Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:26:19 (4060270): wrapper (7.7.26015): starting
14:26:19 (4060270): wrapper: running run_atlas (--nthreads 8)
[2025-10-06 14:26:19] Arguments: --nthreads 8
[2025-10-06 14:26:19] Threads: 8
[2025-10-06 14:26:19] Checking for CVMFS
[2025-10-06 14:26:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-06 14:26:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-06 14:26:20] Running cvmfs_config stat atlas.cern.ch
[2025-10-06 14:26:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-06 14:26:21] 2.13.2.0 342865 18980 154520 151408 3 668 26578149 40960000 38578 16776704 0 149204678 99.803 75809012 46711 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-06 14:26:21] CVMFS is ok
[2025-10-06 14:26:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-06 14:26:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-06 14:26:21] Further information can be found at the LHC@home message board.
[2025-10-06 14:26:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-06 14:26:21] Checking for apptainer binary...
[2025-10-06 14:26:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-06 14:26:21] Running /usr/bin/apptainer --version
[2025-10-06 14:26:21] apptainer version 1.4.2-1.el9
[2025-10-06 14:26:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-06 14:26:22] c-208-36.aglt2.org
[2025-10-06 14:26:22] apptainer works
[2025-10-06 14:26:22] Set ATHENA_PROC_NUMBER=8
[2025-10-06 14:26:22] Set ATHENA_CORE_NUMBER=8
[2025-10-06 14:26:22] Starting ATLAS job with PandaID=6832421891
[2025-10-06 14:26:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-06 15:49:27]  *** The last 200 lines of the pilot log: ***
[2025-10-06 15:49:27] 2025-10-06 19:48:27,630 | INFO     | time since job start (4878s) is within the limit (172800.0s)
[2025-10-06 15:49:27] 2025-10-06 19:48:30,013 | INFO     | PID=4069142 has CPU usage=10.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-06 15:49:27] 2025-10-06 19:48:30,013 | INFO     | .. there are 38 such processes running
[2025-10-06 15:49:27] 2025-10-06 19:48:30,101 | INFO     | monitor loop #333: job 0:6832421891 is in state 'finished'
[2025-10-06 15:49:27] 2025-10-06 19:48:30,101 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 15:49:27] 2025-10-06 19:48:31,021 | INFO     | time since job start (4882s) is within the limit (172800.0s)
[2025-10-06 15:49:27] 2025-10-06 19:48:32,610 | INFO     | monitor loop #334: job 0:6832421891 is in state 'finished'
[2025-10-06 15:49:27] 2025-10-06 19:48:32,610 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 15:49:27] 2025-10-06 19:48:33,040 | INFO     | time since job start (4884s) is within the limit (172800.0s)
[2025-10-06 15:49:27] 2025-10-06 19:48:35,047 | INFO     | time since job start (4886s) is within the limit (172800.0s)
[2025-10-06 15:49:27] 2025-10-06 19:48:35,115 | INFO     | monitor loop #335: job 0:6832421891 is in state 'finished'
[2025-10-06 15:49:27] 2025-10-06 19:48:35,116 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 15:49:27] 2025-10-06 19:48:37,054 | INFO     | time since job start (4888s) is within the limit (172800.0s)
[2025-10-06 15:49:27] 2025-10-06 19:48:37,620 | INFO     | monitor loop #336: job 0:6832421891 is in state 'finished'
[2025-10-06 15:49:27] 2025-10-06 19:48:37,621 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 15:49:27] 2025-10-06 19:48:39,066 | INFO     | time since job start (4890s) is within the limit (172800.0s)
[2025-10-06 15:49:27] 2025-10-06 19:48:40,125 | INFO     | monitor loop #337: job 0:6832421891 is in state 'finished'
[2025-10-06 15:49:27] 2025-10-06 19:48:40,125 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 15:49:27] 2025-10-06 19:48:41,074 | INFO     | time since job start (4892s) is within the limit (172800.0s)
