Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
20:31:48 (952337): wrapper (7.7.26015): starting
20:31:48 (952337): wrapper: running run_atlas (--nthreads 4)
[2025-10-06 20:31:48] Arguments: --nthreads 4
[2025-10-06 20:31:48] Threads: 4
[2025-10-06 20:31:48] Checking for CVMFS
[2025-10-06 20:31:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-06 20:31:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-06 20:31:48] Running cvmfs_config stat atlas.cern.ch
[2025-10-06 20:31:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-06 20:31:48] 2.13.2.0 3444804 2879 58940 151410 3 188 3735659 6144000 6412 130560 0 15949624 99.999 96159 1609 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-06 20:31:48] CVMFS is ok
[2025-10-06 20:31:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-06 20:31:48] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-06 20:31:48] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-06 20:31:48] Further information can be found at the LHC@home message board.
[2025-10-06 20:31:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-06 20:31:48] Checking for apptainer binary...
[2025-10-06 20:31:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-06 20:31:48] Running /usr/bin/apptainer --version
[2025-10-06 20:31:48] apptainer version 1.4.2
[2025-10-06 20:31:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-06 20:31:48] a100-garage
[2025-10-06 20:31:48] apptainer works
[2025-10-06 20:31:48] Set ATHENA_PROC_NUMBER=4
[2025-10-06 20:31:48] Set ATHENA_CORE_NUMBER=4
[2025-10-06 20:31:49] Starting ATLAS job with PandaID=6832198843
[2025-10-06 20:31:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ian/BOINC/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-06 22:13:22]  *** The last 200 lines of the pilot log: ***
[2025-10-06 22:13:22]  mtime=0
[2025-10-06 22:13:22]  protocol_id=None
[2025-10-06 22:13:22]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-06 22:13:22]  replicas=None
[2025-10-06 22:13:22]  scope=mc23_13p6TeV
[2025-10-06 22:13:22]  status=None
[2025-10-06 22:13:22]  status_code=0
[2025-10-06 22:13:22]  storage_token=
[2025-10-06 22:13:22]  surl=/home/ian/BOINC/slots/10/PanDA_Pilot-6832198843/log.46376905._100758.job.log.tgz.1
[2025-10-06 22:13:22]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0e/50/log.46376905._100758.job.log.tgz.1
[2025-10-06 22:13:22]  workdir=None
[2025-10-06 22:13:22] ]
[2025-10-06 22:13:22] 2025-10-06 22:12:43,913 | INFO     | transferring file log.46376905._100758.job.log.tgz.1 from /home/ian/BOINC/slots/10/PanDA_Pilot-6832198843/log.46376905._100758.job.log.tgz.1 to /home/ian/BOINC/slo
[2025-10-06 22:13:22] 2025-10-06 22:12:43,913 | INFO     | executing command: /usr/bin/env mv /home/ian/BOINC/slots/10/PanDA_Pilot-6832198843/log.46376905._100758.job.log.tgz.1 /home/ian/BOINC/slots/10/log.46376905._100758
[2025-10-06 22:13:22] 2025-10-06 22:12:43,936 | INFO     | adding to output.list: log.46376905._100758.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0e/50/log.46376905._100758.job.log.tg
[2025-10-06 22:13:22] 2025-10-06 22:12:43,937 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-06 22:13:22] 2025-10-06 22:12:43,937 | INFO     | summary of transferred files:
[2025-10-06 22:13:22] 2025-10-06 22:12:43,937 | INFO     |  -- lfn=log.46376905._100758.job.log.tgz.1, status_code=0, status=transferred
[2025-10-06 22:13:22] 2025-10-06 22:12:43,937 | INFO     | stage-out finished correctly
[2025-10-06 22:13:22] 2025-10-06 22:12:44,081 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-06 22:13:22] 2025-10-06 22:12:44,630 | INFO     | time since job start (6045s) is within the limit (172800.0s)
