Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
20:13:15 (1558327): wrapper (7.7.26015): starting
20:13:15 (1558327): wrapper: running run_atlas (--nthreads 8)
[2025-10-06 20:13:15] Arguments: --nthreads 8
[2025-10-06 20:13:15] Threads: 8
[2025-10-06 20:13:15] Checking for CVMFS
[2025-10-06 20:13:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-06 20:13:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-06 20:13:16] Running cvmfs_config stat atlas.cern.ch
[2025-10-06 20:13:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-06 20:13:17] 2.13.2.0 756190 2821 49416 151410 3 1 3727820 4096001 0 130560 0 2147855 99.990 98472 586 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-06 20:13:17] CVMFS is ok
[2025-10-06 20:13:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-06 20:13:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-06 20:13:17] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-06 20:13:17] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-06 20:13:17] Further information can be found at the LHC@home message board.
[2025-10-06 20:13:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-06 20:13:17] Checking for apptainer binary...
[2025-10-06 20:13:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-06 20:13:17] Running /usr/bin/apptainer --version
[2025-10-06 20:13:17] apptainer version 1.4.3
[2025-10-06 20:13:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-06 20:13:17] lab01ubuntu
[2025-10-06 20:13:17] apptainer works
[2025-10-06 20:13:17] Set ATHENA_PROC_NUMBER=8
[2025-10-06 20:13:17] Set ATHENA_CORE_NUMBER=8
[2025-10-06 20:13:17] Starting ATLAS job with PandaID=6829510537
[2025-10-06 20:13:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-06 21:50:59]  *** The last 200 lines of the pilot log: ***
[2025-10-06 21:51:00] 2025-10-06 21:50:12,914 | INFO     | size of work directory /var/lib/boinc-client/slots/0/PanDA_Pilot-6829510537: 3329753 B (within 2537553920 B limit)
[2025-10-06 21:51:00] 2025-10-06 21:50:12,914 | INFO     | pfn file=/var/lib/boinc-client/slots/0/PanDA_Pilot-6829510537/HITS.46376905._056007.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-06 21:51:00] 2025-10-06 21:50:12,915 | INFO     | total size of present files: 0 B (workdir size: 3329753 B)
[2025-10-06 21:51:00] 2025-10-06 21:50:12,915 | INFO     | output file size check: skipping output file /var/lib/boinc-client/slots/0/PanDA_Pilot-6829510537/HITS.46376905._056007.pool.root.1 since it does not exist
[2025-10-06 21:51:00] 2025-10-06 21:50:13,085 | INFO     | number of running child processes to parent process 1568464: 1
[2025-10-06 21:51:00] 2025-10-06 21:50:13,086 | INFO     | maximum number of monitored processes: 6
[2025-10-06 21:51:00] 2025-10-06 21:50:13,155 | INFO     | time since job start (5788s) is within the limit (172800.0s)
[2025-10-06 21:51:00] 2025-10-06 21:50:13,643 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-06 21:51:00] 2025-10-06 21:50:15,162 | INFO     | time since job start (5790s) is within the limit (172800.0s)
[2025-10-06 21:51:00] 2025-10-06 21:50:15,590 | INFO     | monitor loop #445: job 0:6829510537 is in state 'finished'
[2025-10-06 21:51:00] 2025-10-06 21:50:15,590 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 21:51:00] 2025-10-06 21:50:15,655 | INFO     | job 6829510537 has state=finished
[2025-10-06 21:51:00] 2025-10-06 21:50:15,656 | INFO     | preparing for final server update for job 6829510537 in state='finished'
[2025-10-06 21:51:00] 2025-10-06 21:50:15,657 | INFO     | this job has now completed (state=finished)
[2025-10-06 21:51:00] 2025-10-06 21:50:15,657 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-06 21:51:00] 2025-10-06 21:50:15,658 | INFO     | log transfer has been attempted: DONE
