Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
02:17:02 (23895): wrapper (7.7.26015): starting
02:17:02 (23895): wrapper: running run_atlas (--nthreads 8)
[2025-10-07 02:17:02] Arguments: --nthreads 8
[2025-10-07 02:17:02] Threads: 8
[2025-10-07 02:17:02] Checking for CVMFS
[2025-10-07 02:17:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-07 02:17:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-07 02:17:02] Running cvmfs_config stat atlas.cern.ch
[2025-10-07 02:17:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-07 02:17:03] 2.11.0.0 23544 26637 62276 151417 3 17 3931138 4096001 1008 130560 1 3252775 99.777 1439863 230 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-10-07 02:17:03] CVMFS is ok
[2025-10-07 02:17:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-07 02:17:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-07 02:17:03] Further information can be found at the LHC@home message board.
[2025-10-07 02:17:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-07 02:17:03] Checking for apptainer binary...
[2025-10-07 02:17:03] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-10-07 02:17:03] apptainer is not installed, using version from CVMFS
[2025-10-07 02:17:03] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-07 02:17:03] WARNING: Environment variable TMPDIR already has value [/tmp/job_10281381/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node070
[2025-10-07 02:17:03] apptainer works
[2025-10-07 02:17:03] Set ATHENA_PROC_NUMBER=8
[2025-10-07 02:17:03] Set ATHENA_CORE_NUMBER=8
[2025-10-07 02:17:03] Starting ATLAS job with PandaID=6832861864
[2025-10-07 02:17:03] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10281381/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-07 02:59:16]  *** The last 200 lines of the pilot log: ***
[2025-10-07 02:59:16]  protocol_id=None
[2025-10-07 02:59:16]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-07 02:59:16]  replicas=None
[2025-10-07 02:59:16]  scope=mc23_13p6TeV
[2025-10-07 02:59:16]  status=None
[2025-10-07 02:59:16]  status_code=0
[2025-10-07 02:59:16]  storage_token=
[2025-10-07 02:59:16]  surl=/tmp/job_10281381/atlas/pilot/slots/0/PanDA_Pilot-6832861864/log.46376905._116468.job.log.tgz.1
[2025-10-07 02:59:16]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/37/4e/log.46376905._116468.job.log.tgz.1
[2025-10-07 02:59:16]  workdir=None
[2025-10-07 02:59:16] ]
[2025-10-07 02:59:16] 2025-10-07 00:58:12,118 | INFO     | transferring file log.46376905._116468.job.log.tgz.1 from /tmp/job_10281381/atlas/pilot/slots/0/PanDA_Pilot-6832861864/log.46376905._116468.job.log.tgz.1 to /tmp/j
[2025-10-07 02:59:16] 2025-10-07 00:58:12,118 | INFO     | executing command: /usr/bin/env mv /tmp/job_10281381/atlas/pilot/slots/0/PanDA_Pilot-6832861864/log.46376905._116468.job.log.tgz.1 /tmp/job_10281381/atlas/pilot/sl
[2025-10-07 02:59:16] 2025-10-07 00:58:12,126 | INFO     | adding to output.list: log.46376905._116468.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/37/4e/log.46376905._116468.job.log.tg
[2025-10-07 02:59:16] 2025-10-07 00:58:12,127 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-07 02:59:16] 2025-10-07 00:58:12,127 | INFO     | summary of transferred files:
[2025-10-07 02:59:16] 2025-10-07 00:58:12,127 | INFO     |  -- lfn=log.46376905._116468.job.log.tgz.1, status_code=0, status=transferred
[2025-10-07 02:59:16] 2025-10-07 00:58:12,127 | INFO     | stage-out finished correctly
[2025-10-07 02:59:16] 2025-10-07 00:58:12,901 | INFO     | time since job start (2465s) is within the limit (172800.0s)
