Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
15:56:27 (90083): wrapper (7.7.26015): starting
15:56:27 (90083): wrapper: running run_atlas (--nthreads 12)
[2025-10-08 15:56:27] Arguments: --nthreads 12
[2025-10-08 15:56:27] Threads: 12
[2025-10-08 15:56:27] Checking for CVMFS
[2025-10-08 15:56:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-08 15:56:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-08 15:56:27] Running cvmfs_config stat atlas.cern.ch
[2025-10-08 15:56:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-08 15:56:28] 2.13.2.0 13441 7290 60344 151458 0 57 4908567 6144000 0 130560 0 6314231 99.992 222355 41 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2025-10-08 15:56:28] CVMFS is ok
[2025-10-08 15:56:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-08 15:56:28] Checking for apptainer binary...
[2025-10-08 15:56:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-08 15:56:28] Running /usr/bin/apptainer --version
[2025-10-08 15:56:28] apptainer version 1.4.3
[2025-10-08 15:56:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-08 15:56:28] MINIPC-PN51-E1
[2025-10-08 15:56:28] apptainer works
[2025-10-08 15:56:28] Set ATHENA_PROC_NUMBER=12
[2025-10-08 15:56:28] Set ATHENA_CORE_NUMBER=12
[2025-10-08 15:56:28] Starting ATLAS job with PandaID=6832673670
[2025-10-08 15:56:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-08 17:04:52]  *** The last 200 lines of the pilot log: ***
[2025-10-08 17:04:52]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6832673670/log.46376905._111658.job.log.tgz.1
[2025-10-08 17:04:52]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b6/06/log.46376905._111658.job.log.tgz.1
[2025-10-08 17:04:52]  workdir=None
[2025-10-08 17:04:52] ]
[2025-10-08 17:04:52] 2025-10-08 06:03:47,232 | INFO     | transferring file log.46376905._111658.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6832673670/log.46376905._111658.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-08 17:04:52] 2025-10-08 06:03:47,233 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6832673670/log.46376905._111658.job.log.tgz.1 /var/lib/boinc/slots/0/log.46376905._111658.job
[2025-10-08 17:04:52] 2025-10-08 06:03:47,248 | INFO     | adding to output.list: log.46376905._111658.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b6/06/log.46376905._111658.job.log.tg
[2025-10-08 17:04:52] 2025-10-08 06:03:47,248 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-08 17:04:52] 2025-10-08 06:03:47,248 | INFO     | summary of transferred files:
[2025-10-08 17:04:52] 2025-10-08 06:03:47,248 | INFO     |  -- lfn=log.46376905._111658.job.log.tgz.1, status_code=0, status=transferred
[2025-10-08 17:04:52] 2025-10-08 06:03:47,248 | INFO     | stage-out finished correctly
[2025-10-08 17:04:52] 2025-10-08 06:03:47,297 | INFO     | time since job start (4027s) is within the limit (172800.0s)
[2025-10-08 17:04:52] 2025-10-08 06:03:49,303 | INFO     | time since job start (4029s) is within the limit (172800.0s)
[2025-10-08 17:04:52] 2025-10-08 06:03:49,371 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-08 17:04:52] 2025-10-08 06:03:49,423 | INFO     | job 6832673670 has state=finished
[2025-10-08 17:04:52] 2025-10-08 06:03:49,423 | INFO     | preparing for final server update for job 6832673670 in state='finished'
[2025-10-08 17:04:52] 2025-10-08 06:03:50,571 | WARNING  | process 101762 can no longer be monitored (due to stat problems) - aborting
[2025-10-08 17:04:52] 2025-10-08 06:03:50,572 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6832673670/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 17:04:52] 2025-10-08 06:03:50,638 | INFO     | number of running child processes to parent process 101762: 1
