Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:54:51 (46387): wrapper (7.7.26015): starting
14:54:51 (46387): wrapper: running run_atlas (--nthreads 11)
[2025-10-06 14:54:51] Arguments: --nthreads 11
[2025-10-06 14:54:51] Threads: 11
[2025-10-06 14:54:51] Checking for CVMFS
[2025-10-06 14:54:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-06 14:54:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-06 14:54:51] Running cvmfs_config stat atlas.cern.ch
[2025-10-06 14:54:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-06 14:54:51] 2.13.2.0 646879 116796 268328 151408 3 554 40563612 40960000 9892 16776704 0 246467856 99.700 197518755 34343 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-06 14:54:51] CVMFS is ok
[2025-10-06 14:54:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-06 14:54:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-06 14:54:51] Further information can be found at the LHC@home message board.
[2025-10-06 14:54:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-06 14:54:51] Checking for apptainer binary...
[2025-10-06 14:54:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-06 14:54:51] Running /usr/bin/apptainer --version
[2025-10-06 14:54:52] apptainer version 1.4.2-1.el9
[2025-10-06 14:54:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-06 14:54:52] c-212-7.aglt2.org
[2025-10-06 14:54:52] apptainer works
[2025-10-06 14:54:52] Set ATHENA_PROC_NUMBER=11
[2025-10-06 14:54:52] Set ATHENA_CORE_NUMBER=11
[2025-10-06 14:54:52] Starting ATLAS job with PandaID=6832634278
[2025-10-06 14:54:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-06 16:00:21]  *** The last 200 lines of the pilot log: ***
[2025-10-06 16:00:21] 2025-10-06 19:59:34,074 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3783364 B
[2025-10-06 16:00:21] 2025-10-06 19:59:34,075 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16032 B
[2025-10-06 16:00:21] 2025-10-06 19:59:34,075 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-06 16:00:21] 2025-10-06 19:59:34,095 | INFO     | sufficient remaining disk space (127775277056 B)
[2025-10-06 16:00:21] 2025-10-06 19:59:34,095 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-06 16:00:21] 2025-10-06 19:59:34,096 | INFO     | size of work directory /tmp/boinchome/slots/1/PanDA_Pilot-6832634278: 4077075 B (within 2537553920 B limit)
[2025-10-06 16:00:21] 2025-10-06 19:59:34,096 | INFO     | pfn file=/tmp/boinchome/slots/1/PanDA_Pilot-6832634278/HITS.46376905._109786.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-06 16:00:21] 2025-10-06 19:59:34,096 | INFO     | total size of present files: 0 B (workdir size: 4077075 B)
[2025-10-06 16:00:21] 2025-10-06 19:59:34,096 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/1/PanDA_Pilot-6832634278/HITS.46376905._109786.pool.root.1 since it does not exist
[2025-10-06 16:00:21] 2025-10-06 19:59:34,510 | INFO     | number of running child processes to parent process 56900: 1
[2025-10-06 16:00:21] 2025-10-06 19:59:34,510 | INFO     | maximum number of monitored processes: 6
[2025-10-06 16:00:21] 2025-10-06 19:59:35,725 | INFO     | time since job start (3866s) is within the limit (172800.0s)
[2025-10-06 16:00:21] 2025-10-06 19:59:35,944 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-06 16:00:21] 2025-10-06 19:59:37,015 | INFO     | monitor loop #267: job 0:6832634278 is in state 'finished'
[2025-10-06 16:00:21] 2025-10-06 19:59:37,016 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 16:00:21] 2025-10-06 19:59:37,730 | INFO     | time since job start (3868s) is within the limit (172800.0s)
[2025-10-06 16:00:21] 2025-10-06 19:59:38,512 | INFO     | job 6832634278 has state=finished
[2025-10-06 16:00:21] 2025-10-06 19:59:38,512 | INFO     | preparing for final server update for job 6832634278 in state='finished'