[2025-10-06 22:13:22] 2025-10-06 22:12:44,918 | INFO     | monitor loop #454: job 0:6832198843 is in state 'finished'
[2025-10-06 22:13:22] 2025-10-06 22:12:44,918 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 22:13:22] 2025-10-06 22:12:45,178 | INFO     | job 6832198843 has state=finished
[2025-10-06 22:13:22] 2025-10-06 22:12:45,178 | INFO     | preparing for final server update for job 6832198843 in state='finished'
[2025-10-06 22:13:22] 2025-10-06 22:12:45,179 | INFO     | this job has now completed (state=finished)
[2025-10-06 22:13:22] 2025-10-06 22:12:45,179 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-06 22:13:22] 2025-10-06 22:12:45,179 | INFO     | log transfer has been attempted: DONE
[2025-10-06 22:13:22] 2025-10-06 22:12:45,179 | INFO     | job 6832198843 has finished - writing final server update
[2025-10-06 22:13:22] 2025-10-06 22:12:45,179 | INFO     | total number of processed events: 400 (read)
[2025-10-06 22:13:22] 2025-10-06 22:12:45,180 | INFO     | executing command: lscpu
[2025-10-06 22:13:22] 2025-10-06 22:12:45,221 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-06 22:13:22] 2025-10-06 22:12:46,635 | INFO     | time since job start (6047s) is within the limit (172800.0s)
[2025-10-06 22:13:22] 2025-10-06 22:12:47,421 | INFO     | monitor loop #455: job 0:6832198843 is in state 'finished'
[2025-10-06 22:13:22] 2025-10-06 22:12:47,421 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 22:13:22] 2025-10-06 22:12:48,641 | INFO     | time since job start (6049s) is within the limit (172800.0s)
[2025-10-06 22:13:22] 2025-10-06 22:12:49,137 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-06 22:13:22] 2025-10-06 22:12:49,143 | INFO     | found 24 cores (24 cores per socket, 1 socket) HT, CPU MHz: 3425.308791666666
[2025-10-06 22:13:22] 2025-10-06 22:12:49,150 | INFO     | using path: /home/ian/BOINC/slots/10/PanDA_Pilot-6832198843/memory_monitor_summary.json (trf name=prmon)
[2025-10-06 22:13:22] 2025-10-06 22:12:49,150 | INFO     | extracted standard info from prmon json
[2025-10-06 22:13:22] 2025-10-06 22:12:49,150 | INFO     | extracted standard memory fields from prmon json
[2025-10-06 22:13:22] 2025-10-06 22:12:49,150 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-06 22:13:22] 2025-10-06 22:12:49,151 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-06 22:13:22] 2025-10-06 22:12:49,151 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-06 22:13:22] 2025-10-06 22:12:49,153 | INFO     | fitting pss+swap vs Time
[2025-10-06 22:13:22] 2025-10-06 22:12:49,153 | INFO     | sum of square deviations: 241429643.0
[2025-10-06 22:13:22] 2025-10-06 22:12:49,153 | INFO     | sum of deviations: -5306294656.999998
[2025-10-06 22:13:22] 2025-10-06 22:12:49,153 | INFO     | mean x: 1759785824.5
[2025-10-06 22:13:22] 2025-10-06 22:12:49,153 | INFO     | mean y: 2353136.2608695654
[2025-10-06 22:13:22] 2025-10-06 22:12:49,153 | INFO     | -- intersect: 38680048227.78153
[2025-10-06 22:13:22] 2025-10-06 22:12:49,153 | INFO     | intersect: 38680048227.78153
[2025-10-06 22:13:22] 2025-10-06 22:12:49,154 | INFO     | chi2: 0.011815078202664357
[2025-10-06 22:13:22] 2025-10-06 22:12:49,154 | INFO     | -- intersect: 38680048227.78153
[2025-10-06 22:13:22] 2025-10-06 22:12:49,154 | INFO     | current memory leak: -21.98 B/s (using 92 data points, chi2=0.01)
[2025-10-06 22:13:22] 2025-10-06 22:12:49,154 | INFO     | could have reported an average CPU frequency of 3418 MHz (7 samples)
[2025-10-06 22:13:22] 2025-10-06 22:12:49,154 | INFO     | ..............................