[2025-10-08 17:04:52] 2025-10-08 06:03:50,638 | INFO     | maximum number of monitored processes: 6
[2025-10-08 17:04:52] 2025-10-08 06:03:50,718 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-08 17:04:52] 2025-10-08 06:03:50,719 | INFO     | this job has now completed (state=finished)
[2025-10-08 17:04:52] 2025-10-08 06:03:50,719 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-08 17:04:52] 2025-10-08 06:03:50,719 | INFO     | log transfer has been attempted: DONE
[2025-10-08 17:04:52] 2025-10-08 06:03:50,719 | INFO     | job 6832673670 has finished - writing final server update
[2025-10-08 17:04:52] 2025-10-08 06:03:50,719 | INFO     | total number of processed events: 400 (read)
[2025-10-08 17:04:52] 2025-10-08 06:03:50,722 | INFO     | executing command: lscpu
[2025-10-08 17:04:52] 2025-10-08 06:03:50,748 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-08 17:04:52] 2025-10-08 06:03:51,309 | INFO     | time since job start (4031s) is within the limit (172800.0s)
[2025-10-08 17:04:52] 2025-10-08 06:03:53,141 | INFO     | monitor loop #302: job 0:6832673670 is in state 'finished'
[2025-10-08 17:04:52] 2025-10-08 06:03:53,141 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 17:04:52] 2025-10-08 06:03:53,315 | INFO     | time since job start (4033s) is within the limit (172800.0s)
[2025-10-08 17:04:52] 2025-10-08 06:03:55,319 | INFO     | time since job start (4035s) is within the limit (172800.0s)
[2025-10-08 17:04:52] 2025-10-08 06:03:55,644 | INFO     | monitor loop #303: job 0:6832673670 is in state 'finished'
[2025-10-08 17:04:52] 2025-10-08 06:03:55,644 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-08 17:04:52] 2025-10-08 06:03:57,324 | INFO     | time since job start (4037s) is within the limit (172800.0s)
[2025-10-08 17:04:52] 2025-10-08 06:03:57,770 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-08 17:04:52] 2025-10-08 06:03:57,772 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 2262.602625
[2025-10-08 17:04:52] 2025-10-08 06:03:57,774 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6832673670/memory_monitor_summary.json (trf name=prmon)
[2025-10-08 17:04:52] 2025-10-08 06:03:57,775 | INFO     | extracted standard info from prmon json
[2025-10-08 17:04:52] 2025-10-08 06:03:57,775 | INFO     | extracted standard memory fields from prmon json
[2025-10-08 17:04:52] 2025-10-08 06:03:57,775 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-08 17:04:52] 2025-10-08 06:03:57,775 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-08 17:04:52] 2025-10-08 06:03:57,775 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-08 17:04:52] 2025-10-08 06:03:57,777 | INFO     | fitting pss+swap vs Time
[2025-10-08 17:04:52] 2025-10-08 06:03:57,777 | INFO     | sum of square deviations: 63666310.0
[2025-10-08 17:04:52] 2025-10-08 06:03:57,777 | INFO     | sum of deviations: -7639157795.0
[2025-10-08 17:04:52] 2025-10-08 06:03:57,777 | INFO     | mean x: 1759901499.0
[2025-10-08 17:04:52] 2025-10-08 06:03:57,777 | INFO     | mean y: 2827196.3898305083
[2025-10-08 17:04:52] 2025-10-08 06:03:57,777 | INFO     | -- intersect: 211168909454.3067
[2025-10-08 17:04:52] 2025-10-08 06:03:57,777 | INFO     | intersect: 211168909454.3067
[2025-10-08 17:04:52] 2025-10-08 06:03:57,777 | INFO     | chi2: 0.11566950539521617
[2025-10-08 17:04:52] 2025-10-08 06:03:57,777 | INFO     | -- intersect: 211168909454.3067
[2025-10-08 17:04:52] 2025-10-08 06:03:57,777 | INFO     | current memory leak: -119.99 B/s (using 59 data points, chi2=0.12)
[2025-10-08 17:04:52] 2025-10-08 06:03:57,778 | INFO     | could have reported an average CPU frequency of 2610 MHz (6 samples)
[2025-10-08 17:04:52] 2025-10-08 06:03:57,778 | INFO     | ..............................