[2025-10-06 15:49:27] 2025-10-06 19:48:42,630 | INFO     | monitor loop #338: job 0:6832421891 is in state 'finished'
[2025-10-06 15:49:27] 2025-10-06 19:48:42,631 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 15:49:27] 2025-10-06 19:48:43,083 | INFO     | time since job start (4894s) is within the limit (172800.0s)
[2025-10-06 15:49:27] 2025-10-06 19:48:45,096 | INFO     | time since job start (4896s) is within the limit (172800.0s)
[2025-10-06 15:49:27] 2025-10-06 19:48:45,138 | INFO     | monitor loop #339: job 0:6832421891 is in state 'finished'
[2025-10-06 15:49:27] 2025-10-06 19:48:45,139 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 15:49:27] 2025-10-06 19:48:47,103 | INFO     | time since job start (4898s) is within the limit (172800.0s)
[2025-10-06 15:49:27] 2025-10-06 19:48:47,644 | INFO     | monitor loop #340: job 0:6832421891 is in state 'finished'
[2025-10-06 15:49:27] 2025-10-06 19:48:47,645 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 15:49:27] 2025-10-06 19:48:49,112 | INFO     | time since job start (4900s) is within the limit (172800.0s)
[2025-10-06 15:49:27] 2025-10-06 19:48:50,149 | INFO     | monitor loop #341: job 0:6832421891 is in state 'finished'
[2025-10-06 15:49:27] 2025-10-06 19:48:50,150 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 15:49:27] 2025-10-06 19:48:51,120 | INFO     | time since job start (4902s) is within the limit (172800.0s)
[2025-10-06 15:49:27] 2025-10-06 19:48:52,692 | INFO     | monitor loop #342: job 0:6832421891 is in state 'finished'
[2025-10-06 15:49:27] 2025-10-06 19:48:52,693 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 15:49:27] 2025-10-06 19:48:53,508 | INFO     | PID=4069142 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-06 15:49:27] 2025-10-06 19:48:53,509 | INFO     | .. there are 38 such processes running
[2025-10-06 15:49:27] 2025-10-06 19:48:53,815 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-06 15:49:27] 2025-10-06 19:48:53,824 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3798.794046875001
[2025-10-06 15:49:27] 2025-10-06 19:48:53,848 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6832421891/memory_monitor_summary.json (trf name=prmon)
[2025-10-06 15:49:27] 2025-10-06 19:48:53,848 | INFO     | extracted standard info from prmon json
[2025-10-06 15:49:27] 2025-10-06 19:48:53,848 | INFO     | extracted standard memory fields from prmon json
[2025-10-06 15:49:27] 2025-10-06 19:48:53,848 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-06 15:49:27] 2025-10-06 19:48:53,849 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-06 15:49:27] 2025-10-06 19:48:53,849 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-06 15:49:27] 2025-10-06 19:48:53,854 | INFO     | fitting pss+swap vs Time
[2025-10-06 15:49:27] 2025-10-06 19:48:53,854 | INFO     | sum of square deviations: 110961199.94366191
[2025-10-06 15:49:27] 2025-10-06 19:48:53,854 | INFO     | sum of deviations: -682315064.9014083
[2025-10-06 15:49:27] 2025-10-06 19:48:53,854 | INFO     | mean x: 1759777801.028169
[2025-10-06 15:49:27] 2025-10-06 19:48:53,854 | INFO     | mean y: 2509420.4507042253
[2025-10-06 15:49:27] 2025-10-06 19:48:53,854 | INFO     | -- intersect: 10823615402.814207
[2025-10-06 15:49:27] 2025-10-06 19:48:53,854 | INFO     | intersect: 10823615402.814207
[2025-10-06 15:49:27] 2025-10-06 19:48:53,856 | INFO     | chi2: 0.03418536092768812
[2025-10-06 15:49:27] 2025-10-06 19:48:53,856 | INFO     | -- intersect: 10823615402.814207
[2025-10-06 15:49:27] 2025-10-06 19:48:53,856 | INFO     | current memory leak: -6.15 B/s (using 71 data points, chi2=0.03)
[2025-10-06 15:49:27] 2025-10-06 19:48:53,856 | INFO     | could have reported an average CPU frequency of 3799 MHz (6 samples)
[2025-10-06 15:49:27] 2025-10-06 19:48:53,857 | INFO     | ..............................