[2025-10-06 22:13:22] 2025-10-06 22:12:49,154 | INFO     | . Timing measurements:
[2025-10-06 22:13:22] 2025-10-06 22:12:49,154 | INFO     | . get job = 0 s
[2025-10-06 22:13:22] 2025-10-06 22:12:49,154 | INFO     | . initial setup = 2 s
[2025-10-06 22:13:22] 2025-10-06 22:12:49,154 | INFO     | . payload setup = 5 s
[2025-10-06 22:13:22] 2025-10-06 22:12:49,154 | INFO     | . stage-in = 0 s
[2025-10-06 22:13:22] 2025-10-06 22:12:49,154 | INFO     | . payload execution = 6019 s
[2025-10-06 22:13:22] 2025-10-06 22:12:49,154 | INFO     | . stage-out = 0 s
[2025-10-06 22:13:22] 2025-10-06 22:12:49,155 | INFO     | . log creation = 0 s
[2025-10-06 22:13:22] 2025-10-06 22:12:49,155 | INFO     | ..............................
[2025-10-06 22:13:22] 2025-10-06 22:12:49,228 | INFO     | 
[2025-10-06 22:13:22] 2025-10-06 22:12:49,228 | INFO     | job summary report
[2025-10-06 22:13:22] 2025-10-06 22:12:49,228 | INFO     | --------------------------------------------------
[2025-10-06 22:13:22] 2025-10-06 22:12:49,228 | INFO     | PanDA job id: 6832198843
[2025-10-06 22:13:22] 2025-10-06 22:12:49,228 | INFO     | task id: 46376905
[2025-10-06 22:13:22] 2025-10-06 22:12:49,228 | INFO     | errors: (none)
[2025-10-06 22:13:22] 2025-10-06 22:12:49,228 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-06 22:13:22] 2025-10-06 22:12:49,228 | INFO     | pilot state: finished 
[2025-10-06 22:13:22] 2025-10-06 22:12:49,228 | INFO     | transexitcode: 0
[2025-10-06 22:13:22] 2025-10-06 22:12:49,228 | INFO     | exeerrorcode: 0
[2025-10-06 22:13:22] 2025-10-06 22:12:49,228 | INFO     | exeerrordiag: 
[2025-10-06 22:13:22] 2025-10-06 22:12:49,228 | INFO     | exitcode: 0
[2025-10-06 22:13:22] 2025-10-06 22:12:49,229 | INFO     | exitmsg: OK
[2025-10-06 22:13:22] 2025-10-06 22:12:49,229 | INFO     | cpuconsumptiontime: 23284 s
[2025-10-06 22:13:22] 2025-10-06 22:12:49,229 | INFO     | nevents: 400
[2025-10-06 22:13:22] 2025-10-06 22:12:49,229 | INFO     | neventsw: 0
[2025-10-06 22:13:22] 2025-10-06 22:12:49,229 | INFO     | pid: 969068
[2025-10-06 22:13:22] 2025-10-06 22:12:49,229 | INFO     | pgrp: 969068
[2025-10-06 22:13:22] 2025-10-06 22:12:49,229 | INFO     | corecount: 4
[2025-10-06 22:13:22] 2025-10-06 22:12:49,229 | INFO     | event service: False
[2025-10-06 22:13:22] 2025-10-06 22:12:49,229 | INFO     | sizes: {0: 2348816, 4: 2349078, 11: 2349106, 6028: 2375937, 6030: 2384995, 6035: 2385133}
[2025-10-06 22:13:22] 2025-10-06 22:12:49,229 | INFO     | --------------------------------------------------
[2025-10-06 22:13:22] 2025-10-06 22:12:49,229 | INFO     | 
[2025-10-06 22:13:22] 2025-10-06 22:12:49,229 | INFO     | executing command: ls -lF /home/ian/BOINC/slots/10
[2025-10-06 22:13:22] 2025-10-06 22:12:49,251 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-06 22:13:22] 2025-10-06 22:12:49,251 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-06 22:13:22] 2025-10-06 22:12:49,251 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-06 22:13:22] 2025-10-06 22:12:49,251 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-06 22:13:22] 2025-10-06 22:12:49,251 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-06 22:13:22] 2025-10-06 22:12:49,252 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-06 22:13:22] 2025-10-06 