Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
02:16:25 (14438): wrapper (7.7.26015): starting
02:16:25 (14438): wrapper: running run_atlas (--nthreads 8)
[2025-10-07 02:16:25] Arguments: --nthreads 8
[2025-10-07 02:16:25] Threads: 8
[2025-10-07 02:16:25] Checking for CVMFS
[2025-10-07 02:16:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-07 02:16:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-07 02:16:25] Running cvmfs_config stat atlas.cern.ch
[2025-10-07 02:16:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-07 02:16:25] 2.11.0.0 19029 26634 74348 151416 2 188 3344412 4096001 4614 130560 0 6734699 99.891 1443299 221 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-10-07 02:16:25] CVMFS is ok
[2025-10-07 02:16:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-07 02:16:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-07 02:16:25] Further information can be found at the LHC@home message board.
[2025-10-07 02:16:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-07 02:16:25] Checking for apptainer binary...
[2025-10-07 02:16:25] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-10-07 02:16:25] apptainer is not installed, using version from CVMFS
[2025-10-07 02:16:25] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-07 02:16:26] WARNING: Environment variable TMPDIR already has value [/tmp/job_10281330/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node160
[2025-10-07 02:16:26] apptainer works
[2025-10-07 02:16:26] Set ATHENA_PROC_NUMBER=8
[2025-10-07 02:16:26] Set ATHENA_CORE_NUMBER=8
[2025-10-07 02:16:26] Starting ATLAS job with PandaID=6832861997
[2025-10-07 02:16:26] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10281330/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-07 02:58:40]  *** The last 200 lines of the pilot log: ***
[2025-10-07 02:58:40]  is_altstaged=None
[2025-10-07 02:58:40]  is_tar=False
[2025-10-07 02:58:40]  lfn=log.46376905._116601.job.log.tgz.1
[2025-10-07 02:58:40]  mtime=0
[2025-10-07 02:58:40]  protocol_id=None
[2025-10-07 02:58:40]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-07 02:58:40]  replicas=None
[2025-10-07 02:58:40]  scope=mc23_13p6TeV
[2025-10-07 02:58:40]  status=None
[2025-10-07 02:58:40]  status_code=0
[2025-10-07 02:58:40]  storage_token=
[2025-10-07 02:58:40]  surl=/tmp/job_10281330/atlas/pilot/slots/0/PanDA_Pilot-6832861997/log.46376905._116601.job.log.tgz.1
[2025-10-07 02:58:40]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6a/1b/log.46376905._116601.job.log.tgz.1
[2025-10-07 02:58:40]  workdir=None
[2025-10-07 02:58:40] ]
[2025-10-07 02:58:40] 2025-10-07 00:57:42,884 | INFO     | transferring file log.46376905._116601.job.log.tgz.1 from /tmp/job_10281330/atlas/pilot/slots/0/PanDA_Pilot-6832861997/log.46376905._116601.job.log.tgz.1 to /tmp/j
[2025-10-07 02:58:40] 2025-10-07 00:57:42,884 | INFO     | executing command: /usr/bin/env mv /tmp/job_10281330/atlas/pilot/slots/0/PanDA_Pilot-6832861997/log.46376905._116601.job.log.tgz.1 /tmp/job_10281330/atlas/pilot/sl
[2025-10-07 02:58:40] 2025-10-07 00:57:42,893 | INFO     | adding to output.list: log.46376905._116601.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6a/1b/log.46376905._116601.job.log.tg
[2025-10-07 02:58:40] 2025-10-07 00:57:42,893 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-07 02:58:40] 2025-10-07 00:57:42,893 | INFO     | summary of transferred files:
[2025-10-07 02:58:40] 2025-10-07 00:57:42,893 | INFO     |  -- lfn=log.46376905._116601.job.log.tgz.1, status_code=0, status=transferred