[2025-10-08 17:04:52] 2025-10-08 06:03:57,778 | INFO     | . Timing measurements:
[2025-10-08 17:04:52] 2025-10-08 06:03:57,778 | INFO     | . get job = 0 s
[2025-10-08 17:04:52] 2025-10-08 06:03:57,778 | INFO     | . initial setup = 5 s
[2025-10-08 17:04:52] 2025-10-08 06:03:57,778 | INFO     | . payload setup = 4 s
[2025-10-08 17:04:52] 2025-10-08 06:03:57,778 | INFO     | . stage-in = 0 s
[2025-10-08 17:04:52] 2025-10-08 06:03:57,778 | INFO     | . payload execution = 4003 s
[2025-10-08 17:04:52] 2025-10-08 06:03:57,778 | INFO     | . stage-out = 0 s
[2025-10-08 17:04:52] 2025-10-08 06:03:57,778 | INFO     | . log creation = 0 s
[2025-10-08 17:04:52] 2025-10-08 06:03:57,778 | INFO     | ..............................
[2025-10-08 17:04:52] 2025-10-08 06:03:58,108 | INFO     | 
[2025-10-08 17:04:52] 2025-10-08 06:03:58,108 | INFO     | job summary report
[2025-10-08 17:04:52] 2025-10-08 06:03:58,108 | INFO     | --------------------------------------------------
[2025-10-08 17:04:52] 2025-10-08 06:03:58,108 | INFO     | PanDA job id: 6832673670
[2025-10-08 17:04:52] 2025-10-08 06:03:58,108 | INFO     | task id: 46376905
[2025-10-08 17:04:52] 2025-10-08 06:03:58,108 | INFO     | errors: (none)
[2025-10-08 17:04:52] 2025-10-08 06:03:58,108 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-08 17:04:52] 2025-10-08 06:03:58,108 | INFO     | pilot state: finished 
[2025-10-08 17:04:52] 2025-10-08 06:03:58,108 | INFO     | transexitcode: 0
[2025-10-08 17:04:52] 2025-10-08 06:03:58,109 | INFO     | exeerrorcode: 0
[2025-10-08 17:04:52] 2025-10-08 06:03:58,109 | INFO     | exeerrordiag: 
[2025-10-08 17:04:52] 2025-10-08 06:03:58,109 | INFO     | exitcode: 0
[2025-10-08 17:04:52] 2025-10-08 06:03:58,109 | INFO     | exitmsg: OK
[2025-10-08 17:04:52] 2025-10-08 06:03:58,109 | INFO     | cpuconsumptiontime: 42093 s
[2025-10-08 17:04:52] 2025-10-08 06:03:58,109 | INFO     | nevents: 400
[2025-10-08 17:04:52] 2025-10-08 06:03:58,109 | INFO     | neventsw: 0
[2025-10-08 17:04:52] 2025-10-08 06:03:58,109 | INFO     | pid: 101762
[2025-10-08 17:04:52] 2025-10-08 06:03:58,109 | INFO     | pgrp: 101762
[2025-10-08 17:04:52] 2025-10-08 06:03:58,109 | INFO     | corecount: 12
[2025-10-08 17:04:52] 2025-10-08 06:03:58,109 | INFO     | event service: False
[2025-10-08 17:04:52] 2025-10-08 06:03:58,109 | INFO     | sizes: {0: 2348820, 3: 2349082, 11: 2349110, 4011: 2375060, 4012: 2384058, 4014: 2384114, 4022: 2384436}
[2025-10-08 17:04:52] 2025-10-08 06:03:58,109 | INFO     | --------------------------------------------------
[2025-10-08 17:04:52] 2025-10-08 06:03:58,109 | INFO     | 
[2025-10-08 17:04:52] 2025-10-08 06:03:58,109 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-08 17:04:52] 2025-10-08 06:03:58,145 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-08 17:04:52] 2025-10-08 06:03:58,145 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-08 17:04:52] 2025-10-08 06:03:58,145 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-08 17:04:52] 2025-10-08 06:03:58,145 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-08 17:04:52] 2025-10-08 06:03:58,145 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-08 17:04:52] 2025-10-08 06:03:58,145 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-08 17:04:52] 2025-10-08 06:03:58,145 