22:12:49,252 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-06 22:13:22] 2025-10-06 22:12:49,252 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-06 22:13:22] 2025-10-06 22:12:49,252 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-06 22:13:22] 2025-10-06 22:12:49,252 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-06 22:13:22] 2025-10-06 22:12:49,252 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-06 22:13:22] 2025-10-06 22:12:49,252 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-06 22:13:22] 2025-10-06 22:12:49,252 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-06 22:13:22] 2025-10-06 22:12:49,252 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-06 22:13:22] 2025-10-06 22:12:49,252 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-06 22:13:22] 2025-10-06 22:12:49,252 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-06 22:13:22] 2025-10-06 22:12:49,252 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-06 22:13:22] 2025-10-06 22:12:49,252 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-06 22:13:22] 2025-10-06 22:12:49,252 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-06 22:13:22] 2025-10-06 22:12:49,252 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-06 22:13:22] 2025-10-06 22:12:49,253 | INFO     | job 6832198843 has completed (purged errors)
[2025-10-06 22:13:22] 2025-10-06 22:12:49,253 | INFO     | overall cleanup function is called
[2025-10-06 22:13:22] 2025-10-06 22:12:50,260 | INFO     | --- collectZombieJob: --- 10, [969068]
[2025-10-06 22:13:22] 2025-10-06 22:12:50,260 | INFO     | zombie collector waiting for pid 969068
[2025-10-06 22:13:22] 2025-10-06 22:12:50,260 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-06 22:13:22] 2025-10-06 22:12:50,260 | INFO     | collected zombie processes
[2025-10-06 22:13:22] 2025-10-06 22:12:50,260 | INFO     | will attempt to kill all subprocesses of pid=969068
[2025-10-06 22:13:22] 2025-10-06 22:12:50,454 | INFO     | process IDs to be killed: [969068] (in reverse order)
[2025-10-06 22:13:22] 2025-10-06 22:12:50,523 | WARNING  | found no corresponding commands to process id(s)
[2025-10-06 22:13:22] 2025-10-06 22:12:50,523 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-06 22:13:22] 2025-10-06 22:12:50,529 | INFO     | did not find any defunct processes belonging to 969068
[2025-10-06 22:13:22] 2025-10-06 22:12:50,533 | INFO     | did not find any defunct processes belonging to 969068
[2025-10-06 22:13:22] 2025-10-06 22:12:50,534 | INFO     | ready for new job
[2025-10-06 22:13:22] 2025-10-06 22:12:50,534 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-06 22:13:22] 2025-10-06 22:12:50,535 | INFO     | ***************************************
[2025-10-06 22:13:22] 2025-10-06 22:12:50,535 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-06 22:13:22] 2025-10-06 22:12:50,535 | INFO     | ***************************************
[2025-10-06 22:13:22] 2025-10-06 22:12:50,535 | INFO     | 
[2025-10-06 22:13:22] 2025-10-06 22:12:50,537 | INFO     | architecture information:
[2025-10-06 22:13:22] 2025-10-06 22:12:50,537 | INFO     | executing command: cat /etc/os-release
[2025-10-06 22:13:22] 2025-10-06 22:12:50,554 | INFO     | cat /etc/os-release:
[2025-10-06 22:13:22] NAME="CentOS Linux"