[2025-10-06 16:00:21] 2025-10-06 19:59:38,513 | INFO     | this job has now completed (state=finished)
[2025-10-06 16:00:21] 2025-10-06 19:59:38,513 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-06 16:00:21] 2025-10-06 19:59:38,513 | INFO     | log transfer has been attempted: DONE
[2025-10-06 16:00:21] 2025-10-06 19:59:38,514 | INFO     | job 6832634278 has finished - writing final server update
[2025-10-06 16:00:21] 2025-10-06 19:59:38,514 | INFO     | total number of processed events: 400 (read)
[2025-10-06 16:00:21] 2025-10-06 19:59:38,514 | INFO     | executing command: lscpu
[2025-10-06 16:00:21] 2025-10-06 19:59:38,568 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-06 16:00:21] 2025-10-06 19:59:39,525 | INFO     | monitor loop #268: job 0:6832634278 is in state 'finished'
[2025-10-06 16:00:21] 2025-10-06 19:59:39,526 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 16:00:21] 2025-10-06 19:59:39,738 | INFO     | time since job start (3870s) is within the limit (172800.0s)
[2025-10-06 16:00:21] 2025-10-06 19:59:41,744 | INFO     | time since job start (3872s) is within the limit (172800.0s)
[2025-10-06 16:00:21] 2025-10-06 19:59:42,041 | INFO     | monitor loop #269: job 0:6832634278 is in state 'finished'
[2025-10-06 16:00:21] 2025-10-06 19:59:42,042 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 16:00:21] 2025-10-06 19:59:43,394 | INFO     | PID=50400 has CPU usage=10.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-06 16:00:21] 2025-10-06 19:59:43,394 | INFO     | .. there are 17 such processes running
[2025-10-06 16:00:21] 2025-10-06 19:59:44,395 | INFO     | time since job start (3875s) is within the limit (172800.0s)
[2025-10-06 16:00:21] 2025-10-06 19:59:44,546 | INFO     | monitor loop #270: job 0:6832634278 is in state 'finished'
[2025-10-06 16:00:21] 2025-10-06 19:59:44,547 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 16:00:21] 2025-10-06 19:59:44,602 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-06 16:00:21] 2025-10-06 19:59:44,610 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3154.3568854166665
[2025-10-06 16:00:21] 2025-10-06 19:59:44,639 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6832634278/memory_monitor_summary.json (trf name=prmon)
[2025-10-06 16:00:21] 2025-10-06 19:59:44,639 | INFO     | extracted standard info from prmon json
[2025-10-06 16:00:21] 2025-10-06 19:59:44,639 | INFO     | extracted standard memory fields from prmon json
[2025-10-06 16:00:21] 2025-10-06 19:59:44,639 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-06 16:00:21] 2025-10-06 19:59:44,640 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-06 16:00:21] 2025-10-06 19:59:44,640 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-06 16:00:21] 2025-10-06 19:59:44,641 | INFO     | fitting pss+swap vs Time
[2025-10-06 16:00:21] 2025-10-06 19:59:44,642 | INFO     | sum of square deviations: 54442507.35714283
[2025-10-06 16:00:21] 2025-10-06 19:59:44,642 | INFO     | sum of deviations: -2947121689.285714
[2025-10-06 16:00:21] 2025-10-06 19:59:44,642 | INFO     | mean x: 1759778929.607143
[2025-10-06 16:00:21] 2025-10-06 19:59:44,642 | INFO     | mean y: 2689273.714285714
[2025-10-06 16:00:21] 2025-10-06 19:59:44,642 | INFO     | -- intersect: 95264331390.43745
[2025-10-06 16:00:21] 2025-10-06 19:59:44,643 | INFO     | intersect: 95264331390.43745
[2025-10-06 16:00:21] 2025-10-06 19:59:44,643 | INFO     | chi2: 0.020534114262602474
[2025-10-06 16:00:21] 2025-10-06 19:59:44,643 | INFO     | -- intersect: 95264331390.43745
[2025-10-06 16:00:21] 2025-10-06 19:59:44,643 | INFO     | current memory leak: -54.13 B/s (using 56 data points, chi2=0.02)
[2025-10-06 16:00:21] 2025-10-06 19:59:44,643 | INFO     | could have reported an average CPU frequency of 3153 MHz (6 samples)
[2025-10-06 16:00:21] 2025-10-06 19:59:44,643 | INFO     | ..............................