[2025-10-07 02:59:16] 2025-10-07 00:58:14,290 | INFO     | monitor loop #184: job 0:6832861864 is in state 'finished'
[2025-10-07 02:59:16] 2025-10-07 00:58:14,290 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 02:59:16] 2025-10-07 00:58:14,907 | INFO     | time since job start (2467s) is within the limit (172800.0s)
[2025-10-07 02:59:16] 2025-10-07 00:58:15,584 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-07 02:59:16] 2025-10-07 00:58:15,866 | INFO     | job 6832861864 has state=finished
[2025-10-07 02:59:16] 2025-10-07 00:58:15,866 | INFO     | preparing for final server update for job 6832861864 in state='finished'
[2025-10-07 02:59:16] 2025-10-07 00:58:15,866 | INFO     | this job has now completed (state=finished)
[2025-10-07 02:59:16] 2025-10-07 00:58:15,866 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-07 02:59:16] 2025-10-07 00:58:15,866 | INFO     | log transfer has been attempted: DONE
[2025-10-07 02:59:16] 2025-10-07 00:58:15,866 | INFO     | job 6832861864 has finished - writing final server update
[2025-10-07 02:59:16] 2025-10-07 00:58:15,867 | INFO     | total number of processed events: 400 (read)
[2025-10-07 02:59:16] 2025-10-07 00:58:15,867 | INFO     | executing command: lscpu
[2025-10-07 02:59:16] 2025-10-07 00:58:15,896 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-07 02:59:16] 2025-10-07 00:58:16,792 | INFO     | monitor loop #185: job 0:6832861864 is in state 'finished'
[2025-10-07 02:59:16] 2025-10-07 00:58:16,793 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 02:59:16] 2025-10-07 00:58:16,912 | INFO     | time since job start (2469s) is within the limit (172800.0s)
[2025-10-07 02:59:16] 2025-10-07 00:58:17,543 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-07 02:59:16] 2025-10-07 00:58:17,547 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2723.89021875
[2025-10-07 02:59:16] 2025-10-07 00:58:17,553 | INFO     | using path: /tmp/job_10281381/atlas/pilot/slots/0/PanDA_Pilot-6832861864/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 02:59:16] 2025-10-07 00:58:17,553 | INFO     | extracted standard info from prmon json
[2025-10-07 02:59:16] 2025-10-07 00:58:17,553 | INFO     | extracted standard memory fields from prmon json
[2025-10-07 02:59:16] 2025-10-07 00:58:17,553 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-07 02:59:16] 2025-10-07 00:58:17,553 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-07 02:59:16] 2025-10-07 00:58:17,553 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-07 02:59:16] 2025-10-07 00:58:17,554 | INFO     | fitting pss+swap vs Time
[2025-10-07 02:59:16] 2025-10-07 00:58:17,554 | INFO     | sum of square deviations: 12176972.5
[2025-10-07 02:59:16] 2025-10-07 00:58:17,554 | INFO     | sum of deviations: 221779652.00000003
[2025-10-07 02:59:16] 2025-10-07 00:58:17,554 | INFO     | mean x: 1759797556.5
[2025-10-07 02:59:16] 2025-10-07 00:58:17,554 | INFO     | mean y: 2613969.294117647
[2025-10-07 02:59:16] 2025-10-07 00:58:17,554 | INFO     | -- intersect: -32048644228.99946
[2025-10-07 02:59:16] 2025-10-07 00:58:17,554 | INFO     | intersect: -32048644228.99946
[2025-10-07 02:59:16] 2025-10-07 00:58:17,555 | INFO     | chi2: 0.0001467260909618334
[2025-10-07 02:59:16] 2025-10-07 00:58:17,555 | INFO     | -- intersect: -32048644228.99946
[2025-10-07 02:59:16] 2025-10-07 00:58:17,555 | INFO     | current memory leak: 18.21 B/s (using 34 data points, chi2=0.00)
[2025-10-07 02:59:16] 2025-10-07 00:58:17,555 | INFO     | could have reported an average CPU frequency of 2608 MHz (5 samples)
[2025-10-07 02:59:16] 2025-10-07 00:58:17,555 | INFO     | ..............................
