-10-07 01:31:28,077 | INFO     | all payload control threads have been joined
[2025-10-07 03:32:30] 2025-10-07 01:31:28,248 | INFO     | all data control threads have been joined
[2025-10-07 03:32:30] 2025-10-07 01:31:28,891 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-07 03:32:30] 2025-10-07 01:31:28,891 | INFO     | aborting loop
[2025-10-07 03:32:30] 2025-10-07 01:31:28,950 | INFO     | all job control threads have been joined
[2025-10-07 03:32:30] 2025-10-07 01:31:29,034 | INFO     | [job] retrieve thread has finished
[2025-10-07 03:32:30] 2025-10-07 01:31:29,062 | INFO     | [job] create_data_payload thread has finished
[2025-10-07 03:32:30] 2025-10-07 01:31:29,083 | INFO     | [payload] control thread has finished
[2025-10-07 03:32:30] 2025-10-07 01:31:29,116 | INFO     | [payload] execute_payloads thread has finished
[2025-10-07 03:32:30] 2025-10-07 01:31:29,140 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-07 03:32:30] 2025-10-07 01:31:29,253 | INFO     | [data] control thread has finished
[2025-10-07 03:32:30] 2025-10-07 01:31:29,335 | INFO     | [payload] validate_pre thread has finished
[2025-10-07 03:32:30] 2025-10-07 01:31:29,454 | INFO     | [data] copytool_in thread has finished
[2025-10-07 03:32:30] 2025-10-07 01:31:29,661 | INFO     | [payload] validate_post thread has finished
[2025-10-07 03:32:30] 2025-10-07 01:31:29,792 | INFO     | [payload] failed_post thread has finished
[2025-10-07 03:32:30] 2025-10-07 01:31:29,896 | INFO     | [job] job monitor thread has finished
[2025-10-07 03:32:30] 2025-10-07 01:31:29,955 | INFO     | [job] control thread has finished
[2025-10-07 03:32:30] 2025-10-07 01:31:30,249 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-07 03:32:30] 2025-10-07 01:31:30,529 | INFO     | [job] validate thread has finished
[2025-10-07 03:32:30] 2025-10-07 01:31:30,913 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-07 03:32:30] 2025-10-07 01:31:31,145 | INFO     | [data] copytool_out thread has finished
[2025-10-07 03:32:30] 2025-10-07 01:31:31,919 | INFO     | [job] queue monitor thread has finished
[2025-10-07 03:32:30] 2025-10-07 01:31:34,255 | INFO     | [data] queue_monitor thread has finished
[2025-10-07 03:32:30] 2025-10-07 01:31:38,792 | INFO     | job.realtimelogging is not enabled
[2025-10-07 03:32:30] 2025-10-07 01:31:39,797 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-07 03:32:30] 2025-10-07 01:31:59,096 | INFO     | PID=20962 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-07 03:32:30] 2025-10-07 01:31:59,096 | INFO     | .. there are 2 such processes running
[2025-10-07 03:32:30] 2025-10-07 01:31:59,096 | INFO     | found 0 job(s) in 20 queues
[2025-10-07 03:32:30] 2025-10-07 01:31:59,096 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-07 03:32:30] 2025-10-07 01:31:59,097 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-07 03:32:30] 2025-10-07 01:32:22,954 | INFO     | [monitor] cgroup control has ended
[2025-10-07 03:32:30] 2025-10-07 01:32:24,840 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456060544768)>']
[2025-10-07 03:32:30] 2025-10-07 01:32:25,221 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-07 03:32:30] 2025-10-07 01:32:25,222 | INFO     | [monitor] control thread has ended
[2025-10-07 03:32:30] 2025-10-07 01:32:29,865 | INFO     | all workflow threads have been joined
[2025-10-07 03:32:30] 2025-10-07 01:32:29,865 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-07 03:32:30] 2025-10-07 01:32:29,865 | INFO     | traces error code: 0
[2025-10-07 03:32:30] 2025-10-07 01:32:29,865 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-07 03:32:30] 2025-10-07 01:32:29,917 [wrapper] ==== pilot stdout END ====
[2025-10-07 03:32:30] 2025-10-07 01:32:29,918 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-07 03:32:30] 2025-10-07 01:32:29,919 [wrapper] pilotpid: 20962
[2025-10-07 03:32:30] 2025-10-07 01:32:29,920 [wrapper] Pilot exit status: 0
[2025-10-07 03:32:30] 2025-10-07 01:32:29,924 [wrapper] pandaids: 6832864100
[2025-10-07 03:32:30] 2025-10-07 01:32:29,948 [wrapper] cleanup supervisor_pilot 10403 20963
[2025-10-07 03:32:30] 2025-10-07 01:32:29,949 [wrapper] Test setup, not cleaning
[2025-10-07 03:32:30] 2025-10-07 01:32:29,950 [wrapper] apfmon messages muted
[2025-10-07 03:32:30] 2025-10-07 01:32:29,951 [wrapper] ==== wrapper stdout END ====