[2025-10-06 16:00:21] 2025-10-06 19:59:44,643 | INFO     | . Timing measurements:
[2025-10-06 16:00:21] 2025-10-06 19:59:44,644 | INFO     | . get job = 0 s
[2025-10-06 16:00:21] 2025-10-06 19:59:44,644 | INFO     | . initial setup = 3 s
[2025-10-06 16:00:21] 2025-10-06 19:59:44,644 | INFO     | . payload setup = 9 s
[2025-10-06 16:00:21] 2025-10-06 19:59:44,644 | INFO     | . stage-in = 0 s
[2025-10-06 16:00:21] 2025-10-06 19:59:44,644 | INFO     | . payload execution = 3829 s
[2025-10-06 16:00:21] 2025-10-06 19:59:44,644 | INFO     | . stage-out = 0 s
[2025-10-06 16:00:21] 2025-10-06 19:59:44,644 | INFO     | . log creation = 0 s
[2025-10-06 16:00:21] 2025-10-06 19:59:44,644 | INFO     | ..............................
[2025-10-06 16:00:21] 2025-10-06 19:59:44,726 | INFO     | 
[2025-10-06 16:00:21] 2025-10-06 19:59:44,726 | INFO     | job summary report
[2025-10-06 16:00:21] 2025-10-06 19:59:44,727 | INFO     | --------------------------------------------------
[2025-10-06 16:00:21] 2025-10-06 19:59:44,727 | INFO     | PanDA job id: 6832634278
[2025-10-06 16:00:21] 2025-10-06 19:59:44,727 | INFO     | task id: 46376905
[2025-10-06 16:00:21] 2025-10-06 19:59:44,727 | INFO     | errors: (none)
[2025-10-06 16:00:21] 2025-10-06 19:59:44,727 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-06 16:00:21] 2025-10-06 19:59:44,727 | INFO     | pilot state: finished 
[2025-10-06 16:00:21] 2025-10-06 19:59:44,727 | INFO     | transexitcode: 0
[2025-10-06 16:00:21] 2025-10-06 19:59:44,727 | INFO     | exeerrorcode: 0
[2025-10-06 16:00:21] 2025-10-06 19:59:44,727 | INFO     | exeerrordiag: 
[2025-10-06 16:00:21] 2025-10-06 19:59:44,727 | INFO     | exitcode: 0
[2025-10-06 16:00:21] 2025-10-06 19:59:44,727 | INFO     | exitmsg: OK
[2025-10-06 16:00:21] 2025-10-06 19:59:44,727 | INFO     | cpuconsumptiontime: 26675 s
[2025-10-06 16:00:21] 2025-10-06 19:59:44,727 | INFO     | nevents: 400
[2025-10-06 16:00:21] 2025-10-06 19:59:44,727 | INFO     | neventsw: 0
[2025-10-06 16:00:21] 2025-10-06 19:59:44,728 | INFO     | pid: 56900
[2025-10-06 16:00:21] 2025-10-06 19:59:44,728 | INFO     | pgrp: 56900
[2025-10-06 16:00:21] 2025-10-06 19:59:44,728 | INFO     | corecount: 11
[2025-10-06 16:00:21] 2025-10-06 19:59:44,728 | INFO     | event service: False
[2025-10-06 16:00:21] 2025-10-06 19:59:44,728 | INFO     | sizes: {0: 2347992, 1: 2348848, 9: 2349110, 12: 2349138, 3842: 2374927, 3843: 2374926, 3844: 2384108, 3846: 2384192, 3855: 2384386}
[2025-10-06 16:00:21] 2025-10-06 19:59:44,728 | INFO     | --------------------------------------------------
[2025-10-06 16:00:21] 2025-10-06 19:59:44,728 | INFO     | 
[2025-10-06 16:00:21] 2025-10-06 19:59:44,728 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-06 16:00:21] 2025-10-06 19:59:44,746 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-06 16:00:21] 2025-10-06 19:59:44,746 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-06 16:00:21] 2025-10-06 19:59:44,746 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-06 16:00:21] 2025-10-06 19:59:44,746 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-06 16:00:21] 2025-10-06 19:59:44,747 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-06 16:00:21] 2025-10-06 19:59:44,747 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-06 16:00:21] 2025-10-06 19:59:44,747 