[2025-10-06 15:49:27] 2025-10-06 19:48:53,857 | INFO     | . Timing measurements:
[2025-10-06 15:49:27] 2025-10-06 19:48:53,857 | INFO     | . get job = 0 s
[2025-10-06 15:49:27] 2025-10-06 19:48:53,857 | INFO     | . initial setup = 4 s
[2025-10-06 15:49:27] 2025-10-06 19:48:53,857 | INFO     | . payload setup = 45 s
[2025-10-06 15:49:27] 2025-10-06 19:48:53,857 | INFO     | . stage-in = 0 s
[2025-10-06 15:49:27] 2025-10-06 19:48:53,857 | INFO     | . payload execution = 4759 s
[2025-10-06 15:49:27] 2025-10-06 19:48:53,857 | INFO     | . stage-out = 1 s
[2025-10-06 15:49:27] 2025-10-06 19:48:53,857 | INFO     | . log creation = 0 s
[2025-10-06 15:49:27] 2025-10-06 19:48:53,857 | INFO     | ..............................
[2025-10-06 15:49:27] 2025-10-06 19:48:53,914 | INFO     | 
[2025-10-06 15:49:27] 2025-10-06 19:48:53,915 | INFO     | job summary report
[2025-10-06 15:49:27] 2025-10-06 19:48:53,915 | INFO     | --------------------------------------------------
[2025-10-06 15:49:27] 2025-10-06 19:48:53,915 | INFO     | PanDA job id: 6832421891
[2025-10-06 15:49:27] 2025-10-06 19:48:53,915 | INFO     | task id: 46376905
[2025-10-06 15:49:27] 2025-10-06 19:48:53,915 | INFO     | errors: (none)
[2025-10-06 15:49:27] 2025-10-06 19:48:53,915 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-06 15:49:27] 2025-10-06 19:48:53,915 | INFO     | pilot state: finished 
[2025-10-06 15:49:27] 2025-10-06 19:48:53,915 | INFO     | transexitcode: 0
[2025-10-06 15:49:27] 2025-10-06 19:48:53,915 | INFO     | exeerrorcode: 0
[2025-10-06 15:49:27] 2025-10-06 19:48:53,915 | INFO     | exeerrordiag: 
[2025-10-06 15:49:27] 2025-10-06 19:48:53,915 | INFO     | exitcode: 0
[2025-10-06 15:49:27] 2025-10-06 19:48:53,915 | INFO     | exitmsg: OK
[2025-10-06 15:49:27] 2025-10-06 19:48:53,915 | INFO     | cpuconsumptiontime: 21394 s
[2025-10-06 15:49:27] 2025-10-06 19:48:53,915 | INFO     | nevents: 400
[2025-10-06 15:49:27] 2025-10-06 19:48:53,915 | INFO     | neventsw: 0
[2025-10-06 15:49:27] 2025-10-06 19:48:53,915 | INFO     | pid: 4078758
[2025-10-06 15:49:27] 2025-10-06 19:48:53,915 | INFO     | pgrp: 4078758
[2025-10-06 15:49:27] 2025-10-06 19:48:53,915 | INFO     | corecount: 8
[2025-10-06 15:49:27] 2025-10-06 19:48:53,915 | INFO     | event service: False
[2025-10-06 15:49:27] 2025-10-06 19:48:53,915 | INFO     | sizes: {0: 2348645, 1: 2348844, 2: 2348844, 12: 2348872, 23: 2348900, 26: 2349190, 34: 2349346, 4809: 2375617, 4810: 2375616, 4812: 2384670, 4814: 2384726, 4846: 2
[2025-10-06 15:49:27] 2025-10-06 19:48:53,915 | INFO     | --------------------------------------------------
[2025-10-06 15:49:27] 2025-10-06 19:48:53,915 | INFO     | 
[2025-10-06 15:49:27] 2025-10-06 19:48:53,915 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-06 15:49:27] 2025-10-06 19:48:53,963 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-06 15:49:27] 2025-10-06 19:48:53,963 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-06 15:49:27] 2025-10-06 19:48:53,963 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-06 15:49:27] 2025-10-06 19:48:53,963 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-06 15:49:27] 2025-10-06 19:48:53,963 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-06 15:49:27] 2025-10-06 19:48:53,963 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-06 15:49:27] 2025-10-06 