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-08 17:04:52] 2025-10-08 06:03:58,145 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-08 17:04:52] 2025-10-08 06:03:58,145 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-08 17:04:52] 2025-10-08 06:03:58,145 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-08 17:04:52] 2025-10-08 06:03:58,146 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-08 17:04:52] 2025-10-08 06:03:58,146 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-08 17:04:52] 2025-10-08 06:03:58,146 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-08 17:04:52] 2025-10-08 06:03:58,146 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-08 17:04:52] 2025-10-08 06:03:58,146 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-08 17:04:52] 2025-10-08 06:03:58,146 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-08 17:04:52] 2025-10-08 06:03:58,146 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-08 17:04:52] 2025-10-08 06:03:58,146 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-08 17:04:52] 2025-10-08 06:03:58,146 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-08 17:04:52] 2025-10-08 06:03:58,146 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-08 17:04:52] 2025-10-08 06:03:58,146 | INFO     | job 6832673670 has completed (purged errors)
[2025-10-08 17:04:52] 2025-10-08 06:03:58,146 | INFO     | overall cleanup function is called
[2025-10-08 17:04:52] 2025-10-08 06:03:59,154 | INFO     | --- collectZombieJob: --- 10, [101762]
[2025-10-08 17:04:52] 2025-10-08 06:03:59,154 | INFO     | zombie collector waiting for pid 101762
[2025-10-08 17:04:52] 2025-10-08 06:03:59,154 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-08 17:04:52] 2025-10-08 06:03:59,154 | INFO     | collected zombie processes
[2025-10-08 17:04:52] 2025-10-08 06:03:59,154 | INFO     | will attempt to kill all subprocesses of pid=101762
[2025-10-08 17:04:52] 2025-10-08 06:03:59,222 | INFO     | process IDs to be killed: [101762] (in reverse order)
[2025-10-08 17:04:52] 2025-10-08 06:03:59,270 | WARNING  | found no corresponding commands to process id(s)
[2025-10-08 17:04:52] 2025-10-08 06:03:59,271 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-08 17:04:52] 2025-10-08 06:03:59,274 | INFO     | did not find any defunct processes belonging to 101762
[2025-10-08 17:04:52] 2025-10-08 06:03:59,277 | INFO     | did not find any defunct processes belonging to 101762
[2025-10-08 17:04:52] 2025-10-08 06:03:59,277 | INFO     | ready for new job
[2025-10-08 17:04:52] 2025-10-08 06:03:59,277 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-08 17:04:52] 2025-10-08 06:03:59,278 | INFO     | ***************************************
[2025-10-08 17:04:52] 2025-10-08 06:03:59,278 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-08 17:04:52] 2025-10-08 06:03:59,278 | INFO     | ***************************************
[2025-10-08 17:04:52] 2025-10-08 06:03:59,278 | INFO     | 
[2025-10-08 17:04:52] 2025-10-08 06:03:59,279 | INFO     | architecture information:
[2025-10-08 17:04:52] 2025-10-08 06:03:59,280 | INFO     | executing command: cat /etc/os-release
[2025-10-08 17:04:52] 2025-10-08 06:03:59,297 | INFO     | cat /etc/os-release:
[2025-10-08 17:04:52] NAME="CentOS Linux"
[2025-10-08 17:04:52] VERSION="7 (Core)"
[2025-10-08 17:04:52] ID="centos"