[2025-10-06 22:13:22] VERSION="7 (Core)"
[2025-10-06 22:13:22] ID="centos"
[2025-10-06 22:13:22] ID_LIKE="rhel fedora"
[2025-10-06 22:13:22] VERSION_ID="7"
[2025-10-06 22:13:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-06 22:13:22] ANSI_COLOR="0;31"
[2025-10-06 22:13:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-06 22:13:22] HOME_URL="https://www.centos.org/"
[2025-10-06 22:13:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-06 22:13:22] 
[2025-10-06 22:13:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-06 22:13:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-06 22:13:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-06 22:13:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-06 22:13:22] 
[2025-10-06 22:13:22] 2025-10-06 22:12:50,555 | INFO     | ***************************************
[2025-10-06 22:13:22] 2025-10-06 22:12:51,057 | INFO     | executing command: df -mP /home/ian/BOINC/slots/10
[2025-10-06 22:13:22] 2025-10-06 22:12:51,076 | INFO     | sufficient remaining disk space (53644099584 B)
[2025-10-06 22:13:22] 2025-10-06 22:12:51,076 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-06 22:13:22] 2025-10-06 22:12:51,076 | INFO     | current server update state: UPDATING_FINAL
[2025-10-06 22:13:22] 2025-10-06 22:12:51,076 | INFO     | update_server=False
[2025-10-06 22:13:22] 2025-10-06 22:12:51,076 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-06 22:13:22] 2025-10-06 22:12:51,077 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-06 22:13:22] 2025-10-06 22:12:51,077 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-06 22:13:22] 2025-10-06 22:12:51,077 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-06 22:13:22] 2025-10-06 22:12:51,077 | INFO     | aborting loop
[2025-10-06 22:13:22] 2025-10-06 22:12:51,111 | INFO     | all job control threads have been joined
[2025-10-06 22:13:22] 2025-10-06 22:12:51,411 | INFO     | all payload control threads have been joined
[2025-10-06 22:13:22] 2025-10-06 22:12:51,465 | INFO     | all data control threads have been joined
[2025-10-06 22:13:22] 2025-10-06 22:12:52,020 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-06 22:13:22] 2025-10-06 22:12:52,081 | INFO     | [job] retrieve thread has finished
[2025-10-06 22:13:22] 2025-10-06 22:12:52,082 | INFO     | [job] queue monitor thread has finished
[2025-10-06 22:13:22] 2025-10-06 22:12:52,082 | INFO     | [job] job monitor thread has finished
[2025-10-06 22:13:22] 2025-10-06 22:12:52,117 | INFO     | [job] control thread has finished
[2025-10-06 22:13:22] 2025-10-06 22:12:52,416 | INFO     | [payload] control thread has finished
[2025-10-06 22:13:22] 2025-10-06 22:12:52,470 | INFO     | [data] control thread has finished
[2025-10-06 22:13:22] 2025-10-06 22:12:52,647 | INFO     | [data] copytool_in thread has finished
[2025-10-06 22:13:22] 2025-10-06 22:12:52,649 | INFO     | [payload] failed_post thread has finished
[2025-10-06 22:13:22] 2025-10-06 22:12:52,916 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-06 22:13:22] 2025-10-06 22:12:52,979 | INFO     | [job] validate thread has finished
[2025-10-06 22:13:22] 2025-10-06 22:12:53,169 | INFO     | [payload] validate_post thread has finished
[2025-10-06 22:13:22] 2025-10-06 22:12:53,245 | INFO     | [job] create_data_payload thread has finished