[2025-10-06 21:51:00] 2025-10-06 21:50:15,658 | INFO     | job 6829510537 has finished - writing final server update
[2025-10-06 21:51:00] 2025-10-06 21:50:15,659 | INFO     | total number of processed events: 400 (read)
[2025-10-06 21:51:00] 2025-10-06 21:50:15,661 | INFO     | executing command: lscpu
[2025-10-06 21:51:00] 2025-10-06 21:50:15,713 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-06 21:51:00] 2025-10-06 21:50:17,169 | INFO     | time since job start (5792s) is within the limit (172800.0s)
[2025-10-06 21:51:00] 2025-10-06 21:50:18,093 | INFO     | monitor loop #446: job 0:6829510537 is in state 'finished'
[2025-10-06 21:51:00] 2025-10-06 21:50:18,094 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 21:51:00] 2025-10-06 21:50:19,177 | INFO     | time since job start (5794s) is within the limit (172800.0s)
[2025-10-06 21:51:00] 2025-10-06 21:50:20,597 | INFO     | monitor loop #447: job 0:6829510537 is in state 'finished'
[2025-10-06 21:51:00] 2025-10-06 21:50:20,598 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 21:51:00] 2025-10-06 21:50:21,183 | INFO     | time since job start (5796s) is within the limit (172800.0s)
[2025-10-06 21:51:00] 2025-10-06 21:50:23,101 | INFO     | monitor loop #448: job 0:6829510537 is in state 'finished'
[2025-10-06 21:51:00] 2025-10-06 21:50:23,102 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 21:51:00] 2025-10-06 21:50:23,192 | INFO     | time since job start (5798s) is within the limit (172800.0s)
[2025-10-06 21:51:00] 2025-10-06 21:50:25,198 | INFO     | time since job start (5800s) is within the limit (172800.0s)
[2025-10-06 21:51:00] 2025-10-06 21:50:25,605 | INFO     | monitor loop #449: job 0:6829510537 is in state 'finished'
[2025-10-06 21:51:00] 2025-10-06 21:50:25,605 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 21:51:00] 2025-10-06 21:50:25,975 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-06 21:51:00] 2025-10-06 21:50:25,978 | INFO     | found 8 cores (8 cores per socket, 1 socket) , CPU MHz: 2893.0279999999993
[2025-10-06 21:51:00] 2025-10-06 21:50:25,981 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6829510537/memory_monitor_summary.json (trf name=prmon)
[2025-10-06 21:51:00] 2025-10-06 21:50:25,983 | INFO     | extracted standard info from prmon json
[2025-10-06 21:51:00] 2025-10-06 21:50:25,983 | INFO     | extracted standard memory fields from prmon json
[2025-10-06 21:51:00] 2025-10-06 21:50:25,984 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-06 21:51:00] 2025-10-06 21:50:25,986 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-06 21:51:00] 2025-10-06 21:50:25,986 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-06 21:51:00] 2025-10-06 21:50:25,991 | INFO     | fitting pss+swap vs Time
[2025-10-06 21:51:00] 2025-10-06 21:50:25,994 | INFO     | sum of square deviations: 204163828.0
[2025-10-06 21:51:00] 2025-10-06 21:50:25,995 | INFO     | sum of deviations: -13224007000.0
[2025-10-06 21:51:00] 2025-10-06 21:50:25,995 | INFO     | mean x: 1759784611.0
[2025-10-06 21:51:00] 2025-10-06 21:50:25,995 | INFO     | mean y: 2756015.436781609
[2025-10-06 21:51:00] 2025-10-06 21:50:25,996 | INFO     | -- intersect: 113986727820.45346
[2025-10-06 21:51:00] 2025-10-06 21:50:25,996 | INFO     | intersect: 113986727820.45346
[2025-10-06 21:51:00] 2025-10-06 21:50:25,996 | INFO     | chi2: 0.5865249526519863
[2025-10-06 21:51:00] 2025-10-06 21:50:25,997 | INFO     | -- intersect: 113986727820.45346
[2025-10-06 21:51:00] 2025-10-06 21:50:25,997 | INFO     | current memory leak: -64.77 B/s (using 87 data points, chi2=0.59)
[2025-10-06 21:51:00] 2025-10-06 21:50:25,998 | INFO     | could have reported an average CPU frequency of 2893 MHz (7 samples)
[2025-10-06 21:51:00] 2025-10-06 21:50:25,999 | INFO     | ..............................