[2025-10-08 17:04:52] ID_LIKE="rhel fedora"
[2025-10-08 17:04:52] VERSION_ID="7"
[2025-10-08 17:04:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-08 17:04:52] ANSI_COLOR="0;31"
[2025-10-08 17:04:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-08 17:04:52] HOME_URL="https://www.centos.org/"
[2025-10-08 17:04:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-08 17:04:52] 
[2025-10-08 17:04:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-08 17:04:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-08 17:04:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-08 17:04:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-08 17:04:52] 
[2025-10-08 17:04:52] 2025-10-08 06:03:59,297 | INFO     | ***************************************
[2025-10-08 17:04:52] 2025-10-08 06:03:59,800 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-08 17:04:52] 2025-10-08 06:03:59,819 | INFO     | sufficient remaining disk space (408818810880 B)
[2025-10-08 17:04:52] 2025-10-08 06:03:59,819 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-08 17:04:52] 2025-10-08 06:03:59,819 | INFO     | current server update state: UPDATING_FINAL
[2025-10-08 17:04:52] 2025-10-08 06:03:59,819 | INFO     | update_server=False
[2025-10-08 17:04:52] 2025-10-08 06:03:59,819 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-08 17:04:52] 2025-10-08 06:03:59,820 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-08 17:04:52] 2025-10-08 06:03:59,820 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-08 17:04:52] 2025-10-08 06:03:59,820 | INFO     | aborting loop
[2025-10-08 17:04:52] 2025-10-08 06:03:59,932 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-08 17:04:52] 2025-10-08 06:04:00,052 | INFO     | all data control threads have been joined
[2025-10-08 17:04:52] 2025-10-08 06:04:00,312 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-08 17:04:52] 2025-10-08 06:04:00,432 | INFO     | all payload control threads have been joined
[2025-10-08 17:04:52] 2025-10-08 06:04:00,825 | INFO     | [job] retrieve thread has finished
[2025-10-08 17:04:52] 2025-10-08 06:04:00,825 | INFO     | [job] job monitor thread has finished
[2025-10-08 17:04:52] 2025-10-08 06:04:00,825 | INFO     | [job] queue monitor thread has finished
[2025-10-08 17:04:52] 2025-10-08 06:04:00,959 | INFO     | all job control threads have been joined
[2025-10-08 17:04:52] 2025-10-08 06:04:01,029 | INFO     | [payload] failed_post thread has finished
[2025-10-08 17:04:52] 2025-10-08 06:04:01,046 | INFO     | [job] create_data_payload thread has finished
[2025-10-08 17:04:52] 2025-10-08 06:04:01,058 | INFO     | [data] control thread has finished
[2025-10-08 17:04:52] 2025-10-08 06:04:01,076 | INFO     | [data] copytool_in thread has finished
[2025-10-08 17:04:52] 2025-10-08 06:04:01,261 | INFO     | [payload] validate_pre thread has finished
[2025-10-08 17:04:52] 2025-10-08 06:04:01,315 | INFO     | [payload] execute_payloads thread has finished
[2025-10-08 17:04:52] 2025-10-08 06:04:01,438 | INFO     | [payload] control thread has finished
[2025-10-08 17:04:52] 2025-10-08 06:04:01,964 | INFO     | [job] control thread has finished
[2025-10-08 17:04:52] 2025-10-08 06:04:02,227 | INFO     | [job] validate thread has finished
[2025-10-08 17:04:52] 2025-10-08 06:04:02,250 | INFO     | [payload] validate_post thread has finished