[2025-10-07 02:59:16] 2025-10-07 00:58:17,555 | INFO     | . Timing measurements:
[2025-10-07 02:59:16] 2025-10-07 00:58:17,555 | INFO     | . get job = 0 s
[2025-10-07 02:59:16] 2025-10-07 00:58:17,555 | INFO     | . initial setup = 1 s
[2025-10-07 02:59:16] 2025-10-07 00:58:17,555 | INFO     | . payload setup = 2 s
[2025-10-07 02:59:16] 2025-10-07 00:58:17,555 | INFO     | . stage-in = 0 s
[2025-10-07 02:59:16] 2025-10-07 00:58:17,555 | INFO     | . payload execution = 2444 s
[2025-10-07 02:59:16] 2025-10-07 00:58:17,555 | INFO     | . stage-out = 0 s
[2025-10-07 02:59:16] 2025-10-07 00:58:17,555 | INFO     | . log creation = 0 s
[2025-10-07 02:59:16] 2025-10-07 00:58:17,555 | INFO     | ..............................
[2025-10-07 02:59:16] 2025-10-07 00:58:17,849 | INFO     | 
[2025-10-07 02:59:16] 2025-10-07 00:58:17,849 | INFO     | job summary report
[2025-10-07 02:59:16] 2025-10-07 00:58:17,849 | INFO     | --------------------------------------------------
[2025-10-07 02:59:16] 2025-10-07 00:58:17,849 | INFO     | PanDA job id: 6832861864
[2025-10-07 02:59:16] 2025-10-07 00:58:17,849 | INFO     | task id: 46376905
[2025-10-07 02:59:16] 2025-10-07 00:58:17,849 | INFO     | errors: (none)
[2025-10-07 02:59:16] 2025-10-07 00:58:17,849 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-07 02:59:16] 2025-10-07 00:58:17,849 | INFO     | pilot state: finished 
[2025-10-07 02:59:16] 2025-10-07 00:58:17,849 | INFO     | transexitcode: 0
[2025-10-07 02:59:16] 2025-10-07 00:58:17,849 | INFO     | exeerrorcode: 0
[2025-10-07 02:59:16] 2025-10-07 00:58:17,849 | INFO     | exeerrordiag: 
[2025-10-07 02:59:16] 2025-10-07 00:58:17,849 | INFO     | exitcode: 0
[2025-10-07 02:59:16] 2025-10-07 00:58:17,849 | INFO     | exitmsg: OK
[2025-10-07 02:59:16] 2025-10-07 00:58:17,849 | INFO     | cpuconsumptiontime: 17432 s
[2025-10-07 02:59:16] 2025-10-07 00:58:17,850 | INFO     | nevents: 400
[2025-10-07 02:59:16] 2025-10-07 00:58:17,850 | INFO     | neventsw: 0
[2025-10-07 02:59:16] 2025-10-07 00:58:17,850 | INFO     | pid: 19333
[2025-10-07 02:59:16] 2025-10-07 00:58:17,850 | INFO     | pgrp: 19333
[2025-10-07 02:59:16] 2025-10-07 00:58:17,850 | INFO     | corecount: 8
[2025-10-07 02:59:16] 2025-10-07 00:58:17,850 | INFO     | event service: False
[2025-10-07 02:59:16] 2025-10-07 00:58:17,850 | INFO     | sizes: {0: 2348664, 1: 2348974, 2: 2349236, 11: 2349264, 2450: 2374550, 2452: 2383578, 2455: 2383762, 2457: 2383988}
[2025-10-07 02:59:16] 2025-10-07 00:58:17,850 | INFO     | --------------------------------------------------
[2025-10-07 02:59:16] 2025-10-07 00:58:17,850 | INFO     | 
[2025-10-07 02:59:16] 2025-10-07 00:58:17,850 | INFO     | executing command: ls -lF /tmp/job_10281381/atlas/pilot/slots/0
[2025-10-07 02:59:16] 2025-10-07 00:58:17,858 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-07 02:59:16] 2025-10-07 00:58:17,858 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-07 02:59:16] 2025-10-07 00:58:17,858 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-07 02:59:16] 2025-10-07 00:58:17,858 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-07 02:59:16] 2025-10-07 00:58:17,858 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-07 02:59:16] 2025-10-07 00:58:17,859 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-07 02:59:16] 2025-10-07 00:58:17,859 