[2025-10-07 02:58:40] 2025-10-07 00:57:42,893 | INFO     | stage-out finished correctly
[2025-10-07 02:58:40] 2025-10-07 00:57:43,393 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-07 02:58:40] 2025-10-07 00:57:43,440 | INFO     | job 6832861997 has state=finished
[2025-10-07 02:58:40] 2025-10-07 00:57:43,440 | INFO     | preparing for final server update for job 6832861997 in state='finished'
[2025-10-07 02:58:40] 2025-10-07 00:57:43,440 | INFO     | this job has now completed (state=finished)
[2025-10-07 02:58:40] 2025-10-07 00:57:43,440 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-07 02:58:40] 2025-10-07 00:57:43,440 | INFO     | log transfer has been attempted: DONE
[2025-10-07 02:58:40] 2025-10-07 00:57:43,440 | INFO     | job 6832861997 has finished - writing final server update
[2025-10-07 02:58:40] 2025-10-07 00:57:43,440 | INFO     | total number of processed events: 400 (read)
[2025-10-07 02:58:40] 2025-10-07 00:57:43,440 | INFO     | executing command: lscpu
[2025-10-07 02:58:40] 2025-10-07 00:57:43,471 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-07 02:58:40] 2025-10-07 00:57:44,578 | INFO     | monitor loop #186: job 0:6832861997 is in state 'finished'
[2025-10-07 02:58:40] 2025-10-07 00:57:44,579 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 02:58:40] 2025-10-07 00:57:44,585 | INFO     | time since job start (2473s) is within the limit (172800.0s)
[2025-10-07 02:58:40] 2025-10-07 00:57:45,196 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-07 02:58:40] 2025-10-07 00:57:45,200 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2364.762453125
[2025-10-07 02:58:40] 2025-10-07 00:57:45,206 | INFO     | using path: /tmp/job_10281330/atlas/pilot/slots/0/PanDA_Pilot-6832861997/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 02:58:40] 2025-10-07 00:57:45,206 | INFO     | extracted standard info from prmon json
[2025-10-07 02:58:40] 2025-10-07 00:57:45,206 | INFO     | extracted standard memory fields from prmon json
[2025-10-07 02:58:40] 2025-10-07 00:57:45,206 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-07 02:58:40] 2025-10-07 00:57:45,206 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-07 02:58:40] 2025-10-07 00:57:45,206 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-07 02:58:40] 2025-10-07 00:57:45,207 | INFO     | fitting pss+swap vs Time
[2025-10-07 02:58:40] 2025-10-07 00:57:45,207 | INFO     | sum of square deviations: 12176972.5
[2025-10-07 02:58:40] 2025-10-07 00:57:45,207 | INFO     | sum of deviations: 468507450.0
[2025-10-07 02:58:40] 2025-10-07 00:57:45,207 | INFO     | mean x: 1759797519.5
[2025-10-07 02:58:40] 2025-10-07 00:57:45,207 | INFO     | mean y: 2690636.7647058824
[2025-10-07 02:58:40] 2025-10-07 00:57:45,207 | INFO     | -- intersect: -67705292474.57682
[2025-10-07 02:58:40] 2025-10-07 00:57:45,207 | INFO     | intersect: -67705292474.57682
[2025-10-07 02:58:40] 2025-10-07 00:57:45,207 | INFO     | chi2: 0.001730459171402144
[2025-10-07 02:58:40] 2025-10-07 00:57:45,207 | INFO     | -- intersect: -67705292474.57682
[2025-10-07 02:58:40] 2025-10-07 00:57:45,208 | INFO     | current memory leak: 38.47 B/s (using 34 data points, chi2=0.00)
[2025-10-07 02:58:40] 2025-10-07 00:57:45,208 | INFO     | could have reported an average CPU frequency of 2766 MHz (5 samples)
[2025-10-07 02:58:40] 2025-10-07 00:57:45,208 | INFO     | ..............................