[2025-10-08 17:04:52] 2025-10-08 06:04:02,318 | INFO     | [data] copytool_out thread has finished
[2025-10-08 17:04:52] 2025-10-08 06:04:03,938 | INFO     | [data] queue_monitor thread has finished
[2025-10-08 17:04:52] 2025-10-08 06:04:10,665 | INFO     | job.realtimelogging is not enabled
[2025-10-08 17:04:52] 2025-10-08 06:04:11,671 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-08 17:04:52] 2025-10-08 06:04:30,507 | INFO     | PID=93933 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-08 17:04:52] 2025-10-08 06:04:30,507 | INFO     | found 0 job(s) in 20 queues
[2025-10-08 17:04:52] 2025-10-08 06:04:30,507 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-08 17:04:52] 2025-10-08 06:04:30,507 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-08 17:04:52] 2025-10-08 06:04:46,655 | INFO     | [monitor] cgroup control has ended
[2025-10-08 17:04:52] 2025-10-08 06:04:47,498 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 123438738519872)>', '<ExcThread(monitor, started 123437846599424)>']
[2025-10-08 17:04:52] 2025-10-08 06:04:47,591 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-08 17:04:52] 2025-10-08 06:04:47,591 | INFO     | [monitor] control thread has ended
[2025-10-08 17:04:52] 2025-10-08 06:04:52,524 | INFO     | all workflow threads have been joined
[2025-10-08 17:04:52] 2025-10-08 06:04:52,524 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-08 17:04:52] 2025-10-08 06:04:52,524 | INFO     | traces error code: 0
[2025-10-08 17:04:52] 2025-10-08 06:04:52,525 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-08 17:04:52] 2025-10-08 06:04:52,656 [wrapper] ==== pilot stdout END ====
[2025-10-08 17:04:52] 2025-10-08 06:04:52,659 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-08 17:04:52] 2025-10-08 06:04:52,661 [wrapper] pilotpid: 93933
[2025-10-08 17:04:52] 2025-10-08 06:04:52,663 [wrapper] Pilot exit status: 0
[2025-10-08 17:04:52] 2025-10-08 06:04:52,672 [wrapper] pandaids: 6832673670
[2025-10-08 17:04:52] 2025-10-08 06:04:52,699 [wrapper] cleanup supervisor_pilot  205572 93934
[2025-10-08 17:04:52] 2025-10-08 06:04:52,701 [wrapper] Test setup, not cleaning
[2025-10-08 17:04:52] 2025-10-08 06:04:52,704 [wrapper] apfmon messages muted
[2025-10-08 17:04:52] 2025-10-08 06:04:52,707 [wrapper] ==== wrapper stdout END ====
[2025-10-08 17:04:52] 2025-10-08 06:04:52,710 [wrapper] ==== wrapper stderr END ====
[2025-10-08 17:04:52]  *** Error codes and diagnostics ***
[2025-10-08 17:04:52]     "exeErrorCode": 0,
[2025-10-08 17:04:52]     "exeErrorDiag": "",
[2025-10-08 17:04:52]     "pilotErrorCode": 0,
[2025-10-08 17:04:52]     "pilotErrorDiag": "",
[2025-10-08 17:04:52]  *** Listing of results directory ***
[2025-10-08 17:04:52] total 389028
[2025-10-08 17:04:52] -rw-r--r-- 1 boinc boinc    552446 Oct  6 23:44 pilot3.tar.gz
[2025-10-08 17:04:52] -rwx------ 1 boinc boinc     36292 Oct  6 23:45 runpilot2-wrapper.sh
[2025-10-08 17:04:52] -rw-r--r-- 1 boinc boinc      5112 Oct  6 23:45 queuedata.json
[2025-10-08 17:04:52] -rw-r--r-- 1 boinc boinc       100 Oct  8 15:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-08 17:04:52] -rwxr-xr-x 1 boinc boinc      7986 Oct  8 15:56 run_atlas
[2025-10-08 17:04:52] -rw-r--r-- 1 boinc boinc       105 Oct  8 15:56 job.xml