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-07 02:59:16] 2025-10-07 00:58:17,859 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-07 02:59:16] 2025-10-07 00:58:17,859 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-07 02:59:16] 2025-10-07 00:58:17,859 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-07 02:59:16] 2025-10-07 00:58:17,859 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-07 02:59:16] 2025-10-07 00:58:17,859 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-07 02:59:16] 2025-10-07 00:58:17,859 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-07 02:59:16] 2025-10-07 00:58:17,859 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-07 02:59:16] 2025-10-07 00:58:17,859 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-07 02:59:16] 2025-10-07 00:58:17,859 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-07 02:59:16] 2025-10-07 00:58:17,859 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-07 02:59:16] 2025-10-07 00:58:17,859 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-07 02:59:16] 2025-10-07 00:58:17,859 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-07 02:59:16] 2025-10-07 00:58:17,859 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-07 02:59:16] 2025-10-07 00:58:17,859 | INFO     | job 6832861864 has completed (purged errors)
[2025-10-07 02:59:16] 2025-10-07 00:58:17,859 | INFO     | overall cleanup function is called
[2025-10-07 02:59:16] 2025-10-07 00:58:18,865 | INFO     | --- collectZombieJob: --- 10, [19333]
[2025-10-07 02:59:16] 2025-10-07 00:58:18,865 | INFO     | zombie collector waiting for pid 19333
[2025-10-07 02:59:16] 2025-10-07 00:58:18,865 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-07 02:59:16] 2025-10-07 00:58:18,865 | INFO     | collected zombie processes
[2025-10-07 02:59:16] 2025-10-07 00:58:18,865 | INFO     | will attempt to kill all subprocesses of pid=19333
[2025-10-07 02:59:16] 2025-10-07 00:58:18,970 | INFO     | process IDs to be killed: [19333] (in reverse order)
[2025-10-07 02:59:16] 2025-10-07 00:58:19,006 | WARNING  | found no corresponding commands to process id(s)
[2025-10-07 02:59:16] 2025-10-07 00:58:19,006 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-07 02:59:16] 2025-10-07 00:58:19,010 | INFO     | did not find any defunct processes belonging to 19333
[2025-10-07 02:59:16] 2025-10-07 00:58:19,013 | INFO     | did not find any defunct processes belonging to 19333
[2025-10-07 02:59:16] 2025-10-07 00:58:19,013 | INFO     | ready for new job
[2025-10-07 02:59:16] 2025-10-07 00:58:19,014 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-07 02:59:16] 2025-10-07 00:58:19,014 | INFO     | ***************************************
[2025-10-07 02:59:16] 2025-10-07 00:58:19,014 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-07 02:59:16] 2025-10-07 00:58:19,014 | INFO     | ***************************************
[2025-10-07 02:59:16] 2025-10-07 00:58:19,014 | INFO     | 
[2025-10-07 02:59:16] 2025-10-07 00:58:19,029 | INFO     | architecture information:
[2025-10-07 02:59:16] 2025-10-07 00:58:19,029 | INFO     | executing command: cat /etc/os-release
[2025-10-07 02:59:16] 2025-10-07 00:58:19,034 | INFO     | cat /etc/os-release:
[2025-10-07 02:59:16] NAME="CentOS Linux"
[2025-10-07 02:59:16] VERSION="7 (Core)"
[2025-10-07 02:59:16] ID="centos"
[2025-10-07 02:59:16] ID_LIKE="rhel fedora"