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-06 16:00:21] 2025-10-06 19:59:44,747 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-06 16:00:21] 2025-10-06 19:59:44,747 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-06 16:00:21] 2025-10-06 19:59:44,747 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-06 16:00:21] 2025-10-06 19:59:44,747 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-06 16:00:21] 2025-10-06 19:59:44,747 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-06 16:00:21] 2025-10-06 19:59:44,747 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-06 16:00:21] 2025-10-06 19:59:44,747 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-06 16:00:21] 2025-10-06 19:59:44,747 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-06 16:00:21] 2025-10-06 19:59:44,747 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-06 16:00:21] 2025-10-06 19:59:44,747 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-06 16:00:21] 2025-10-06 19:59:44,748 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-06 16:00:21] 2025-10-06 19:59:44,748 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-06 16:00:21] 2025-10-06 19:59:44,748 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-06 16:00:21] 2025-10-06 19:59:44,748 | INFO     | job 6832634278 has completed (purged errors)
[2025-10-06 16:00:21] 2025-10-06 19:59:44,748 | INFO     | overall cleanup function is called
[2025-10-06 16:00:21] 2025-10-06 19:59:45,755 | INFO     | --- collectZombieJob: --- 10, [56900]
[2025-10-06 16:00:21] 2025-10-06 19:59:45,756 | INFO     | zombie collector waiting for pid 56900
[2025-10-06 16:00:21] 2025-10-06 19:59:45,756 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-06 16:00:21] 2025-10-06 19:59:45,756 | INFO     | collected zombie processes
[2025-10-06 16:00:21] 2025-10-06 19:59:45,756 | INFO     | will attempt to kill all subprocesses of pid=56900
[2025-10-06 16:00:21] 2025-10-06 19:59:46,308 | INFO     | process IDs to be killed: [56900] (in reverse order)
[2025-10-06 16:00:21] 2025-10-06 19:59:46,423 | WARNING  | found no corresponding commands to process id(s)
[2025-10-06 16:00:21] 2025-10-06 19:59:46,424 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-06 16:00:21] 2025-10-06 19:59:46,482 | INFO     | did not find any defunct processes belonging to 56900
[2025-10-06 16:00:21] 2025-10-06 19:59:46,563 | INFO     | did not find any defunct processes belonging to 56900
[2025-10-06 16:00:21] 2025-10-06 19:59:46,563 | INFO     | ready for new job
[2025-10-06 16:00:21] 2025-10-06 19:59:46,563 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-06 16:00:21] 2025-10-06 19:59:46,570 | INFO     | ***************************************
[2025-10-06 16:00:21] 2025-10-06 19:59:46,570 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-06 16:00:21] 2025-10-06 19:59:46,570 | INFO     | ***************************************
[2025-10-06 16:00:21] 2025-10-06 19:59:46,570 | INFO     | 
[2025-10-06 16:00:21] 2025-10-06 19:59:46,594 | INFO     | architecture information:
[2025-10-06 16:00:21] 2025-10-06 19:59:46,601 | INFO     | executing command: cat /etc/os-release
[2025-10-06 16:00:21] 2025-10-06 19:59:46,636 | INFO     | cat /etc/os-release:
[2025-10-06 16:00:21] NAME="CentOS Linux"
[2025-10-06 16:00:21] VERSION="7 (Core)"
[2025-10-06 16:00:21] ID="centos"