[2025-10-07 02:58:40] 2025-10-07 00:57:45,208 | INFO     | . Timing measurements:
[2025-10-07 02:58:40] 2025-10-07 00:57:45,208 | INFO     | . get job = 0 s
[2025-10-07 02:58:40] 2025-10-07 00:57:45,208 | INFO     | . initial setup = 1 s
[2025-10-07 02:58:40] 2025-10-07 00:57:45,208 | INFO     | . payload setup = 2 s
[2025-10-07 02:58:40] 2025-10-07 00:57:45,208 | INFO     | . stage-in = 0 s
[2025-10-07 02:58:40] 2025-10-07 00:57:45,208 | INFO     | . payload execution = 2452 s
[2025-10-07 02:58:40] 2025-10-07 00:57:45,208 | INFO     | . stage-out = 0 s
[2025-10-07 02:58:40] 2025-10-07 00:57:45,208 | INFO     | . log creation = 0 s
[2025-10-07 02:58:40] 2025-10-07 00:57:45,208 | INFO     | ..............................
[2025-10-07 02:58:40] 2025-10-07 00:57:45,710 | INFO     | PID=19719 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-07 02:58:40] 2025-10-07 00:57:45,745 | INFO     | 
[2025-10-07 02:58:40] 2025-10-07 00:57:45,745 | INFO     | job summary report
[2025-10-07 02:58:40] 2025-10-07 00:57:45,745 | INFO     | --------------------------------------------------
[2025-10-07 02:58:40] 2025-10-07 00:57:45,745 | INFO     | PanDA job id: 6832861997
[2025-10-07 02:58:40] 2025-10-07 00:57:45,745 | INFO     | task id: 46376905
[2025-10-07 02:58:40] 2025-10-07 00:57:45,745 | INFO     | errors: (none)
[2025-10-07 02:58:40] 2025-10-07 00:57:45,745 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-07 02:58:40] 2025-10-07 00:57:45,745 | INFO     | pilot state: finished 
[2025-10-07 02:58:40] 2025-10-07 00:57:45,745 | INFO     | transexitcode: 0
[2025-10-07 02:58:40] 2025-10-07 00:57:45,745 | INFO     | exeerrorcode: 0
[2025-10-07 02:58:40] 2025-10-07 00:57:45,745 | INFO     | exeerrordiag: 
[2025-10-07 02:58:40] 2025-10-07 00:57:45,745 | INFO     | exitcode: 0
[2025-10-07 02:58:40] 2025-10-07 00:57:45,745 | INFO     | exitmsg: OK
[2025-10-07 02:58:40] 2025-10-07 00:57:45,745 | INFO     | cpuconsumptiontime: 18111 s
[2025-10-07 02:58:40] 2025-10-07 00:57:45,745 | INFO     | nevents: 400
[2025-10-07 02:58:40] 2025-10-07 00:57:45,745 | INFO     | neventsw: 0
[2025-10-07 02:58:40] 2025-10-07 00:57:45,745 | INFO     | pid: 31168
[2025-10-07 02:58:40] 2025-10-07 00:57:45,745 | INFO     | pgrp: 31168
[2025-10-07 02:58:40] 2025-10-07 00:57:45,745 | INFO     | corecount: 8
[2025-10-07 02:58:40] 2025-10-07 00:57:45,745 | INFO     | event service: False
[2025-10-07 02:58:40] 2025-10-07 00:57:45,745 | INFO     | sizes: {0: 2348895, 2: 2349157, 11: 2349185, 2458: 2374448, 2459: 2383531, 2460: 2383531, 2462: 2383885}
[2025-10-07 02:58:40] 2025-10-07 00:57:45,745 | INFO     | --------------------------------------------------
[2025-10-07 02:58:40] 2025-10-07 00:57:45,745 | INFO     | 
[2025-10-07 02:58:40] 2025-10-07 00:57:45,745 | INFO     | executing command: ls -lF /tmp/job_10281330/atlas/pilot/slots/0
[2025-10-07 02:58:40] 2025-10-07 00:57:45,754 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-07 02:58:40] 2025-10-07 00:57:45,754 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-07 02:58:40] 2025-10-07 00:57:45,754 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-07 02:58:40] 2025-10-07 00:57:45,754 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-07 02:58:40] 2025-10-07 00:57:45,754 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-07 02:58:40] 2025-10-07 00:57:45,754 