[2025-10-07 03:32:30] 2025-10-07 01:32:29,952 [wrapper] ==== wrapper stderr END ====
[2025-10-07 03:32:30]  *** Error codes and diagnostics ***
[2025-10-07 03:32:30]     "exeErrorCode": 0,
[2025-10-07 03:32:30]     "exeErrorDiag": "",
[2025-10-07 03:32:30]     "pilotErrorCode": 0,
[2025-10-07 03:32:30]     "pilotErrorDiag": "",
[2025-10-07 03:32:30]  *** Listing of results directory ***
[2025-10-07 03:32:30] total 387180
[2025-10-07 03:32:30] -rw------- 1 mf493845 unix-user    552446 Oct  6 21:11 pilot3.tar.gz
[2025-10-07 03:32:30] -rw------- 1 mf493845 unix-user      5112 Oct  6 21:21 queuedata.json
[2025-10-07 03:32:30] -rwx------ 1 mf493845 unix-user     36292 Oct  6 21:23 runpilot2-wrapper.sh
[2025-10-07 03:32:30] -rw------- 1 mf493845 unix-user       100 Oct  7 01:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-07 03:32:30] -rwxr-xr-x 1 mf493845 unix-user      7986 Oct  7 01:56 run_atlas
[2025-10-07 03:32:30] -rw------- 1 mf493845 unix-user       105 Oct  7 01:56 job.xml
[2025-10-07 03:32:30] -rw-r--r-- 2 mf493845 unix-user     15120 Oct  7 02:51 start_atlas.sh
[2025-10-07 03:32:30] drwxrwx--x 2 mf493845 unix-user       100 Oct  7 02:51 shared
[2025-10-07 03:32:30] -rw-r--r-- 2 mf493845 unix-user    565602 Oct  7 02:51 input.tar.gz
[2025-10-07 03:32:30] -rw------- 1 mf493845 unix-user      6387 Oct  7 02:51 init_data.xml
[2025-10-07 03:32:30] -rw-r--r-- 2 mf493845 unix-user 216645155 Oct  7 02:51 EVNT.46376901._004360.pool.root.1
[2025-10-07 03:32:30] -rw------- 1 mf493845 unix-user         0 Oct  7 02:51 boinc_setup_complete
[2025-10-07 03:32:30] -rw------- 1 mf493845 unix-user      8192 Oct  7 02:51 boinc_mmap_file
[2025-10-07 03:32:30] -rw------- 1 mf493845 unix-user         0 Oct  7 02:51 boinc_lockfile
[2025-10-07 03:32:30] -rw------- 1 mf493845 unix-user      2520 Oct  7 02:51 pandaJob.out
[2025-10-07 03:32:30] -rw------- 1 mf493845 unix-user    974984 Oct  7 02:51 agis_schedconf.cvmfs.json
[2025-10-07 03:32:30] -rw------- 1 mf493845 unix-user   1560401 Oct  7 02:51 agis_ddmendpoints.agis.ALL.json
[2025-10-07 03:32:30] drwx------ 4 mf493845 unix-user       400 Oct  7 02:51 pilot3
[2025-10-07 03:32:30] -rw------- 1 mf493845 unix-user 174614373 Oct  7 03:30 HITS.46376905._117430.pool.root.1
[2025-10-07 03:32:30] -rw------- 1 mf493845 unix-user      1017 Oct  7 03:31 memory_monitor_summary.json
[2025-10-07 03:32:30] -rw------- 1 mf493845 unix-user    289544 Oct  7 03:31 log.46376905._117430.job.log.tgz.1
[2025-10-07 03:32:30] -rw------- 1 mf493845 unix-user      7781 Oct  7 03:31 heartbeat.json
[2025-10-07 03:32:30] -rw------- 1 mf493845 unix-user        95 Oct  7 03:31 pilot_heartbeat.json
[2025-10-07 03:32:30] -rw------- 1 mf493845 unix-user      4907 Oct  7 03:32 pilotlog.txt
[2025-10-07 03:32:30] -rw------- 1 mf493845 unix-user    389049 Oct  7 03:32 log.46376905._117430.job.log.1
[2025-10-07 03:32:30] -rw------- 1 mf493845 unix-user       357 Oct  7 03:32 output.list
[2025-10-07 03:32:30] -rw------- 1 mf493845 unix-user       620 Oct  7 03:32 runtime_log
[2025-10-07 03:32:30] -rw------- 1 mf493845 unix-user    696320 Oct  7 03:32 result.tar.gz
[2025-10-07 03:32:30] -rw------- 1 mf493845 unix-user       643 Oct  7 03:32 voDMDm7y5P8n9Rq4apOajLDm4fhM0noT9bVof3QYDmZqJMDmrAxSjn.diag
[2025-10-07 03:32:30] -rw------- 1 mf493845 unix-user      9076 Oct  7 03:32 runtime_log.err
[2025-10-07 03:32:30] -rw------- 1 mf493845 unix-user     22294 Oct  7 03:32 stderr.txt
[2025-10-07 03:32:30] HITS file was successfully produced:
[2025-10-07 03:32:30] -rw------- 1 mf493845 unix-user 174614373 Oct  7 03:30 shared/HITS.pool.root.1
[2025-10-07 03:32:30]  *** Contents of shared directory: ***
[2025-10-07 03:32:30] total 383344
[2025-10-07 03:32:30] -rw-r--r-- 2 mf493845 unix-user     15120 Oct  7 02:51 start_atlas.sh
[2025-10-07 03:32:30] -rw-r--r-- 2 mf493845 unix-user    565602 Oct  7 02:51 input.tar.gz
[2025-10-07 03:32:30] -rw-r--r-- 2 mf493845 unix-user 216645155 Oct  7 02:51 ATLAS.root_0
[2025-10-07 03:32:30] -rw------- 1 mf493845 unix-user 174614373 Oct  7 03:30 HITS.pool.root.1
[2025-10-07 03:32:30] -rw------- 1 mf493845 unix-user    696320 Oct  7 03:32 result.tar.gz
03:32:31 (17068): run_atlas exited; CPU time 17285.350547
03:32:31 (17068): called boinc_finish(0)

</stderr_txt>
]]>

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