Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:59:36 (1589791): wrapper (7.7.26015): starting
13:59:36 (1589791): wrapper: running run_atlas (--nthreads 8)
[2025-10-06 13:59:36] Arguments: --nthreads 8
[2025-10-06 13:59:36] Threads: 8
[2025-10-06 13:59:36] Checking for CVMFS
[2025-10-06 13:59:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-06 13:59:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-06 13:59:37] Running cvmfs_config stat atlas.cern.ch
[2025-10-06 13:59:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-06 13:59:38] 2.11.3.0 1849 21791 232932 151410 2 658 33046115 45568000 14909 130560 0 155575806 99.856 59221797 15677 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-10-06 13:59:38] CVMFS is ok
[2025-10-06 13:59:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-06 13:59:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-06 13:59:38] Further information can be found at the LHC@home message board.
[2025-10-06 13:59:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-06 13:59:38] Checking for apptainer binary...
[2025-10-06 13:59:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-06 13:59:38] Running /usr/bin/apptainer --version
[2025-10-06 13:59:38] apptainer version 1.4.1-1.el9
[2025-10-06 13:59:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-06 13:59:39] wns0023.triumf.lcg
[2025-10-06 13:59:39] apptainer works
[2025-10-06 13:59:39] Set ATHENA_PROC_NUMBER=8
[2025-10-06 13:59:39] Set ATHENA_CORE_NUMBER=8
[2025-10-06 13:59:39] Starting ATLAS job with PandaID=6832863715
[2025-10-06 13:59:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-06 14:04:21]  *** The last 200 lines of the pilot log: ***
[2025-10-06 14:04:21] 2025-10-06 21:03:48,261 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-06 14:04:21] 2025-10-06 21:03:48,262 | WARNING  | wrong length of table data, x=[1759784466.0], y=[833.0] (must be same and length>=4)
[2025-10-06 14:04:21] 2025-10-06 21:03:48,262 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-10-06 14:04:21] 2025-10-06 21:03:48,262 | INFO     | ..............................
[2025-10-06 14:04:21] 2025-10-06 21:03:48,262 | INFO     | . Timing measurements:
[2025-10-06 14:04:21] 2025-10-06 21:03:48,263 | INFO     | . get job = 0 s
[2025-10-06 14:04:21] 2025-10-06 21:03:48,263 | INFO     | . initial setup = 3 s
[2025-10-06 14:04:21] 2025-10-06 21:03:48,263 | INFO     | . payload setup = 13 s
[2025-10-06 14:04:21] 2025-10-06 21:03:48,263 | INFO     | . stage-in = 0 s
[2025-10-06 14:04:21] 2025-10-06 21:03:48,263 | INFO     | . payload execution = 36 s
[2025-10-06 14:04:21] 2025-10-06 21:03:48,263 | INFO     | . stage-out = 0 s
[2025-10-06 14:04:21] 2025-10-06 21:03:48,263 | INFO     | . log creation = 0 s
[2025-10-06 14:04:21] 2025-10-06 21:03:48,263 | INFO     | ..............................
[2025-10-06 14:04:21] 2025-10-06 21:03:48,263 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-06 14:04:21] 2025-10-06 21:03:48,263 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6832863715/pilotlog.txt
[2025-10-06 14:04:21] 2025-10-06 21:03:48,283 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-06 14:04:21] - Log from pilotlog.txt -
[2025-10-06 14:04:21] 2025-10-06 21:03:48,260 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6832863715/memory_monitor_summary.json (trf name=prmon)
[2025-10-06 14:04:21] 2025-10-06 21:03:48,261 | INFO     | extracted standard info from prmon json
[2025-10-06 14:04:21] 2025-10-06 21:03:48,261 | INFO     | extracted standard memory fields from prmon json
[2025-10-06 14:04:21] 2025-10-06 21:03:48,261 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-06 14:04:21] 2025-10-06 21:03:48,261 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-06 14:04:21] 2025-10-06 21:03:48,261 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-06 14:04:21] 2025-10-06 21:03:48,262 | WARNING  | wrong length of table data, x=[1759784466.0], y=[833.0] (must be same and length>=4)
[2025-10-06 14:04:21] 2025-10-06 21:03:48,262 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-10-06 14:04:21] 2025-10-06 21:03:48,262 | INFO     | ..............................