[2025-10-06 21:51:00] 2025-10-06 21:50:25,999 | INFO     | . Timing measurements:
[2025-10-06 21:51:00] 2025-10-06 21:50:25,999 | INFO     | . get job = 0 s
[2025-10-06 21:51:00] 2025-10-06 21:50:25,999 | INFO     | . initial setup = 3 s
[2025-10-06 21:51:00] 2025-10-06 21:50:26,000 | INFO     | . payload setup = 15 s
[2025-10-06 21:51:00] 2025-10-06 21:50:26,000 | INFO     | . stage-in = 0 s
[2025-10-06 21:51:00] 2025-10-06 21:50:26,000 | INFO     | . payload execution = 5733 s
[2025-10-06 21:51:00] 2025-10-06 21:50:26,001 | INFO     | . stage-out = 1 s
[2025-10-06 21:51:00] 2025-10-06 21:50:26,001 | INFO     | . log creation = 0 s
[2025-10-06 21:51:00] 2025-10-06 21:50:26,001 | INFO     | ..............................
[2025-10-06 21:51:00] 2025-10-06 21:50:26,143 | INFO     | 
[2025-10-06 21:51:00] 2025-10-06 21:50:26,144 | INFO     | job summary report
[2025-10-06 21:51:00] 2025-10-06 21:50:26,144 | INFO     | --------------------------------------------------
[2025-10-06 21:51:00] 2025-10-06 21:50:26,144 | INFO     | PanDA job id: 6829510537
[2025-10-06 21:51:00] 2025-10-06 21:50:26,145 | INFO     | task id: 46376905
[2025-10-06 21:51:00] 2025-10-06 21:50:26,145 | INFO     | errors: (none)
[2025-10-06 21:51:00] 2025-10-06 21:50:26,145 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-06 21:51:00] 2025-10-06 21:50:26,146 | INFO     | pilot state: finished 
[2025-10-06 21:51:00] 2025-10-06 21:50:26,146 | INFO     | transexitcode: 0
[2025-10-06 21:51:00] 2025-10-06 21:50:26,146 | INFO     | exeerrorcode: 0
[2025-10-06 21:51:00] 2025-10-06 21:50:26,146 | INFO     | exeerrordiag: 
[2025-10-06 21:51:00] 2025-10-06 21:50:26,147 | INFO     | exitcode: 0
[2025-10-06 21:51:00] 2025-10-06 21:50:26,147 | INFO     | exitmsg: OK
[2025-10-06 21:51:00] 2025-10-06 21:50:26,147 | INFO     | cpuconsumptiontime: 41066 s
[2025-10-06 21:51:00] 2025-10-06 21:50:26,147 | INFO     | nevents: 400
[2025-10-06 21:51:00] 2025-10-06 21:50:26,148 | INFO     | neventsw: 0
[2025-10-06 21:51:00] 2025-10-06 21:50:26,148 | INFO     | pid: 1568464
[2025-10-06 21:51:00] 2025-10-06 21:50:26,148 | INFO     | pgrp: 1568464
[2025-10-06 21:51:00] 2025-10-06 21:50:26,149 | INFO     | corecount: 8
[2025-10-06 21:51:00] 2025-10-06 21:50:26,149 | INFO     | event service: False
[2025-10-06 21:51:00] 2025-10-06 21:50:26,149 | INFO     | sizes: {0: 2348652, 1: 2348851, 12: 2348851, 16: 2349141, 23: 2349169, 5752: 2375914, 5754: 2384926, 5755: 2385010, 5768: 2385204}
[2025-10-06 21:51:00] 2025-10-06 21:50:26,149 | INFO     | --------------------------------------------------
[2025-10-06 21:51:00] 2025-10-06 21:50:26,150 | INFO     | 
[2025-10-06 21:51:00] 2025-10-06 21:50:26,150 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-10-06 21:51:00] 2025-10-06 21:50:26,197 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-06 21:51:00] 2025-10-06 21:50:26,198 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-06 21:51:00] 2025-10-06 21:50:26,198 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-06 21:51:00] 2025-10-06 21:50:26,198 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-06 21:51:00] 2025-10-06 21:50:26,199 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-06 21:51:00] 2025-10-06 21:50:26,199 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-06 21:51:00] 2025-10-06 21:50:26,199 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-06 21:51:00] 2025-10-06 21:50:26,200 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-06 21:51:00] 2025-10-06 21:50:26,200 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-06 21:51:00] 2025-10-06 21:50:26,200 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-06 