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-07 02:58:40] 2025-10-07 00:57:45,754 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-07 02:58:40] 2025-10-07 00:57:45,754 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-07 02:58:40] 2025-10-07 00:57:45,754 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-07 02:58:40] 2025-10-07 00:57:45,754 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-07 02:58:40] 2025-10-07 00:57:45,754 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-07 02:58:40] 2025-10-07 00:57:45,754 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-07 02:58:40] 2025-10-07 00:57:45,754 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-07 02:58:40] 2025-10-07 00:57:45,754 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-07 02:58:40] 2025-10-07 00:57:45,754 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-07 02:58:40] 2025-10-07 00:57:45,754 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-07 02:58:40] 2025-10-07 00:57:45,755 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-07 02:58:40] 2025-10-07 00:57:45,755 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-07 02:58:40] 2025-10-07 00:57:45,755 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-07 02:58:40] 2025-10-07 00:57:45,755 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-07 02:58:40] 2025-10-07 00:57:45,755 | INFO     | job 6832861997 has completed (purged errors)
[2025-10-07 02:58:40] 2025-10-07 00:57:45,755 | INFO     | overall cleanup function is called
[2025-10-07 02:58:40] 2025-10-07 00:57:46,761 | INFO     | --- collectZombieJob: --- 10, [31168]
[2025-10-07 02:58:40] 2025-10-07 00:57:46,761 | INFO     | zombie collector waiting for pid 31168
[2025-10-07 02:58:40] 2025-10-07 00:57:46,761 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-07 02:58:40] 2025-10-07 00:57:46,761 | INFO     | collected zombie processes
[2025-10-07 02:58:40] 2025-10-07 00:57:46,761 | INFO     | will attempt to kill all subprocesses of pid=31168
[2025-10-07 02:58:40] 2025-10-07 00:57:46,853 | INFO     | process IDs to be killed: [31168] (in reverse order)
[2025-10-07 02:58:40] 2025-10-07 00:57:46,883 | WARNING  | found no corresponding commands to process id(s)
[2025-10-07 02:58:40] 2025-10-07 00:57:46,883 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-07 02:58:40] 2025-10-07 00:57:46,887 | INFO     | did not find any defunct processes belonging to 31168
[2025-10-07 02:58:40] 2025-10-07 00:57:46,890 | INFO     | did not find any defunct processes belonging to 31168
[2025-10-07 02:58:40] 2025-10-07 00:57:46,890 | INFO     | ready for new job
[2025-10-07 02:58:40] 2025-10-07 00:57:46,890 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-07 02:58:40] 2025-10-07 00:57:46,890 | INFO     | ***************************************
[2025-10-07 02:58:40] 2025-10-07 00:57:46,890 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-07 02:58:40] 2025-10-07 00:57:46,891 | INFO     | ***************************************
[2025-10-07 02:58:40] 2025-10-07 00:57:46,891 | INFO     | 
[2025-10-07 02:58:40] 2025-10-07 00:57:46,904 | INFO     | architecture information:
[2025-10-07 02:58:40] 2025-10-07 00:57:46,904 | INFO     | executing command: cat /etc/os-release
[2025-10-07 02:58:40] 2025-10-07 00:57:46,910 | INFO     | cat /etc/os-release:
[2025-10-07 02:58:40] NAME="CentOS Linux"