[2025-10-06 14:04:21] 2025-10-06 21:03:48,262 | INFO     | . Timing measurements:
[2025-10-06 14:04:21] 2025-10-06 21:03:48,263 | INFO     | . get job = 0 s
[2025-10-06 14:04:21] 2025-10-06 21:03:48,263 | INFO     | . initial setup = 3 s
[2025-10-06 14:04:21] 2025-10-06 21:03:48,263 | INFO     | . payload setup = 13 s
[2025-10-06 14:04:21] 2025-10-06 21:03:48,263 | INFO     | . stage-in = 0 s
[2025-10-06 14:04:21] 2025-10-06 21:03:48,263 | INFO     | . payload execution = 36 s
[2025-10-06 14:04:21] 2025-10-06 21:03:48,263 | INFO     | . stage-out = 0 s
[2025-10-06 14:04:21] 2025-10-06 21:03:48,263 | INFO     | . log creation = 0 s
[2025-10-06 14:04:21] 2025-10-06 21:03:48,263 | INFO     | ..............................
[2025-10-06 14:04:21] 2025-10-06 21:03:48,263 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-06 14:04:21] 2025-10-06 21:03:48,263 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6832863715/pilotlog.txt
[2025-10-06 14:04:21] 2025-10-06 21:03:48,283 | WARNING  | 
[2025-10-06 14:04:21] [begin log extracts]
[2025-10-06 14:04:21] - Log from pilotlog.txt -
[2025-10-06 14:04:21] 2025-10-06 21:03:48,260 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6832863715/memory_monitor_summary.json (trf name=prmon)
[2025-10-06 14:04:21] 2025-10-06 21:03:48,261 | INFO     | extracted standard info from prmon json
[2025-10-06 14:04:21] 2025-10-06 21:03:48,261 | INFO     | extracted standard memory fields from prmon json
[2025-10-06 14:04:21] 2025-10-06 21:03:48,261 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-06 14:04:21] 2025-10-06 21:03:48,261 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-06 14:04:21] 2025-10-06 21:03:48,261 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-06 14:04:21] 2025-10-06 21:03:48,262 | WARNING  | wrong length of table data, x=[1759784466.0], y=[833.0] (must be same and length>=4)
[2025-10-06 14:04:21] 2025-10-06 21:03:48,262 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-10-06 14:04:21] 2025-10-06 21:03:48,262 | INFO     | ..............................
[2025-10-06 14:04:21] 2025-10-06 21:03:48,262 | INFO     | . Timing measurements:
[2025-10-06 14:04:21] 2025-10-06 21:03:48,263 | INFO     | . get job = 0 s
[2025-10-06 14:04:21] 2025-10-06 21:03:48,263 | INFO     | . initial setup = 3 s
[2025-10-06 14:04:21] 2025-10-06 21:03:48,263 | INFO     | . payload setup = 13 s
[2025-10-06 14:04:21] 2025-10-06 21:03:48,263 | INFO     | . stage-in = 0 s
[2025-10-06 14:04:21] 2025-10-06 21:03:48,263 | INFO     | . payload execution = 36 s
[2025-10-06 14:04:21] 2025-10-06 21:03:48,263 | INFO     | . stage-out = 0 s
[2025-10-06 14:04:21] 2025-10-06 21:03:48,263 | INFO     | . log creation = 0 s
[2025-10-06 14:04:21] 2025-10-06 21:03:48,263 | INFO     | ..............................