21:51:00] 2025-10-06 21:50:26,201 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-06 21:51:00] 2025-10-06 21:50:26,201 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-06 21:51:00] 2025-10-06 21:50:26,201 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-06 21:51:00] 2025-10-06 21:50:26,202 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-06 21:51:00] 2025-10-06 21:50:26,202 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-06 21:51:00] 2025-10-06 21:50:26,202 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-06 21:51:00] 2025-10-06 21:50:26,202 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-06 21:51:00] 2025-10-06 21:50:26,203 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-06 21:51:00] 2025-10-06 21:50:26,204 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-06 21:51:00] 2025-10-06 21:50:26,204 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-06 21:51:00] 2025-10-06 21:50:26,204 | INFO     | job 6829510537 has completed (purged errors)
[2025-10-06 21:51:00] 2025-10-06 21:50:26,205 | INFO     | overall cleanup function is called
[2025-10-06 21:51:00] 2025-10-06 21:50:27,217 | INFO     | --- collectZombieJob: --- 10, [1568464]
[2025-10-06 21:51:00] 2025-10-06 21:50:27,217 | INFO     | zombie collector waiting for pid 1568464
[2025-10-06 21:51:00] 2025-10-06 21:50:27,217 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-06 21:51:00] 2025-10-06 21:50:27,218 | INFO     | collected zombie processes
[2025-10-06 21:51:00] 2025-10-06 21:50:27,218 | INFO     | will attempt to kill all subprocesses of pid=1568464
[2025-10-06 21:51:00] 2025-10-06 21:50:27,369 | INFO     | process IDs to be killed: [1568464] (in reverse order)
[2025-10-06 21:51:00] 2025-10-06 21:50:27,446 | WARNING  | found no corresponding commands to process id(s)
[2025-10-06 21:51:00] 2025-10-06 21:50:27,446 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-06 21:51:00] 2025-10-06 21:50:27,448 | INFO     | did not find any defunct processes belonging to 1568464
[2025-10-06 21:51:00] 2025-10-06 21:50:27,450 | INFO     | did not find any defunct processes belonging to 1568464
[2025-10-06 21:51:00] 2025-10-06 21:50:27,450 | INFO     | ready for new job
[2025-10-06 21:51:00] 2025-10-06 21:50:27,450 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-06 21:51:00] 2025-10-06 21:50:27,452 | INFO     | ***************************************
[2025-10-06 21:51:00] 2025-10-06 21:50:27,452 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-06 21:51:00] 2025-10-06 21:50:27,452 | INFO     | ***************************************
[2025-10-06 21:51:00] 2025-10-06 21:50:27,452 | INFO     | 
[2025-10-06 21:51:00] 2025-10-06 21:50:27,453 | INFO     | pilot is running in a VM
[2025-10-06 21:51:00] 2025-10-06 21:50:27,453 | INFO     | architecture information:
[2025-10-06 21:51:00] 2025-10-06 21:50:27,453 | INFO     | executing command: cat /etc/os-release
[2025-10-06 21:51:00] 2025-10-06 21:50:27,476 | INFO     | cat /etc/os-release:
[2025-10-06 21:51:00] NAME="CentOS Linux"
[2025-10-06 21:51:00] VERSION="7 (Core)"
[2025-10-06 21:51:00] ID="centos"
[2025-10-06 21:51:00] ID_LIKE="rhel fedora"
[2025-10-06 21:51:00] VERSION_ID="7"
[2025-10-06 21:51:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-06 21:51:00] ANSI_COLOR="0;31"
[2025-10-06 21:51:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-06 21:51:00] HOME_URL="https://www.centos.org/"
[2025-10-06 21:51:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-06 21:51:00] 