[2025-10-06 22:13:22] 2025-10-06 22:12:53,413 | INFO     | [payload] validate_pre thread has finished
[2025-10-06 22:13:22] 2025-10-06 22:12:53,538 | INFO     | [payload] execute_payloads thread has finished
[2025-10-06 22:13:22] 2025-10-06 22:12:54,025 | INFO     | [data] copytool_out thread has finished
[2025-10-06 22:13:22] 2025-10-06 22:12:55,082 | INFO     | [data] queue_monitor thread has finished
[2025-10-06 22:13:22] 2025-10-06 22:13:08,485 | INFO     | [monitor] cgroup control has ended
[2025-10-06 22:13:22] 2025-10-06 22:13:09,520 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 124542213691200)>', '<ExcThread(monitor, started 124541854521088)>']
[2025-10-06 22:13:22] 2025-10-06 22:13:14,545 | INFO     | all workflow threads have been joined
[2025-10-06 22:13:22] 2025-10-06 22:13:14,545 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-06 22:13:22] 2025-10-06 22:13:14,545 | INFO     | traces error code: 0
[2025-10-06 22:13:22] 2025-10-06 22:13:14,545 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-06 22:13:22] 2025-10-06 22:13:21,945 | INFO     | PID=957676 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-06 22:13:22] 2025-10-06 22:13:21,945 | INFO     | .. there are 8 such processes running
[2025-10-06 22:13:22] 2025-10-06 22:13:21,946 | INFO     | found 0 job(s) in 20 queues
[2025-10-06 22:13:22] 2025-10-06 22:13:21,946 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-06 22:13:22] 2025-10-06 22:13:21,946 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-06 22:13:22] 2025-10-06 22:13:21,946 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-06 22:13:22] 2025-10-06 22:13:21,946 | INFO     | [monitor] control thread has ended
[2025-10-06 22:13:22] 2025-10-06 22:13:22,035 [wrapper] ==== pilot stdout END ====
[2025-10-06 22:13:22] 2025-10-06 22:13:22,038 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-06 22:13:22] 2025-10-06 22:13:22,040 [wrapper] pilotpid: 957676
[2025-10-06 22:13:22] 2025-10-06 22:13:22,043 [wrapper] Pilot exit status: 0
[2025-10-06 22:13:22] 2025-10-06 22:13:22,055 [wrapper] pandaids: 6832198843
[2025-10-06 22:13:22] 2025-10-06 22:13:22,106 [wrapper] cleanup supervisor_pilot 2132302 957677
[2025-10-06 22:13:22] 2025-10-06 22:13:22,109 [wrapper] Test setup, not cleaning
[2025-10-06 22:13:22] 2025-10-06 22:13:22,112 [wrapper] apfmon messages muted
[2025-10-06 22:13:22] 2025-10-06 22:13:22,114 [wrapper] ==== wrapper stdout END ====
[2025-10-06 22:13:22] 2025-10-06 22:13:22,117 [wrapper] ==== wrapper stderr END ====
[2025-10-06 22:13:22]  *** Error codes and diagnostics ***
[2025-10-06 22:13:22]     "exeErrorCode": 0,
[2025-10-06 22:13:22]     "exeErrorDiag": "",
[2025-10-06 22:13:22]     "pilotErrorCode": 0,
[2025-10-06 22:13:22]     "pilotErrorDiag": "",
[2025-10-06 22:13:22]  *** Listing of results directory ***
[2025-10-06 22:13:22] total 388444
[2025-10-06 22:13:22] -rw-r--r-- 1 ian ian    552446 Oct  6 00:25 pilot3.tar.gz
[2025-10-06 22:13:22] -rw-r--r-- 1 ian ian      5112 Oct  6 00:31 queuedata.json
[2025-10-06 22:13:22] -rwx------ 1 ian ian     36292 Oct  6 00:31 runpilot2-wrapper.sh
[2025-10-06 22:13:22] -rw-rw-r-- 1 ian ian       100 Oct  6 20:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-06 22:13:22] -rwxr-xr-x 1 ian ian      7986 Oct  6 20:31 run_atlas