19:48:53,963 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-06 15:49:27] 2025-10-06 19:48:53,963 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-06 15:49:27] 2025-10-06 19:48:53,963 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-06 15:49:27] 2025-10-06 19:48:53,963 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-06 15:49:27] 2025-10-06 19:48:53,963 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-06 15:49:27] 2025-10-06 19:48:53,963 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-06 15:49:27] 2025-10-06 19:48:53,963 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-06 15:49:27] 2025-10-06 19:48:53,963 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-06 15:49:27] 2025-10-06 19:48:53,964 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-06 15:49:27] 2025-10-06 19:48:53,964 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-06 15:49:27] 2025-10-06 19:48:53,964 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-06 15:49:27] 2025-10-06 19:48:53,964 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-06 15:49:27] 2025-10-06 19:48:53,964 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-06 15:49:27] 2025-10-06 19:48:53,964 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-06 15:49:27] 2025-10-06 19:48:53,964 | INFO     | job 6832421891 has completed (purged errors)
[2025-10-06 15:49:27] 2025-10-06 19:48:53,964 | INFO     | overall cleanup function is called
[2025-10-06 15:49:27] 2025-10-06 19:48:54,975 | INFO     | --- collectZombieJob: --- 10, [4078758]
[2025-10-06 15:49:27] 2025-10-06 19:48:54,976 | INFO     | zombie collector waiting for pid 4078758
[2025-10-06 15:49:27] 2025-10-06 19:48:54,976 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-06 15:49:27] 2025-10-06 19:48:54,976 | INFO     | collected zombie processes
[2025-10-06 15:49:27] 2025-10-06 19:48:54,976 | INFO     | will attempt to kill all subprocesses of pid=4078758
[2025-10-06 15:49:27] 2025-10-06 19:48:55,708 | INFO     | process IDs to be killed: [4078758] (in reverse order)
[2025-10-06 15:49:27] 2025-10-06 19:48:55,863 | WARNING  | found no corresponding commands to process id(s)
[2025-10-06 15:49:27] 2025-10-06 19:48:55,863 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-06 15:49:27] 2025-10-06 19:48:55,915 | INFO     | did not find any defunct processes belonging to 4078758
[2025-10-06 15:49:27] 2025-10-06 19:48:55,945 | INFO     | did not find any defunct processes belonging to 4078758
[2025-10-06 15:49:27] 2025-10-06 19:48:55,945 | INFO     | ready for new job
[2025-10-06 15:49:27] 2025-10-06 19:48:55,945 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-06 15:49:27] 2025-10-06 19:48:55,946 | INFO     | ***************************************
[2025-10-06 15:49:27] 2025-10-06 19:48:55,946 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-06 15:49:27] 2025-10-06 19:48:55,947 | INFO     | ***************************************
[2025-10-06 15:49:27] 2025-10-06 19:48:55,947 | INFO     | 
[2025-10-06 15:49:27] 2025-10-06 19:48:55,951 | INFO     | architecture information:
[2025-10-06 15:49:27] 2025-10-06 19:48:55,951 | INFO     | executing command: cat /etc/os-release
[2025-10-06 15:49:27] 2025-10-06 19:48:55,965 | INFO     | cat /etc/os-release:
[2025-10-06 15:49:27] NAME="CentOS Linux"
[2025-10-06 15:49:27] VERSION="7 (Core)"
[2025-10-06 15:49:27] ID="centos"