[2025-10-06 14:04:21] 2025-10-06 21:03:48,263 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-06 14:04:21] 2025-10-06 21:03:48,263 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6832863715/pilotlog.txt
[2025-10-06 14:04:21] [end log extracts]
[2025-10-06 14:04:21] 2025-10-06 21:03:48,283 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-06 14:04:21] 2025-10-06 21:03:48,284 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-10-06 14:04:21] 2025-10-06 21:03:48,357 | INFO     | 
[2025-10-06 14:04:21] 2025-10-06 21:03:48,357 | INFO     | job summary report
[2025-10-06 14:04:21] 2025-10-06 21:03:48,357 | INFO     | --------------------------------------------------
[2025-10-06 14:04:21] 2025-10-06 21:03:48,357 | INFO     | PanDA job id: 6832863715
[2025-10-06 14:04:21] 2025-10-06 21:03:48,357 | INFO     | task id: 46376905
[2025-10-06 14:04:21] 2025-10-06 21:03:48,357 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-06 14:01:22,981 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-06 14:04:21] 2025-10-06 21:03:48,357 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-06 14:04:21] 2025-10-06 21:03:48,358 | INFO     | pilot state: failed 
[2025-10-06 14:04:21] 2025-10-06 21:03:48,358 | INFO     | transexitcode: 65
[2025-10-06 14:04:21] 2025-10-06 21:03:48,358 | INFO     | exeerrorcode: 65
[2025-10-06 14:04:21] 2025-10-06 21:03:48,358 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-10-06 14:04:21] 2025-10-06 21:03:48,358 | INFO     | exitcode: 65
[2025-10-06 14:04:21] 2025-10-06 21:03:48,358 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-10-06 14:04:21] 2025-10-06 21:03:48,358 | INFO     | cpuconsumptiontime: 18 s
[2025-10-06 14:04:21] 2025-10-06 21:03:48,358 | INFO     | nevents: 0
[2025-10-06 14:04:21] 2025-10-06 21:03:48,358 | INFO     | neventsw: 0
[2025-10-06 14:04:21] 2025-10-06 21:03:48,358 | INFO     | pid: 1600367
[2025-10-06 14:04:21] 2025-10-06 21:03:48,358 | INFO     | pgrp: 1600367
[2025-10-06 14:04:21] 2025-10-06 21:03:48,358 | INFO     | corecount: 8
[2025-10-06 14:04:21] 2025-10-06 21:03:48,358 | INFO     | event service: False
[2025-10-06 14:04:21] 2025-10-06 21:03:48,358 | INFO     | sizes: {0: 2348590, 1: 2348674, 2: 2348873, 12: 2348873, 13: 2349163, 23: 2349219, 55: 2372714, 57: 2377006, 59: 2377034, 188: 2377200}
[2025-10-06 14:04:21] 2025-10-06 21:03:48,359 | INFO     | --------------------------------------------------
[2025-10-06 14:04:21] 2025-10-06 21:03:48,359 | INFO     | 
[2025-10-06 14:04:21] 2025-10-06 21:03:48,359 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-10-06 14:04:21] 2025-10-06 21:03:48,423 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-06 14:04:21] 2025-10-06 21:03:48,423 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-06 14:04:21] 2025-10-06 21:03:48,423 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-06 14:04:21] 2025-10-06 21:03:48,423 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-06 14:04:21] 2025-10-06 21:03:48,423 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-06 14:04:21] 2025-10-06 21:03:48,423 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-06 14:04:21] 2025-10-06 21:03:48,424 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-06 14:04:21] 2025-10-06 21:03:48,424 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-06 14:04:21] 2025-10-06 21:03:48,424 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-06 14:04:21] 2025-10-06 21:03:48,424 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-06 14:04:21] 2025-10-06 21:03:48,424 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-06 14:04:21] 2025-10-06 21:03:48,424 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-06 14:04:21] 2025-10-06 21:03:48,424 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-06 14:04:21] 2025-10-06 21:03:48,424 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-06 14:04:21] 2025-10-06 21:03:48,424 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-06 14:04:21] 2025-10-06 21:03:48,424 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-06 14:04:21] 2025-10-06 21:03:48,424 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-06 14:04:21] 2025-10-06 21:03:48,424 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-06 14:04:21] 2025-10-06 21:03:48,424 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-06 14:04:21] 2025-10-06 21:03:48,425 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-06 14:04:21] 2025-10-06 21:03:48,425 | INFO     | job 6832863715 has completed (purged errors)