[2025-10-07 02:58:40] VERSION="7 (Core)"
[2025-10-07 02:58:40] ID="centos"
[2025-10-07 02:58:40] ID_LIKE="rhel fedora"
[2025-10-07 02:58:40] VERSION_ID="7"
[2025-10-07 02:58:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-07 02:58:40] ANSI_COLOR="0;31"
[2025-10-07 02:58:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-07 02:58:40] HOME_URL="https://www.centos.org/"
[2025-10-07 02:58:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-07 02:58:40] 
[2025-10-07 02:58:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-07 02:58:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-07 02:58:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-07 02:58:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-07 02:58:40] 
[2025-10-07 02:58:40] 2025-10-07 00:57:46,910 | INFO     | ***************************************
[2025-10-07 02:58:40] 2025-10-07 00:57:47,413 | INFO     | executing command: df -mP /tmp/job_10281330/atlas/pilot/slots/0
[2025-10-07 02:58:40] 2025-10-07 00:57:47,419 | INFO     | sufficient remaining disk space (225505705984 B)
[2025-10-07 02:58:40] 2025-10-07 00:57:47,419 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-07 02:58:40] 2025-10-07 00:57:47,419 | INFO     | current server update state: UPDATING_FINAL
[2025-10-07 02:58:40] 2025-10-07 00:57:47,419 | INFO     | update_server=False
[2025-10-07 02:58:40] 2025-10-07 00:57:47,419 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-07 02:58:40] 2025-10-07 00:57:47,563 | INFO     | all job control threads have been joined
[2025-10-07 02:58:40] 2025-10-07 00:57:48,010 | INFO     | all data control threads have been joined
[2025-10-07 02:58:40] 2025-10-07 00:57:48,052 | INFO     | all payload control threads have been joined
[2025-10-07 02:58:40] 2025-10-07 00:57:48,086 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-07 02:58:40] 2025-10-07 00:57:48,086 | INFO     | aborting loop
[2025-10-07 02:58:40] 2025-10-07 00:57:48,424 | INFO     | [job] retrieve thread has finished
[2025-10-07 02:58:40] 2025-10-07 00:57:48,450 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-07 02:58:40] 2025-10-07 00:57:48,453 | INFO     | [payload] validate_pre thread has finished
[2025-10-07 02:58:40] 2025-10-07 00:57:48,568 | INFO     | [job] control thread has finished
[2025-10-07 02:58:40] 2025-10-07 00:57:48,755 | INFO     | job.realtimelogging is not enabled
[2025-10-07 02:58:40] 2025-10-07 00:57:49,009 | INFO     | [payload] failed_post thread has finished
[2025-10-07 02:58:40] 2025-10-07 00:57:49,015 | INFO     | [data] control thread has finished
[2025-10-07 02:58:40] 2025-10-07 00:57:49,023 | INFO     | [data] copytool_in thread has finished
[2025-10-07 02:58:40] 2025-10-07 00:57:49,051 | INFO     | [payload] execute_payloads thread has finished
[2025-10-07 02:58:40] 2025-10-07 00:57:49,057 | INFO     | [payload] control thread has finished
[2025-10-07 02:58:40] 2025-10-07 00:57:49,092 | INFO     | [job] job monitor thread has finished
[2025-10-07 02:58:40] 2025-10-07 00:57:49,444 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-07 02:58:40] 2025-10-07 00:57:49,515 | INFO     | [payload] validate_post thread has finished
[2025-10-07 02:58:40] 2025-10-07 00:57:49,760 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-07 02:58:40] 2025-10-07 00:57:49,782 | INFO     | [job] validate thread has finished