[2025-10-06 16:00:21] ID_LIKE="rhel fedora"
[2025-10-06 16:00:21] VERSION_ID="7"
[2025-10-06 16:00:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-06 16:00:21] ANSI_COLOR="0;31"
[2025-10-06 16:00:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-06 16:00:21] HOME_URL="https://www.centos.org/"
[2025-10-06 16:00:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-06 16:00:21] 
[2025-10-06 16:00:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-06 16:00:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-06 16:00:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-06 16:00:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-06 16:00:21] 
[2025-10-06 16:00:21] 2025-10-06 19:59:46,636 | INFO     | ***************************************
[2025-10-06 16:00:21] 2025-10-06 19:59:47,139 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-06 16:00:21] 2025-10-06 19:59:47,161 | INFO     | sufficient remaining disk space (127779471360 B)
[2025-10-06 16:00:21] 2025-10-06 19:59:47,161 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-06 16:00:21] 2025-10-06 19:59:47,161 | INFO     | current server update state: UPDATING_FINAL
[2025-10-06 16:00:21] 2025-10-06 19:59:47,162 | INFO     | update_server=False
[2025-10-06 16:00:21] 2025-10-06 19:59:47,162 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-06 16:00:21] 2025-10-06 19:59:47,162 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-06 16:00:21] 2025-10-06 19:59:47,162 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-06 16:00:21] 2025-10-06 19:59:47,262 | INFO     | all data control threads have been joined
[2025-10-06 16:00:21] 2025-10-06 19:59:47,265 | INFO     | all payload control threads have been joined
[2025-10-06 16:00:21] 2025-10-06 19:59:48,066 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-06 16:00:21] 2025-10-06 19:59:48,068 | INFO     | aborting loop
[2025-10-06 16:00:21] 2025-10-06 19:59:48,185 | INFO     | [job] retrieve thread has finished
[2025-10-06 16:00:21] 2025-10-06 19:59:48,194 | INFO     | all job control threads have been joined
[2025-10-06 16:00:21] 2025-10-06 19:59:48,269 | INFO     | [data] control thread has finished
[2025-10-06 16:00:21] 2025-10-06 19:59:48,270 | INFO     | [payload] control thread has finished
[2025-10-06 16:00:21] 2025-10-06 19:59:48,491 | INFO     | [payload] validate_pre thread has finished
[2025-10-06 16:00:21] 2025-10-06 19:59:48,505 | INFO     | [payload] execute_payloads thread has finished
[2025-10-06 16:00:21] 2025-10-06 19:59:48,928 | INFO     | [payload] failed_post thread has finished
[2025-10-06 16:00:21] 2025-10-06 19:59:49,074 | INFO     | [job] job monitor thread has finished
[2025-10-06 16:00:21] 2025-10-06 19:59:49,100 | INFO     | [job] create_data_payload thread has finished
[2025-10-06 16:00:21] 2025-10-06 19:59:49,118 | INFO     | [data] copytool_in thread has finished
[2025-10-06 16:00:21] 2025-10-06 19:59:49,169 | INFO     | [data] copytool_out thread has finished
[2025-10-06 16:00:21] 2025-10-06 19:59:49,200 | INFO     | [job] control thread has finished
[2025-10-06 16:00:21] 2025-10-06 19:59:49,360 | INFO     | [job] validate thread has finished
[2025-10-06 16:00:21] 2025-10-06 19:59:49,371 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-06 16:00:21] 2025-10-06 19:59:49,740 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-06 16:00:21] 2025-10-06 19:59:49,743 | INFO     | [payload] validate_post thread has finished