[2025-10-06 22:13:22] -rw-rw-r-- 1 ian ian       105 Oct  6 20:31 job.xml
[2025-10-06 22:13:22] -rw-r--r-- 2 ian ian 213184539 Oct  6 20:31 EVNT.46376901._003723.pool.root.1
[2025-10-06 22:13:22] drwxrwx--x 2 ian ian      4096 Oct  6 20:31 shared
[2025-10-06 22:13:22] -rw-r--r-- 2 ian ian    565595 Oct  6 20:31 input.tar.gz
[2025-10-06 22:13:22] -rw-r--r-- 2 ian ian     15120 Oct  6 20:31 start_atlas.sh
[2025-10-06 22:13:22] -rw-rw-r-- 1 ian ian         0 Oct  6 20:31 boinc_setup_complete
[2025-10-06 22:13:22] -rw-rw-r-- 1 ian ian      9256 Oct  6 20:31 init_data.xml
[2025-10-06 22:13:22] -rw-rw-r-- 1 ian ian         0 Oct  6 20:31 boinc_lockfile
[2025-10-06 22:13:22] -rw-rw-r-- 1 ian ian      2518 Oct  6 20:31 pandaJob.out
[2025-10-06 22:13:22] -rw------- 1 ian ian    975026 Oct  6 20:31 agis_schedconf.cvmfs.json
[2025-10-06 22:13:22] -rw------- 1 ian ian   1560401 Oct  6 20:31 agis_ddmendpoints.agis.ALL.json
[2025-10-06 22:13:22] drwx------ 4 ian ian      4096 Oct  6 20:31 pilot3
[2025-10-06 22:13:22] -rw-rw-r-- 1 ian ian       529 Oct  6 22:12 boinc_task_state.xml
[2025-10-06 22:13:22] -rw------- 1 ian ian 178374924 Oct  6 22:12 HITS.46376905._100758.pool.root.1
[2025-10-06 22:13:22] -rw------- 1 ian ian      1023 Oct  6 22:12 memory_monitor_summary.json
[2025-10-06 22:13:22] -rw------- 1 ian ian    272572 Oct  6 22:12 log.46376905._100758.job.log.tgz.1
[2025-10-06 22:13:22] -rw------- 1 ian ian      7738 Oct  6 22:12 heartbeat.json
[2025-10-06 22:13:22] -rw-rw-r-- 1 ian ian      8192 Oct  6 22:13 boinc_mmap_file
[2025-10-06 22:13:22] -rw-rw-r-- 1 ian ian        27 Oct  6 22:13 wrapper_checkpoint.txt
[2025-10-06 22:13:22] -rw------- 1 ian ian       821 Oct  6 22:13 pilotlog.txt
[2025-10-06 22:13:22] -rw------- 1 ian ian        95 Oct  6 22:13 pilot_heartbeat.json
[2025-10-06 22:13:22] -rw------- 1 ian ian    884562 Oct  6 22:13 log.46376905._100758.job.log.1
[2025-10-06 22:13:22] -rw------- 1 ian ian       357 Oct  6 22:13 output.list
[2025-10-06 22:13:22] -rw-rw-r-- 1 ian ian       620 Oct  6 22:13 runtime_log
[2025-10-06 22:13:22] -rw------- 1 ian ian   1177600 Oct  6 22:13 result.tar.gz
[2025-10-06 22:13:22] -rw-rw-r-- 1 ian ian      8735 Oct  6 22:13 runtime_log.err
[2025-10-06 22:13:22] -rw------- 1 ian ian       653 Oct  6 22:13 AGOODmRJoP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmDwRNDmuTt5Gm.diag
[2025-10-06 22:13:22] -rw-rw-r-- 1 ian ian     21726 Oct  6 22:13 stderr.txt
[2025-10-06 22:13:22] HITS file was successfully produced:
[2025-10-06 22:13:22] -rw------- 1 ian ian 178374924 Oct  6 22:12 shared/HITS.pool.root.1
[2025-10-06 22:13:22]  *** Contents of shared directory: ***
[2025-10-06 22:13:22] total 384120
[2025-10-06 22:13:22] -rw-r--r-- 2 ian ian 213184539 Oct  6 20:31 ATLAS.root_0
[2025-10-06 22:13:22] -rw-r--r-- 2 ian ian    565595 Oct  6 20:31 input.tar.gz
[2025-10-06 22:13:22] -rw-r--r-- 2 ian ian     15120 Oct  6 20:31 start_atlas.sh
[2025-10-06 22:13:22] -rw------- 1 ian ian 178374924 Oct  6 22:12 HITS.pool.root.1
[2025-10-06 22:13:22] -rw------- 1 ian ian   1177600 Oct  6 22:13 result.tar.gz
22:13:23 (952337): run_atlas exited; CPU time 23372.193568
22:13:23 (952337): called boinc_finish(0)

</stderr_txt>
]]>

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