[2025-10-07 02:58:40] 2025-10-07 00:57:49,839 | INFO     | [job] create_data_payload thread has finished
[2025-10-07 02:58:40] 2025-10-07 00:57:50,268 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-07 02:58:40] 2025-10-07 00:57:50,455 | INFO     | [data] copytool_out thread has finished
[2025-10-07 02:58:40] 2025-10-07 00:57:51,273 | INFO     | [job] queue monitor thread has finished
[2025-10-07 02:58:40] 2025-10-07 00:57:53,450 | INFO     | [data] queue_monitor thread has finished
[2025-10-07 02:58:40] 2025-10-07 00:58:17,889 | INFO     | PID=19719 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-07 02:58:40] 2025-10-07 00:58:17,889 | INFO     | found 0 job(s) in 20 queues
[2025-10-07 02:58:40] 2025-10-07 00:58:17,890 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-07 02:58:40] 2025-10-07 00:58:17,890 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-07 02:58:40] 2025-10-07 00:58:34,601 | INFO     | [monitor] cgroup control has ended
[2025-10-07 02:58:40] 2025-10-07 00:58:35,804 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456064747264)>']
[2025-10-07 02:58:40] 2025-10-07 00:58:35,980 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-07 02:58:40] 2025-10-07 00:58:35,980 | INFO     | [monitor] control thread has ended
[2025-10-07 02:58:40] 2025-10-07 00:58:40,829 | INFO     | all workflow threads have been joined
[2025-10-07 02:58:40] 2025-10-07 00:58:40,829 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-07 02:58:40] 2025-10-07 00:58:40,829 | INFO     | traces error code: 0
[2025-10-07 02:58:40] 2025-10-07 00:58:40,830 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-07 02:58:40] 2025-10-07 00:58:40,879 [wrapper] ==== pilot stdout END ====
[2025-10-07 02:58:40] 2025-10-07 00:58:40,881 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-07 02:58:40] 2025-10-07 00:58:40,882 [wrapper] pilotpid: 19719
[2025-10-07 02:58:40] 2025-10-07 00:58:40,883 [wrapper] Pilot exit status: 0
[2025-10-07 02:58:40] 2025-10-07 00:58:40,887 [wrapper] pandaids: 6832861997
[2025-10-07 02:58:40] 2025-10-07 00:58:40,907 [wrapper] cleanup supervisor_pilot 17230 19720
[2025-10-07 02:58:40] 2025-10-07 00:58:40,908 [wrapper] Test setup, not cleaning
[2025-10-07 02:58:40] 2025-10-07 00:58:40,909 [wrapper] apfmon messages muted
[2025-10-07 02:58:40] 2025-10-07 00:58:40,910 [wrapper] ==== wrapper stdout END ====
[2025-10-07 02:58:40] 2025-10-07 00:58:40,911 [wrapper] ==== wrapper stderr END ====
[2025-10-07 02:58:40]  *** Error codes and diagnostics ***
[2025-10-07 02:58:40]     "exeErrorCode": 0,
[2025-10-07 02:58:40]     "exeErrorDiag": "",
[2025-10-07 02:58:40]     "pilotErrorCode": 0,
[2025-10-07 02:58:40]     "pilotErrorDiag": "",
[2025-10-07 02:58:40]  *** Listing of results directory ***
[2025-10-07 02:58:41] total 387580
[2025-10-07 02:58:41] -rw------- 1 mf493845 unix-user      5112 Oct  6 20:49 queuedata.json
[2025-10-07 02:58:41] -rwx------ 1 mf493845 unix-user     36292 Oct  6 20:52 runpilot2-wrapper.sh
[2025-10-07 02:58:41] -rw------- 1 mf493845 unix-user    552446 Oct  6 20:52 pilot3.tar.gz
[2025-10-07 02:58:41] -rw------- 1 mf493845 unix-user       100 Oct  7 01:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-07 02:58:41] -rwxr-xr-x 1 mf493845 unix-user      7986 Oct  7 01:22 run_atlas
[2025-10-07 02:58:41] -rw------- 1 mf493845 unix-user       105 Oct  7 01:22 job.xml