[2025-10-07 02:59:16] VERSION_ID="7"
[2025-10-07 02:59:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-07 02:59:16] ANSI_COLOR="0;31"
[2025-10-07 02:59:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-07 02:59:16] HOME_URL="https://www.centos.org/"
[2025-10-07 02:59:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-07 02:59:16] 
[2025-10-07 02:59:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-07 02:59:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-07 02:59:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-07 02:59:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-07 02:59:16] 
[2025-10-07 02:59:16] 2025-10-07 00:58:19,034 | INFO     | ***************************************
[2025-10-07 02:59:16] 2025-10-07 00:58:19,537 | INFO     | executing command: df -mP /tmp/job_10281381/atlas/pilot/slots/0
[2025-10-07 02:59:16] 2025-10-07 00:58:19,541 | INFO     | sufficient remaining disk space (224373243904 B)
[2025-10-07 02:59:16] 2025-10-07 00:58:19,542 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-07 02:59:16] 2025-10-07 00:58:19,542 | INFO     | current server update state: UPDATING_FINAL
[2025-10-07 02:59:16] 2025-10-07 00:58:19,542 | INFO     | update_server=False
[2025-10-07 02:59:16] 2025-10-07 00:58:19,542 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-07 02:59:16] 2025-10-07 00:58:19,542 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-07 02:59:16] 2025-10-07 00:58:19,647 | INFO     | all payload control threads have been joined
[2025-10-07 02:59:16] 2025-10-07 00:58:19,939 | INFO     | all data control threads have been joined
[2025-10-07 02:59:16] 2025-10-07 00:58:20,141 | INFO     | all job control threads have been joined
[2025-10-07 02:59:16] 2025-10-07 00:58:20,188 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-07 02:59:16] 2025-10-07 00:58:20,300 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-07 02:59:16] 2025-10-07 00:58:20,301 | INFO     | aborting loop
[2025-10-07 02:59:16] 2025-10-07 00:58:20,547 | INFO     | [job] retrieve thread has finished
[2025-10-07 02:59:16] 2025-10-07 00:58:20,547 | INFO     | [job] queue monitor thread has finished
[2025-10-07 02:59:16] 2025-10-07 00:58:20,624 | INFO     | [payload] failed_post thread has finished
[2025-10-07 02:59:16] 2025-10-07 00:58:20,652 | INFO     | [payload] control thread has finished
[2025-10-07 02:59:16] 2025-10-07 00:58:20,668 | INFO     | [payload] validate_pre thread has finished
[2025-10-07 02:59:16] 2025-10-07 00:58:20,678 | INFO     | [job] create_data_payload thread has finished
[2025-10-07 02:59:16] 2025-10-07 00:58:20,742 | INFO     | [payload] execute_payloads thread has finished
[2025-10-07 02:59:16] 2025-10-07 00:58:20,938 | INFO     | [data] copytool_in thread has finished
[2025-10-07 02:59:16] 2025-10-07 00:58:20,944 | INFO     | [data] control thread has finished
[2025-10-07 02:59:16] 2025-10-07 00:58:21,146 | INFO     | [job] control thread has finished
[2025-10-07 02:59:16] 2025-10-07 00:58:21,306 | INFO     | [job] job monitor thread has finished
[2025-10-07 02:59:16] 2025-10-07 00:58:21,392 | INFO     | [payload] validate_post thread has finished
[2025-10-07 02:59:16] 2025-10-07 00:58:21,637 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-07 02:59:16] 2025-10-07 00:58:22,020 | INFO     | [job] validate thread has finished