[2025-10-06 14:04:21] 2025-10-06 21:03:48,425 | INFO     | overall cleanup function is called
[2025-10-06 14:04:21] 2025-10-06 21:03:48,636 | INFO     | PID=1593471 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-06 14:04:21] 2025-10-06 21:03:48,636 | INFO     | .. there are 25 such processes running
[2025-10-06 14:04:21] 2025-10-06 21:03:49,438 | INFO     | --- collectZombieJob: --- 10, [1600367]
[2025-10-06 14:04:21] 2025-10-06 21:03:49,438 | INFO     | zombie collector waiting for pid 1600367
[2025-10-06 14:04:21] 2025-10-06 21:03:49,438 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-06 14:04:21] 2025-10-06 21:03:49,438 | INFO     | collected zombie processes
[2025-10-06 14:04:21] 2025-10-06 21:03:49,438 | INFO     | will attempt to kill all subprocesses of pid=1600367
[2025-10-06 14:04:21] 2025-10-06 21:03:49,892 | INFO     | process IDs to be killed: [1600367] (in reverse order)
[2025-10-06 14:04:21] 2025-10-06 21:03:49,952 | WARNING  | found no corresponding commands to process id(s)
[2025-10-06 14:04:21] 2025-10-06 21:03:49,952 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-06 14:04:21] 2025-10-06 21:03:49,959 | INFO     | did not find any defunct processes belonging to 1600367
[2025-10-06 14:04:21] 2025-10-06 21:03:49,966 | INFO     | did not find any defunct processes belonging to 1600367
[2025-10-06 14:04:21] 2025-10-06 21:03:49,967 | INFO     | ready for new job
[2025-10-06 14:04:21] 2025-10-06 21:03:49,967 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-06 14:04:21] 2025-10-06 21:03:49,968 | INFO     | ***************************************
[2025-10-06 14:04:21] 2025-10-06 21:03:49,968 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-06 14:04:21] 2025-10-06 21:03:49,968 | INFO     | ***************************************
[2025-10-06 14:04:21] 2025-10-06 21:03:49,968 | INFO     | 
[2025-10-06 14:04:21] 2025-10-06 21:03:49,970 | INFO     | architecture information:
[2025-10-06 14:04:21] 2025-10-06 21:03:49,970 | INFO     | executing command: cat /etc/os-release
[2025-10-06 14:04:21] 2025-10-06 21:03:49,987 | INFO     | cat /etc/os-release:
[2025-10-06 14:04:21] NAME="CentOS Linux"
[2025-10-06 14:04:21] VERSION="7 (Core)"
[2025-10-06 14:04:21] ID="centos"
[2025-10-06 14:04:21] ID_LIKE="rhel fedora"
[2025-10-06 14:04:21] VERSION_ID="7"
[2025-10-06 14:04:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-06 14:04:21] ANSI_COLOR="0;31"
[2025-10-06 14:04:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-06 14:04:21] HOME_URL="https://www.centos.org/"
[2025-10-06 14:04:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-06 14:04:21] 
[2025-10-06 14:04:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-06 14:04:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-06 14:04:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-06 14:04:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-06 14:04:21] 
[2025-10-06 14:04:21] 2025-10-06 21:03:49,987 | INFO     | ***************************************
[2025-10-06 14:04:21] 2025-10-06 21:03:50,490 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-10-06 14:04:21] 2025-10-06 21:03:50,504 | INFO     | sufficient remaining disk space (1415596474368 B)
[2025-10-06 14:04:21] 2025-10-06 21:03:50,504 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-06 14:04:21] 2025-10-06 21:03:50,504 | INFO     | current server update state: UPDATING_FINAL
[2025-10-06 14:04:21] 2025-10-06 21:03:50,504 | INFO     | update_server=False
[2025-10-06 14:04:21] 2025-10-06 21:03:50,504 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-06 14:04:21] 2025-10-06 21:03:50,505 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-06 14:04:21] 2025-10-06 21:03:50,505 | INFO     | aborting loop