[2025-10-06 15:49:27] ID_LIKE="rhel fedora"
[2025-10-06 15:49:27] VERSION_ID="7"
[2025-10-06 15:49:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-06 15:49:27] ANSI_COLOR="0;31"
[2025-10-06 15:49:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-06 15:49:27] HOME_URL="https://www.centos.org/"
[2025-10-06 15:49:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-06 15:49:27] 
[2025-10-06 15:49:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-06 15:49:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-06 15:49:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-06 15:49:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-06 15:49:27] 
[2025-10-06 15:49:27] 2025-10-06 19:48:55,966 | INFO     | ***************************************
[2025-10-06 15:49:27] 2025-10-06 19:48:56,468 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-06 15:49:27] 2025-10-06 19:48:56,485 | INFO     | sufficient remaining disk space (169363898368 B)
[2025-10-06 15:49:27] 2025-10-06 19:48:56,485 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-06 15:49:27] 2025-10-06 19:48:56,485 | INFO     | current server update state: UPDATING_FINAL
[2025-10-06 15:49:27] 2025-10-06 19:48:56,485 | INFO     | update_server=False
[2025-10-06 15:49:27] 2025-10-06 19:48:56,485 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-06 15:49:27] 2025-10-06 19:48:56,486 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-06 15:49:27] 2025-10-06 19:48:56,486 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-06 15:49:27] 2025-10-06 19:48:56,487 | INFO     | aborting loop
[2025-10-06 15:49:27] 2025-10-06 19:48:56,566 | INFO     | all job control threads have been joined
[2025-10-06 15:49:27] 2025-10-06 19:48:57,432 | INFO     | all data control threads have been joined
[2025-10-06 15:49:27] 2025-10-06 19:48:57,492 | INFO     | [job] job monitor thread has finished
[2025-10-06 15:49:27] 2025-10-06 19:48:57,507 | INFO     | [job] retrieve thread has finished
[2025-10-06 15:49:27] 2025-10-06 19:48:57,550 | INFO     | [payload] validate_post thread has finished
[2025-10-06 15:49:27] 2025-10-06 19:48:57,562 | INFO     | all payload control threads have been joined
[2025-10-06 15:49:27] 2025-10-06 19:48:57,571 | INFO     | [job] control thread has finished
[2025-10-06 15:49:27] 2025-10-06 19:48:57,624 | INFO     | [payload] validate_pre thread has finished
[2025-10-06 15:49:27] 2025-10-06 19:48:57,798 | INFO     | [data] copytool_in thread has finished
[2025-10-06 15:49:27] 2025-10-06 19:48:58,179 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-06 15:49:27] 2025-10-06 19:48:58,437 | INFO     | [data] control thread has finished
[2025-10-06 15:49:27] 2025-10-06 19:48:58,496 | INFO     | [data] copytool_out thread has finished
[2025-10-06 15:49:27] 2025-10-06 19:48:58,568 | INFO     | [payload] control thread has finished
[2025-10-06 15:49:27] 2025-10-06 19:48:58,722 | INFO     | [job] create_data_payload thread has finished
[2025-10-06 15:49:27] 2025-10-06 19:48:58,808 | INFO     | [payload] failed_post thread has finished
[2025-10-06 15:49:27] 2025-10-06 19:48:58,930 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-06 15:49:27] 2025-10-06 19:48:58,965 | INFO     | [job] validate thread has finished
[2025-10-06 15:49:27] 2025-10-06 19:48:58,966 | INFO     | [payload] execute_payloads thread has finished