[2025-10-07 02:59:16] 2025-10-07 00:58:22,193 | INFO     | [data] copytool_out thread has finished
[2025-10-07 02:59:16] 2025-10-07 00:58:25,642 | INFO     | [data] queue_monitor thread has finished
[2025-10-07 02:59:16] 2025-10-07 00:58:30,579 | INFO     | job.realtimelogging is not enabled
[2025-10-07 02:59:16] 2025-10-07 00:58:31,584 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-07 02:59:16] 2025-10-07 00:58:50,106 | INFO     | PID=30842 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-07 02:59:16] 2025-10-07 00:58:50,106 | INFO     | .. there are 4 such processes running
[2025-10-07 02:59:16] 2025-10-07 00:58:50,106 | INFO     | found 0 job(s) in 20 queues
[2025-10-07 02:59:16] 2025-10-07 00:58:50,106 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-07 02:59:16] 2025-10-07 00:58:50,106 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-07 02:59:16] 2025-10-07 00:59:11,425 | INFO     | [monitor] cgroup control has ended
[2025-10-07 02:59:16] 2025-10-07 00:59:11,732 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456064747264)>']
[2025-10-07 02:59:16] 2025-10-07 00:59:12,217 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-07 02:59:16] 2025-10-07 00:59:12,217 | INFO     | [monitor] control thread has ended
[2025-10-07 02:59:16] 2025-10-07 00:59:16,757 | INFO     | all workflow threads have been joined
[2025-10-07 02:59:16] 2025-10-07 00:59:16,758 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-07 02:59:16] 2025-10-07 00:59:16,758 | INFO     | traces error code: 0
[2025-10-07 02:59:16] 2025-10-07 00:59:16,758 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-07 02:59:16] 2025-10-07 00:59:16,818 [wrapper] ==== pilot stdout END ====
[2025-10-07 02:59:16] 2025-10-07 00:59:16,820 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-07 02:59:16] 2025-10-07 00:59:16,821 [wrapper] pilotpid: 30842
[2025-10-07 02:59:16] 2025-10-07 00:59:16,822 [wrapper] Pilot exit status: 0
[2025-10-07 02:59:16] 2025-10-07 00:59:16,825 [wrapper] pandaids: 6832861864
[2025-10-07 02:59:16] 2025-10-07 00:59:16,849 [wrapper] cleanup supervisor_pilot 15555 30843
[2025-10-07 02:59:16] 2025-10-07 00:59:16,850 [wrapper] Test setup, not cleaning
[2025-10-07 02:59:16] 2025-10-07 00:59:16,851 [wrapper] apfmon messages muted
[2025-10-07 02:59:16] 2025-10-07 00:59:16,852 [wrapper] ==== wrapper stdout END ====
[2025-10-07 02:59:16] 2025-10-07 00:59:16,853 [wrapper] ==== wrapper stderr END ====
[2025-10-07 02:59:16]  *** Error codes and diagnostics ***
[2025-10-07 02:59:16]     "exeErrorCode": 0,
[2025-10-07 02:59:16]     "exeErrorDiag": "",
[2025-10-07 02:59:16]     "pilotErrorCode": 0,
[2025-10-07 02:59:16]     "pilotErrorDiag": "",
[2025-10-07 02:59:16]  *** Listing of results directory ***
[2025-10-07 02:59:17] total 379156
[2025-10-07 02:59:17] -rwx------ 1 mf493845 unix-user     36292 Oct  6 20:35 runpilot2-wrapper.sh
[2025-10-07 02:59:17] -rw------- 1 mf493845 unix-user    552446 Oct  6 20:35 pilot3.tar.gz
[2025-10-07 02:59:17] -rw------- 1 mf493845 unix-user      5112 Oct  6 20:35 queuedata.json
[2025-10-07 02:59:17] -rw------- 1 mf493845 unix-user       100 Oct  7 01:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-07 02:59:17] -rwxr-xr-x 1 mf493845 unix-user      7986 Oct  7 01:22 run_atlas
[2025-10-07 02:59:17] -rw------- 1 mf493845 unix-user       105 Oct  7 01:22 job.xml