[2025-10-06 14:04:21] 2025-10-06 21:03:50,616 | INFO     | all data control threads have been joined
[2025-10-06 14:04:21] 2025-10-06 21:03:50,732 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-06 14:04:21] 2025-10-06 21:03:50,835 | INFO     | all job control threads have been joined
[2025-10-06 14:04:21] 2025-10-06 21:03:51,517 | INFO     | [job] retrieve thread has finished
[2025-10-06 14:04:21] 2025-10-06 21:03:51,518 | INFO     | [job] job monitor thread has finished
[2025-10-06 14:04:21] 2025-10-06 21:03:51,622 | INFO     | [data] control thread has finished
[2025-10-06 14:04:21] 2025-10-06 21:03:51,791 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-06 14:04:21] 2025-10-06 21:03:51,794 | INFO     | [job] validate thread has finished
[2025-10-06 14:04:21] 2025-10-06 21:03:51,810 | INFO     | [payload] failed_post thread has finished
[2025-10-06 14:04:21] 2025-10-06 21:03:51,820 | INFO     | [payload] validate_pre thread has finished
[2025-10-06 14:04:21] 2025-10-06 21:03:51,861 | INFO     | [job] control thread has finished
[2025-10-06 14:04:21] 2025-10-06 21:03:51,921 | INFO     | [payload] validate_post thread has finished
[2025-10-06 14:04:21] 2025-10-06 21:03:51,945 | INFO     | all payload control threads have been joined
[2025-10-06 14:04:21] 2025-10-06 21:03:52,194 | INFO     | [payload] execute_payloads thread has finished
[2025-10-06 14:04:21] 2025-10-06 21:03:52,466 | INFO     | [job] create_data_payload thread has finished
[2025-10-06 14:04:21] 2025-10-06 21:03:52,529 | INFO     | [data] copytool_in thread has finished
[2025-10-06 14:04:21] 2025-10-06 21:03:52,739 | INFO     | [data] copytool_out thread has finished
[2025-10-06 14:04:21] 2025-10-06 21:03:52,751 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-06 14:04:21] 2025-10-06 21:03:52,951 | INFO     | [payload] control thread has finished
[2025-10-06 14:04:21] 2025-10-06 21:03:53,375 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-06 14:04:21] 2025-10-06 21:03:54,380 | INFO     | [job] queue monitor thread has finished
[2025-10-06 14:04:21] 2025-10-06 21:03:55,798 | INFO     | [data] queue_monitor thread has finished
[2025-10-06 14:04:21] 2025-10-06 21:04:02,021 | INFO     | [monitor] cgroup control has ended
[2025-10-06 14:04:21] 2025-10-06 21:04:02,524 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140418305099584)>', '<ExcThread(monitor, started 140417731368704)>']
[2025-10-06 14:04:21] 2025-10-06 21:04:07,550 | INFO     | all workflow threads have been joined
[2025-10-06 14:04:21] 2025-10-06 21:04:07,550 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-06 14:04:21] 2025-10-06 21:04:07,550 | INFO     | traces error code: 0
[2025-10-06 14:04:21] 2025-10-06 21:04:07,551 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-06 14:04:21] 2025-10-06 21:04:20,963 | INFO     | PID=1593471 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-06 14:04:21] 2025-10-06 21:04:20,963 | INFO     | .. there are 25 such processes running
[2025-10-06 14:04:21] 2025-10-06 21:04:20,964 | INFO     | found 0 job(s) in 20 queues
[2025-10-06 14:04:21] 2025-10-06 21:04:20,964 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-06 14:04:21] 2025-10-06 21:04:20,964 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-06 14:04:21] 2025-10-06 21:04:20,964 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-06 14:04:21] 2025-10-06 21:04:20,964 | INFO     | [monitor] control thread has ended
[2025-10-06 14:04:21] 2025-10-06 21:04:21,101 [wrapper] ==== pilot stdout END ====
[2025-10-06 14:04:21] 2025-10-06 21:04:21,102 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-06 14:04:21] 2025-10-06 21:04:21,104 [wrapper] pilotpid: 1593471
[2025-10-06 14:04:21] 2025-10-06 21:04:21,106 [wrapper] Pilot exit status: 0
[2025-10-06 14:04:21] 2025-10-06 21:04:21,138 [wrapper] pandaids: 6832863715
[2025-10-06 14:04:21] 2025-10-06 21:04:21,174 [wrapper] cleanup supervisor_pilot 1593477 1593472
[2025-10-06 14:04:21] 2025-10-06 21:04:21,177 [wrapper] Test setup, not cleaning