[2025-10-06 16:00:21] 2025-10-06 19:59:50,746 | INFO     | [job] queue monitor thread has finished
[2025-10-06 16:00:21] 2025-10-06 19:59:51,170 | INFO     | [data] queue_monitor thread has finished
[2025-10-06 16:00:21] 2025-10-06 20:00:15,460 | INFO     | [monitor] cgroup control has ended
[2025-10-06 16:00:21] 2025-10-06 20:00:15,878 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140298168256320)>', '<ExcThread(monitor, started 140297824614144)>']
[2025-10-06 16:00:21] 2025-10-06 20:00:17,968 | INFO     | PID=50400 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-06 16:00:21] 2025-10-06 20:00:17,968 | INFO     | .. there are 17 such processes running
[2025-10-06 16:00:21] 2025-10-06 20:00:17,969 | INFO     | found 0 job(s) in 20 queues
[2025-10-06 16:00:21] 2025-10-06 20:00:17,970 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-06 16:00:21] 2025-10-06 20:00:17,970 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-06 16:00:21] 2025-10-06 20:00:17,970 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-06 16:00:21] 2025-10-06 20:00:17,970 | INFO     | [monitor] control thread has ended
[2025-10-06 16:00:21] 2025-10-06 20:00:20,904 | INFO     | all workflow threads have been joined
[2025-10-06 16:00:21] 2025-10-06 20:00:20,916 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-06 16:00:21] 2025-10-06 20:00:20,917 | INFO     | traces error code: 0
[2025-10-06 16:00:21] 2025-10-06 20:00:20,917 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-06 16:00:21] 2025-10-06 20:00:21,061 [wrapper] ==== pilot stdout END ====
[2025-10-06 16:00:21] 2025-10-06 20:00:21,063 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-06 16:00:21] 2025-10-06 20:00:21,066 [wrapper] pilotpid: 50400
[2025-10-06 16:00:21] 2025-10-06 20:00:21,069 [wrapper] Pilot exit status: 0
[2025-10-06 16:00:21] 2025-10-06 20:00:21,083 [wrapper] pandaids: 6832634278
[2025-10-06 16:00:21] 2025-10-06 20:00:21,163 [wrapper] cleanup supervisor_pilot  221003 50401
[2025-10-06 16:00:21] 2025-10-06 20:00:21,166 [wrapper] Test setup, not cleaning
[2025-10-06 16:00:21] 2025-10-06 20:00:21,168 [wrapper] apfmon messages muted
[2025-10-06 16:00:21] 2025-10-06 20:00:21,182 [wrapper] ==== wrapper stdout END ====
[2025-10-06 16:00:21] 2025-10-06 20:00:21,185 [wrapper] ==== wrapper stderr END ====
[2025-10-06 16:00:21]  *** Error codes and diagnostics ***
[2025-10-06 16:00:21]     "exeErrorCode": 0,
[2025-10-06 16:00:21]     "exeErrorDiag": "",
[2025-10-06 16:00:21]     "pilotErrorCode": 0,
[2025-10-06 16:00:21]     "pilotErrorDiag": "",
[2025-10-06 16:00:21]  *** Listing of results directory ***
[2025-10-06 16:00:21] total 388772
[2025-10-06 16:00:21] -rw-r--r--. 1 boincer umatlas    552446 Oct  6 06:36 pilot3.tar.gz
[2025-10-06 16:00:21] -rw-r--r--. 1 boincer umatlas      5112 Oct  6 06:45 queuedata.json
[2025-10-06 16:00:21] -rwx------. 1 boincer umatlas     36292 Oct  6 06:46 runpilot2-wrapper.sh
[2025-10-06 16:00:21] -rw-r--r--. 1 boincer umatlas       100 Oct  6 14:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-06 16:00:21] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  6 14:54 run_atlas
[2025-10-06 16:00:21] -rw-r--r--. 1 boincer umatlas       105 Oct  6 14:54 job.xml