[2025-10-06 15:49:27] 2025-10-06 19:48:59,687 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-06 15:49:27] 2025-10-06 19:48:59,936 | INFO     | [job] queue monitor thread has finished
[2025-10-06 15:49:27] 2025-10-06 19:49:03,700 | INFO     | [data] queue_monitor thread has finished
[2025-10-06 15:49:27] 2025-10-06 19:49:17,556 | INFO     | [monitor] cgroup control has ended
[2025-10-06 15:49:27] 2025-10-06 19:49:19,053 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139967530596160)>', '<ExcThread(monitor, started 139967179241216)>']
[2025-10-06 15:49:27] 2025-10-06 19:49:24,079 | INFO     | all workflow threads have been joined
[2025-10-06 15:49:27] 2025-10-06 19:49:24,082 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-06 15:49:27] 2025-10-06 19:49:24,082 | INFO     | traces error code: 0
[2025-10-06 15:49:27] 2025-10-06 19:49:24,082 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-06 15:49:27] 2025-10-06 19:49:26,337 | INFO     | PID=4069142 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-06 15:49:27] 2025-10-06 19:49:26,337 | INFO     | .. there are 38 such processes running
[2025-10-06 15:49:27] 2025-10-06 19:49:26,338 | INFO     | found 0 job(s) in 20 queues
[2025-10-06 15:49:27] 2025-10-06 19:49:26,338 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-06 15:49:27] 2025-10-06 19:49:26,338 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-06 15:49:27] 2025-10-06 19:49:26,338 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-06 15:49:27] 2025-10-06 19:49:26,338 | INFO     | [monitor] control thread has ended
[2025-10-06 15:49:27] 2025-10-06 19:49:26,785 [wrapper] ==== pilot stdout END ====
[2025-10-06 15:49:27] 2025-10-06 19:49:26,811 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-06 15:49:27] 2025-10-06 19:49:26,832 [wrapper] pilotpid: 4069142
[2025-10-06 15:49:27] 2025-10-06 19:49:26,843 [wrapper] Pilot exit status: 0
[2025-10-06 15:49:27] 2025-10-06 19:49:26,905 [wrapper] pandaids: 6832421891
[2025-10-06 15:49:27] 2025-10-06 19:49:27,211 [wrapper] cleanup supervisor_pilot  459345 4069143
[2025-10-06 15:49:27] 2025-10-06 19:49:27,236 [wrapper] Test setup, not cleaning
[2025-10-06 15:49:27] 2025-10-06 19:49:27,263 [wrapper] apfmon messages muted
[2025-10-06 15:49:27] 2025-10-06 19:49:27,281 [wrapper] ==== wrapper stdout END ====
[2025-10-06 15:49:27] 2025-10-06 19:49:27,295 [wrapper] ==== wrapper stderr END ====
[2025-10-06 15:49:27]  *** Error codes and diagnostics ***
[2025-10-06 15:49:27]     "exeErrorCode": 0,
[2025-10-06 15:49:27]     "exeErrorDiag": "",
[2025-10-06 15:49:27]     "pilotErrorCode": 0,
[2025-10-06 15:49:27]     "pilotErrorDiag": "",
[2025-10-06 15:49:27]  *** Listing of results directory ***
[2025-10-06 15:49:27] total 392608
[2025-10-06 15:49:27] -rw-r--r--. 1 boincer umatlas    552446 Oct  6 01:42 pilot3.tar.gz
[2025-10-06 15:49:27] -rw-r--r--. 1 boincer umatlas      5112 Oct  6 02:05 queuedata.json
[2025-10-06 15:49:27] -rwx------. 1 boincer umatlas     36292 Oct  6 02:06 runpilot2-wrapper.sh
[2025-10-06 15:49:27] -rw-r--r--. 1 boincer umatlas       100 Oct  6 14:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-06 15:49:27] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  6 14:26 run_atlas
[2025-10-06 15:49:27] -rw-r--r--. 1 boincer umatlas       105 Oct  6 14:26 job.xml