[2025-10-07 02:58:41] -rw-r--r-- 2 mf493845 unix-user     15120 Oct  7 02:16 start_atlas.sh
[2025-10-07 02:58:41] drwxrwx--x 2 mf493845 unix-user       100 Oct  7 02:16 shared
[2025-10-07 02:58:41] -rw-r--r-- 2 mf493845 unix-user    565595 Oct  7 02:16 input.tar.gz
[2025-10-07 02:58:41] -rw------- 1 mf493845 unix-user      6389 Oct  7 02:16 init_data.xml
[2025-10-07 02:58:41] -rw-r--r-- 2 mf493845 unix-user 213019069 Oct  7 02:16 EVNT.46376901._004327.pool.root.1
[2025-10-07 02:58:41] -rw------- 1 mf493845 unix-user         0 Oct  7 02:16 boinc_setup_complete
[2025-10-07 02:58:41] -rw------- 1 mf493845 unix-user      8192 Oct  7 02:16 boinc_mmap_file
[2025-10-07 02:58:41] -rw------- 1 mf493845 unix-user         0 Oct  7 02:16 boinc_lockfile
[2025-10-07 02:58:41] -rw------- 1 mf493845 unix-user      2520 Oct  7 02:16 pandaJob.out
[2025-10-07 02:58:41] -rw------- 1 mf493845 unix-user    975012 Oct  7 02:16 agis_schedconf.cvmfs.json
[2025-10-07 02:58:41] -rw------- 1 mf493845 unix-user   1560401 Oct  7 02:16 agis_ddmendpoints.agis.ALL.json
[2025-10-07 02:58:41] drwx------ 4 mf493845 unix-user       400 Oct  7 02:16 pilot3
[2025-10-07 02:58:41] -rw------- 1 mf493845 unix-user 178643659 Oct  7 02:57 HITS.46376905._116601.pool.root.1
[2025-10-07 02:58:41] -rw------- 1 mf493845 unix-user      1020 Oct  7 02:57 memory_monitor_summary.json
[2025-10-07 02:58:41] -rw------- 1 mf493845 unix-user    284379 Oct  7 02:57 log.46376905._116601.job.log.tgz.1
[2025-10-07 02:58:41] -rw------- 1 mf493845 unix-user      7782 Oct  7 02:57 heartbeat.json
[2025-10-07 02:58:41] -rw------- 1 mf493845 unix-user        95 Oct  7 02:58 pilot_heartbeat.json
[2025-10-07 02:58:41] -rw------- 1 mf493845 unix-user      4832 Oct  7 02:58 pilotlog.txt
[2025-10-07 02:58:41] -rw------- 1 mf493845 unix-user    394923 Oct  7 02:58 log.46376905._116601.job.log.1
[2025-10-07 02:58:41] -rw------- 1 mf493845 unix-user       357 Oct  7 02:58 output.list
[2025-10-07 02:58:41] -rw------- 1 mf493845 unix-user       620 Oct  7 02:58 runtime_log
[2025-10-07 02:58:41] -rw------- 1 mf493845 unix-user    696320 Oct  7 02:58 result.tar.gz
[2025-10-07 02:58:41] -rw------- 1 mf493845 unix-user      9076 Oct  7 02:58 runtime_log.err
[2025-10-07 02:58:41] -rw------- 1 mf493845 unix-user       642 Oct  7 02:58 KxCMDm9U5P8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmVIUNDmxg3Jxn.diag
[2025-10-07 02:58:41] -rw------- 1 mf493845 unix-user     22023 Oct  7 02:58 stderr.txt
[2025-10-07 02:58:41] HITS file was successfully produced:
[2025-10-07 02:58:41] -rw------- 1 mf493845 unix-user 178643659 Oct  7 02:57 shared/HITS.pool.root.1
[2025-10-07 02:58:41]  *** Contents of shared directory: ***
[2025-10-07 02:58:41] total 383740
[2025-10-07 02:58:41] -rw-r--r-- 2 mf493845 unix-user     15120 Oct  7 02:16 start_atlas.sh
[2025-10-07 02:58:41] -rw-r--r-- 2 mf493845 unix-user    565595 Oct  7 02:16 input.tar.gz
[2025-10-07 02:58:41] -rw-r--r-- 2 mf493845 unix-user 213019069 Oct  7 02:16 ATLAS.root_0
[2025-10-07 02:58:41] -rw------- 1 mf493845 unix-user 178643659 Oct  7 02:57 HITS.pool.root.1
[2025-10-07 02:58:41] -rw------- 1 mf493845 unix-user    696320 Oct  7 02:58 result.tar.gz
02:58:42 (14438): run_atlas exited; CPU time 18144.781978
02:58:42 (14438): called boinc_finish(0)

</stderr_txt>
]]>

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