[2025-10-06 14:04:21] 2025-10-06 21:04:21,178 [wrapper] apfmon messages muted
[2025-10-06 14:04:21] 2025-10-06 21:04:21,180 [wrapper] ==== wrapper stdout END ====
[2025-10-06 14:04:21] 2025-10-06 21:04:21,182 [wrapper] ==== wrapper stderr END ====
[2025-10-06 14:04:21]  *** Error codes and diagnostics ***
[2025-10-06 14:04:21]     "exeErrorCode": 65,
[2025-10-06 14:04:21]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-10-06 14:04:21]     "pilotErrorCode": 1305,
[2025-10-06 14:04:21]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-10-06 14:04:21]  *** Listing of results directory ***
[2025-10-06 14:04:21] total 214356
[2025-10-06 14:04:21] -rw-r--r--. 1 boinc boinc    552446 Oct  6 12:11 pilot3.tar.gz
[2025-10-06 14:04:21] -rw-r--r--. 1 boinc boinc      5112 Oct  6 12:15 queuedata.json
[2025-10-06 14:04:21] -rwx------. 1 boinc boinc     36292 Oct  6 12:17 runpilot2-wrapper.sh
[2025-10-06 14:04:21] -rw-r--r--. 1 boinc boinc       100 Oct  6 13:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-06 14:04:21] -rwxr-xr-x. 1 boinc boinc      7986 Oct  6 13:59 run_atlas
[2025-10-06 14:04:21] -rw-r--r--. 1 boinc boinc       105 Oct  6 13:59 job.xml
[2025-10-06 14:04:21] -rw-r--r--. 1 boinc boinc      6444 Oct  6 13:59 init_data.xml
[2025-10-06 14:04:21] -rw-r--r--. 2 boinc boinc 215385794 Oct  6 13:59 EVNT.46376901._004352.pool.root.1
[2025-10-06 14:04:21] -rw-r--r--. 2 boinc boinc     15120 Oct  6 13:59 start_atlas.sh
[2025-10-06 14:04:21] drwxrwx--x. 2 boinc boinc      4096 Oct  6 13:59 shared
[2025-10-06 14:04:21] -rw-r--r--. 2 boinc boinc    565603 Oct  6 13:59 input.tar.gz
[2025-10-06 14:04:21] -rw-r--r--. 1 boinc boinc         0 Oct  6 13:59 boinc_lockfile
[2025-10-06 14:04:21] -rw-r--r--. 1 boinc boinc      2521 Oct  6 13:59 pandaJob.out
[2025-10-06 14:04:21] -rw-------. 1 boinc boinc    975026 Oct  6 13:59 agis_schedconf.cvmfs.json
[2025-10-06 14:04:21] -rw-------. 1 boinc boinc   1560401 Oct  6 14:00 agis_ddmendpoints.agis.ALL.json
[2025-10-06 14:04:21] drwx------. 4 boinc boinc      4096 Oct  6 14:00 pilot3
[2025-10-06 14:04:21] -rw-r--r--. 1 boinc boinc       523 Oct  6 14:01 boinc_task_state.xml
[2025-10-06 14:04:21] -rw-------. 1 boinc boinc       956 Oct  6 14:01 memory_monitor_summary.json
[2025-10-06 14:04:21] -rw-------. 1 boinc boinc     22514 Oct  6 14:01 log.46376905._117237.job.log.tgz.1
[2025-10-06 14:04:21] -rw-------. 1 boinc boinc      8389 Oct  6 14:03 heartbeat.json
[2025-10-06 14:04:21] -rw-r--r--. 1 boinc boinc      8192 Oct  6 14:04 boinc_mmap_file
[2025-10-06 14:04:21] -rw-r--r--. 1 boinc boinc        22 Oct  6 14:04 wrapper_checkpoint.txt
[2025-10-06 14:04:21] -rw-------. 1 boinc boinc        95 Oct  6 14:04 pilot_heartbeat.json
[2025-10-06 14:04:21] -rw-------. 1 boinc boinc       823 Oct  6 14:04 pilotlog.txt
[2025-10-06 14:04:21] -rw-------. 1 boinc boinc     90539 Oct  6 14:04 log.46376905._117237.job.log.1
[2025-10-06 14:04:21] -rw-------. 1 boinc boinc       188 Oct  6 14:04 output.list
[2025-10-06 14:04:21] -rw-r--r--. 1 boinc boinc       620 Oct  6 14:04 runtime_log
[2025-10-06 14:04:21] -rw-------. 1 boinc boinc    133120 Oct  6 14:04 result.tar.gz
[2025-10-06 14:04:21] -rw-------. 1 boinc boinc       644 Oct  6 14:04 vP9MDmZt5P8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlPUNDm0JWmzn.diag
[2025-10-06 14:04:21] -rw-r--r--. 1 boinc boinc      8526 Oct  6 14:04 runtime_log.err
[2025-10-06 14:04:21] -rw-r--r--. 1 boinc boinc     21926 Oct  6 14:04 stderr.txt
[2025-10-06 14:04:21] No HITS result produced
[2025-10-06 14:04:21]  *** Contents of shared directory: ***
[2025-10-06 14:04:21] total 211048
[2025-10-06 14:04:21] -rw-r--r--. 2 boinc boinc 215385794 Oct  6 13:59 ATLAS.root_0
[2025-10-06 14:04:21] -rw-r--r--. 2 boinc boinc     15120 Oct  6 13:59 start_atlas.sh
[2025-10-06 14:04:21] -rw-r--r--. 2 boinc boinc    565603 Oct  6 13:59 input.tar.gz
[2025-10-06 14:04:21] -rw-------. 1 boinc boinc    133120 Oct  6 14:04 result.tar.gz
14:04:22 (1589791): run_atlas exited; CPU time 27.609211
14:04:22 (1589791): called boinc_finish(0)

</stderr_txt>
]]>

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