[2025-10-06 15:49:27] -rw-r--r--. 2 boincer umatlas 215646572 Oct  6 14:26 EVNT.46376901._003948.pool.root.1
[2025-10-06 15:49:27] -rw-r--r--. 2 boincer umatlas     15120 Oct  6 14:26 start_atlas.sh
[2025-10-06 15:49:27] drwxrwx--x. 2 boincer umatlas      4096 Oct  6 14:26 shared
[2025-10-06 15:49:27] -rw-r--r--. 2 boincer umatlas    565605 Oct  6 14:26 input.tar.gz
[2025-10-06 15:49:27] -rw-r--r--. 1 boincer umatlas         0 Oct  6 14:26 boinc_lockfile
[2025-10-06 15:49:27] -rw-r--r--. 1 boincer umatlas      2519 Oct  6 14:26 pandaJob.out
[2025-10-06 15:49:27] -rw-------. 1 boincer umatlas    975018 Oct  6 14:27 agis_schedconf.cvmfs.json
[2025-10-06 15:49:27] -rw-------. 1 boincer umatlas   1560401 Oct  6 14:27 agis_ddmendpoints.agis.ALL.json
[2025-10-06 15:49:27] drwx------. 4 boincer umatlas      4096 Oct  6 14:27 pilot3
[2025-10-06 15:49:27] -rw-r--r--. 1 boincer umatlas      7173 Oct  6 15:47 init_data.xml
[2025-10-06 15:49:27] -rw-------. 1 boincer umatlas 180493893 Oct  6 15:47 HITS.46376905._106587.pool.root.1
[2025-10-06 15:49:27] -rw-r--r--. 1 boincer umatlas       529 Oct  6 15:47 boinc_task_state.xml
[2025-10-06 15:49:27] -rw-------. 1 boincer umatlas      1054 Oct  6 15:48 memory_monitor_summary.json
[2025-10-06 15:49:27] -rw-------. 1 boincer umatlas    333485 Oct  6 15:48 log.46376905._106587.job.log.tgz.1
[2025-10-06 15:49:27] -rw-------. 1 boincer umatlas        95 Oct  6 15:48 pilot_heartbeat.json
[2025-10-06 15:49:27] -rw-------. 1 boincer umatlas      7832 Oct  6 15:48 heartbeat.json
[2025-10-06 15:49:27] -rw-r--r--. 1 boincer umatlas      8192 Oct  6 15:49 boinc_mmap_file
[2025-10-06 15:49:27] -rw-r--r--. 1 boincer umatlas        27 Oct  6 15:49 wrapper_checkpoint.txt
[2025-10-06 15:49:27] -rw-------. 1 boincer umatlas       823 Oct  6 15:49 pilotlog.txt
[2025-10-06 15:49:27] -rw-------. 1 boincer umatlas    666261 Oct  6 15:49 log.46376905._106587.job.log.1
[2025-10-06 15:49:27] -rw-------. 1 boincer umatlas       357 Oct  6 15:49 output.list
[2025-10-06 15:49:27] -rw-r--r--. 1 boincer umatlas       620 Oct  6 15:49 runtime_log
[2025-10-06 15:49:27] -rw-------. 1 boincer umatlas   1024000 Oct  6 15:49 result.tar.gz
[2025-10-06 15:49:27] -rw-------. 1 boincer umatlas       657 Oct  6 15:49 s1sKDmaXtP8n9Rq4apOajLDm4fhM0noT9bVof3QYDmOfIMDmFFeitm.diag
[2025-10-06 15:49:27] -rw-r--r--. 1 boincer umatlas      8703 Oct  6 15:49 runtime_log.err
[2025-10-06 15:49:27] -rw-r--r--. 1 boincer umatlas     22449 Oct  6 15:49 stderr.txt
[2025-10-06 15:49:28] HITS file was successfully produced:
[2025-10-06 15:49:28] -rw-------. 1 boincer umatlas 180493893 Oct  6 15:47 shared/HITS.pool.root.1
[2025-10-06 15:49:28]  *** Contents of shared directory: ***
[2025-10-06 15:49:28] total 388440
[2025-10-06 15:49:28] -rw-r--r--. 2 boincer umatlas 215646572 Oct  6 14:26 ATLAS.root_0
[2025-10-06 15:49:28] -rw-r--r--. 2 boincer umatlas     15120 Oct  6 14:26 start_atlas.sh
[2025-10-06 15:49:28] -rw-r--r--. 2 boincer umatlas    565605 Oct  6 14:26 input.tar.gz
[2025-10-06 15:49:28] -rw-------. 1 boincer umatlas 180493893 Oct  6 15:47 HITS.pool.root.1
[2025-10-06 15:49:28] -rw-------. 1 boincer umatlas   1024000 Oct  6 15:49 result.tar.gz
15:49:29 (4060270): run_atlas exited; CPU time 21550.469641
15:49:29 (4060270): called boinc_finish(0)

</stderr_txt>
]]>

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