[2025-10-07 02:59:17] -rw-r--r-- 2 mf493845 unix-user     15120 Oct  7 02:17 start_atlas.sh
[2025-10-07 02:59:17] drwxrwx--x 2 mf493845 unix-user       100 Oct  7 02:17 shared
[2025-10-07 02:59:17] -rw-r--r-- 2 mf493845 unix-user    565596 Oct  7 02:17 input.tar.gz
[2025-10-07 02:59:17] -rw------- 1 mf493845 unix-user      6387 Oct  7 02:17 init_data.xml
[2025-10-07 02:59:17] -rw-r--r-- 2 mf493845 unix-user 213156590 Oct  7 02:17 EVNT.46376901._004321.pool.root.1
[2025-10-07 02:59:17] -rw------- 1 mf493845 unix-user         0 Oct  7 02:17 boinc_setup_complete
[2025-10-07 02:59:17] -rw------- 1 mf493845 unix-user      8192 Oct  7 02:17 boinc_mmap_file
[2025-10-07 02:59:17] -rw------- 1 mf493845 unix-user         0 Oct  7 02:17 boinc_lockfile
[2025-10-07 02:59:17] -rw------- 1 mf493845 unix-user      2521 Oct  7 02:17 pandaJob.out
[2025-10-07 02:59:17] -rw------- 1 mf493845 unix-user    974984 Oct  7 02:17 agis_schedconf.cvmfs.json
[2025-10-07 02:59:17] -rw------- 1 mf493845 unix-user   1560401 Oct  7 02:17 agis_ddmendpoints.agis.ALL.json
[2025-10-07 02:59:17] drwx------ 4 mf493845 unix-user       400 Oct  7 02:17 pilot3
[2025-10-07 02:59:17] -rw------- 1 mf493845 unix-user 169820954 Oct  7 02:57 HITS.46376905._116468.pool.root.1
[2025-10-07 02:59:17] -rw------- 1 mf493845 unix-user      1012 Oct  7 02:58 memory_monitor_summary.json
[2025-10-07 02:59:17] -rw------- 1 mf493845 unix-user    305224 Oct  7 02:58 log.46376905._116468.job.log.tgz.1
[2025-10-07 02:59:17] -rw------- 1 mf493845 unix-user      7763 Oct  7 02:58 heartbeat.json
[2025-10-07 02:59:17] -rw------- 1 mf493845 unix-user        95 Oct  7 02:58 pilot_heartbeat.json
[2025-10-07 02:59:17] -rw------- 1 mf493845 unix-user      4907 Oct  7 02:59 pilotlog.txt
[2025-10-07 02:59:17] -rw------- 1 mf493845 unix-user    400331 Oct  7 02:59 log.46376905._116468.job.log.1
[2025-10-07 02:59:17] -rw------- 1 mf493845 unix-user       357 Oct  7 02:59 output.list
[2025-10-07 02:59:17] -rw------- 1 mf493845 unix-user       620 Oct  7 02:59 runtime_log
[2025-10-07 02:59:17] -rw------- 1 mf493845 unix-user    727040 Oct  7 02:59 result.tar.gz
[2025-10-07 02:59:17] -rw------- 1 mf493845 unix-user      9076 Oct  7 02:59 runtime_log.err
[2025-10-07 02:59:17] -rw------- 1 mf493845 unix-user       639 Oct  7 02:59 GvHLDm7E5P8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmjGUNDmeBZhZm.diag
[2025-10-07 02:59:17] -rw------- 1 mf493845 unix-user     22241 Oct  7 02:59 stderr.txt
[2025-10-07 02:59:17] HITS file was successfully produced:
[2025-10-07 02:59:17] -rw------- 1 mf493845 unix-user 169820954 Oct  7 02:57 shared/HITS.pool.root.1
[2025-10-07 02:59:17]  *** Contents of shared directory: ***
[2025-10-07 02:59:17] total 375292
[2025-10-07 02:59:17] -rw-r--r-- 2 mf493845 unix-user     15120 Oct  7 02:17 start_atlas.sh
[2025-10-07 02:59:17] -rw-r--r-- 2 mf493845 unix-user    565596 Oct  7 02:17 input.tar.gz
[2025-10-07 02:59:17] -rw-r--r-- 2 mf493845 unix-user 213156590 Oct  7 02:17 ATLAS.root_0
[2025-10-07 02:59:17] -rw------- 1 mf493845 unix-user 169820954 Oct  7 02:57 HITS.pool.root.1
[2025-10-07 02:59:17] -rw------- 1 mf493845 unix-user    727040 Oct  7 02:59 result.tar.gz
02:59:18 (23895): run_atlas exited; CPU time 17464.956386
02:59:18 (23895): called boinc_finish(0)

</stderr_txt>
]]>

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