[2025-10-06 16:00:21] -rw-r--r--. 2 boincer umatlas 215980892 Oct  6 14:54 EVNT.46376901._004069.pool.root.1
[2025-10-06 16:00:21] -rw-r--r--. 2 boincer umatlas     15120 Oct  6 14:54 start_atlas.sh
[2025-10-06 16:00:21] drwxrwx--x. 2 boincer umatlas      4096 Oct  6 14:54 shared
[2025-10-06 16:00:21] -rw-r--r--. 2 boincer umatlas    565604 Oct  6 14:54 input.tar.gz
[2025-10-06 16:00:21] -rw-r--r--. 1 boincer umatlas         0 Oct  6 14:54 boinc_lockfile
[2025-10-06 16:00:21] -rw-r--r--. 1 boincer umatlas      2521 Oct  6 14:54 pandaJob.out
[2025-10-06 16:00:21] -rw-------. 1 boincer umatlas    975018 Oct  6 14:55 agis_schedconf.cvmfs.json
[2025-10-06 16:00:21] -rw-------. 1 boincer umatlas   1560401 Oct  6 14:55 agis_ddmendpoints.agis.ALL.json
[2025-10-06 16:00:21] drwx------. 4 boincer umatlas      4096 Oct  6 14:55 pilot3
[2025-10-06 16:00:21] -rw-r--r--. 1 boincer umatlas      6945 Oct  6 15:55 init_data.xml
[2025-10-06 16:00:21] -rw-------. 1 boincer umatlas 176390033 Oct  6 15:59 HITS.46376905._109786.pool.root.1
[2025-10-06 16:00:21] -rw-r--r--. 1 boincer umatlas       529 Oct  6 15:59 boinc_task_state.xml
[2025-10-06 16:00:21] -rw-------. 1 boincer umatlas      1033 Oct  6 15:59 memory_monitor_summary.json
[2025-10-06 16:00:21] -rw-------. 1 boincer umatlas    357302 Oct  6 15:59 log.46376905._109786.job.log.tgz.1
[2025-10-06 16:00:21] -rw-------. 1 boincer umatlas      7776 Oct  6 15:59 heartbeat.json
[2025-10-06 16:00:21] -rw-------. 1 boincer umatlas        95 Oct  6 16:00 pilot_heartbeat.json
[2025-10-06 16:00:21] -rw-r--r--. 1 boincer umatlas      8192 Oct  6 16:00 boinc_mmap_file
[2025-10-06 16:00:21] -rw-r--r--. 1 boincer umatlas        27 Oct  6 16:00 wrapper_checkpoint.txt
[2025-10-06 16:00:21] -rw-------. 1 boincer umatlas      4823 Oct  6 16:00 pilotlog.txt
[2025-10-06 16:00:21] -rw-------. 1 boincer umatlas    562103 Oct  6 16:00 log.46376905._109786.job.log.1
[2025-10-06 16:00:21] -rw-------. 1 boincer umatlas       357 Oct  6 16:00 output.list
[2025-10-06 16:00:21] -rw-r--r--. 1 boincer umatlas       620 Oct  6 16:00 runtime_log
[2025-10-06 16:00:21] -rw-------. 1 boincer umatlas    942080 Oct  6 16:00 result.tar.gz
[2025-10-06 16:00:21] -rw-r--r--. 1 boincer umatlas      8700 Oct  6 16:00 runtime_log.err
[2025-10-06 16:00:21] -rw-------. 1 boincer umatlas       651 Oct  6 16:00 GFBLDmquxP8n9Rq4apOajLDm4fhM0noT9bVof3QYDmH2IMDmXMXUQm.diag
[2025-10-06 16:00:21] -rw-r--r--. 1 boincer umatlas     22469 Oct  6 16:00 stderr.txt
[2025-10-06 16:00:21] HITS file was successfully produced:
[2025-10-06 16:00:21] -rw-------. 1 boincer umatlas 176390033 Oct  6 15:59 shared/HITS.pool.root.1
[2025-10-06 16:00:21]  *** Contents of shared directory: ***
[2025-10-06 16:00:21] total 384676
[2025-10-06 16:00:21] -rw-r--r--. 2 boincer umatlas 215980892 Oct  6 14:54 ATLAS.root_0
[2025-10-06 16:00:21] -rw-r--r--. 2 boincer umatlas     15120 Oct  6 14:54 start_atlas.sh
[2025-10-06 16:00:21] -rw-r--r--. 2 boincer umatlas    565604 Oct  6 14:54 input.tar.gz
[2025-10-06 16:00:21] -rw-------. 1 boincer umatlas 176390033 Oct  6 15:59 HITS.pool.root.1
[2025-10-06 16:00:21] -rw-------. 1 boincer umatlas    942080 Oct  6 16:00 result.tar.gz
16:00:22 (46387): run_atlas exited; CPU time 26761.776942
16:00:22 (46387): called boinc_finish(0)

</stderr_txt>
]]>

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