[2025-10-08 17:04:52] -rw-r--r-- 2 boinc boinc 213620510 Oct  8 15:56 EVNT.46376901._004140.pool.root.1
[2025-10-08 17:04:52] -rw-r--r-- 2 boinc boinc    565595 Oct  8 15:56 input.tar.gz
[2025-10-08 17:04:52] -rw-r--r-- 2 boinc boinc     15120 Oct  8 15:56 start_atlas.sh
[2025-10-08 17:04:52] drwxrwx--x 2 boinc boinc      4096 Oct  8 15:56 shared
[2025-10-08 17:04:52] -rw-r--r-- 1 boinc boinc         0 Oct  8 15:56 boinc_setup_complete
[2025-10-08 17:04:52] -rw-r--r-- 1 boinc boinc      9348 Oct  8 15:56 init_data.xml
[2025-10-08 17:04:52] -rw-r--r-- 1 boinc boinc         0 Oct  8 15:56 boinc_lockfile
[2025-10-08 17:04:52] -rw-r--r-- 1 boinc boinc      2521 Oct  8 15:56 pandaJob.out
[2025-10-08 17:04:52] -rw------- 1 boinc boinc    979841 Oct  8 15:56 agis_schedconf.cvmfs.json
[2025-10-08 17:04:52] -rw------- 1 boinc boinc   1560401 Oct  8 15:56 agis_ddmendpoints.agis.ALL.json
[2025-10-08 17:04:52] drwx------ 4 boinc boinc      4096 Oct  8 15:56 pilot3
[2025-10-08 17:04:52] -rw------- 1 boinc boinc 178915283 Oct  8 17:03 HITS.46376905._111658.pool.root.1
[2025-10-08 17:04:52] -rw-r--r-- 1 boinc boinc       529 Oct  8 17:03 boinc_task_state.xml
[2025-10-08 17:04:52] -rw------- 1 boinc boinc        95 Oct  8 17:03 pilot_heartbeat.json
[2025-10-08 17:04:52] -rw------- 1 boinc boinc      1017 Oct  8 17:03 memory_monitor_summary.json
[2025-10-08 17:04:52] -rw------- 1 boinc boinc    377639 Oct  8 17:03 log.46376905._111658.job.log.tgz.1
[2025-10-08 17:04:52] -rw------- 1 boinc boinc      7780 Oct  8 17:03 heartbeat.json
[2025-10-08 17:04:52] -rw-r--r-- 1 boinc boinc      8192 Oct  8 17:04 boinc_mmap_file
[2025-10-08 17:04:52] -rw-r--r-- 1 boinc boinc        27 Oct  8 17:04 wrapper_checkpoint.txt
[2025-10-08 17:04:52] -rw------- 1 boinc boinc      4819 Oct  8 17:04 pilotlog.txt
[2025-10-08 17:04:52] -rw------- 1 boinc boinc    589085 Oct  8 17:04 log.46376905._111658.job.log.1
[2025-10-08 17:04:52] -rw------- 1 boinc boinc       357 Oct  8 17:04 output.list
[2025-10-08 17:04:52] -rw-r--r-- 1 boinc boinc       620 Oct  8 17:04 runtime_log
[2025-10-08 17:04:52] -rw------- 1 boinc boinc    983040 Oct  8 17:04 result.tar.gz
[2025-10-08 17:04:52] -rw-r--r-- 1 boinc boinc      8703 Oct  8 17:04 runtime_log.err
[2025-10-08 17:04:52] -rw------- 1 boinc boinc       650 Oct  8 17:04 iKiNDmflzP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm6WTNDm6aM77m.diag
[2025-10-08 17:04:52] -rw-r--r-- 1 boinc boinc     21935 Oct  8 17:04 stderr.txt
[2025-10-08 17:04:52] HITS file was successfully produced:
[2025-10-08 17:04:52] -rw------- 1 boinc boinc 178915283 Oct  8 17:03 shared/HITS.pool.root.1
[2025-10-08 17:04:52]  *** Contents of shared directory: ***
[2025-10-08 17:04:52] total 384880
[2025-10-08 17:04:52] -rw-r--r-- 2 boinc boinc 213620510 Oct  8 15:56 ATLAS.root_0
[2025-10-08 17:04:52] -rw-r--r-- 2 boinc boinc    565595 Oct  8 15:56 input.tar.gz
[2025-10-08 17:04:52] -rw-r--r-- 2 boinc boinc     15120 Oct  8 15:56 start_atlas.sh
[2025-10-08 17:04:52] -rw------- 1 boinc boinc 178915283 Oct  8 17:03 HITS.pool.root.1
[2025-10-08 17:04:52] -rw------- 1 boinc boinc    983040 Oct  8 17:04 result.tar.gz
17:04:54 (90083): run_atlas exited; CPU time 42054.319506
17:04:54 (90083): called boinc_finish(0)

</stderr_txt>
]]>

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