[2025-10-06 21:51:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-06 21:51:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-06 21:51:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-06 21:51:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-06 21:51:00] 
[2025-10-06 21:51:00] 2025-10-06 21:50:27,476 | INFO     | ***************************************
[2025-10-06 21:51:00] 2025-10-06 21:50:27,980 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-10-06 21:51:00] 2025-10-06 21:50:28,014 | INFO     | sufficient remaining disk space (15321792512 B)
[2025-10-06 21:51:00] 2025-10-06 21:50:28,015 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-06 21:51:00] 2025-10-06 21:50:28,015 | INFO     | current server update state: UPDATING_FINAL
[2025-10-06 21:51:00] 2025-10-06 21:50:28,015 | INFO     | update_server=False
[2025-10-06 21:51:00] 2025-10-06 21:50:28,016 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-06 21:51:00] 2025-10-06 21:50:28,017 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-06 21:51:00] 2025-10-06 21:50:28,109 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-06 21:51:00] 2025-10-06 21:50:28,110 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-06 21:51:00] 2025-10-06 21:50:28,110 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-06 21:51:00] 2025-10-06 21:50:28,111 | INFO     | will abort loop
[2025-10-06 21:51:00] 2025-10-06 21:50:28,126 | INFO     | all payload control threads have been joined
[2025-10-06 21:51:00] 2025-10-06 21:50:28,245 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-06 21:51:00] 2025-10-06 21:50:28,714 | INFO     | all job control threads have been joined
[2025-10-06 21:51:00] 2025-10-06 21:50:28,803 | INFO     | all data control threads have been joined
[2025-10-06 21:51:00] 2025-10-06 21:50:28,841 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-06 21:51:00] 2025-10-06 21:50:29,022 | INFO     | [job] retrieve thread has finished
[2025-10-06 21:51:00] 2025-10-06 21:50:29,023 | INFO     | [job] queue monitor thread has finished
[2025-10-06 21:51:00] 2025-10-06 21:50:29,117 | INFO     | [job] job monitor thread has finished
[2025-10-06 21:51:00] 2025-10-06 21:50:29,133 | INFO     | [payload] control thread has finished
[2025-10-06 21:51:00] 2025-10-06 21:50:29,326 | INFO     | [payload] execute_payloads thread has finished
[2025-10-06 21:51:00] 2025-10-06 21:50:29,328 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-06 21:51:00] 2025-10-06 21:50:29,370 | INFO     | [job] validate thread has finished
[2025-10-06 21:51:00] 2025-10-06 21:50:29,630 | INFO     | [payload] validate_post thread has finished
[2025-10-06 21:51:00] 2025-10-06 21:50:29,720 | INFO     | [job] control thread has finished
[2025-10-06 21:51:00] 2025-10-06 21:50:29,809 | INFO     | [data] control thread has finished
[2025-10-06 21:51:00] 2025-10-06 21:50:29,832 | INFO     | [job] create_data_payload thread has finished
[2025-10-06 21:51:00] 2025-10-06 21:50:29,923 | INFO     | [data] copytool_in thread has finished
[2025-10-06 21:51:00] 2025-10-06 21:50:30,178 | INFO     | [payload] validate_pre thread has finished
[2025-10-06 21:51:00] 2025-10-06 21:50:30,251 | INFO     | [data] copytool_out thread has finished
[2025-10-06 21:51:00] 2025-10-06 21:50:30,554 | INFO     | [payload] failed_post thread has finished
[2025-10-06 21:51:00] 2025-10-06 21:50:32,847 | INFO     | [data] queue_monitor thread has finished
[2025-10-06 21:51:00] 2025-10-06 21:50:54,059 | INFO     | [monitor] cgroup control has ended
[2025-10-06 21:51:00] 2025-10-06 21:50:54,451 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 135377743886144)>', '<ExcThread(monitor, started 135377385920256)>']
[2025-10-06 21:51:00] 2025-10-06 21:50:57,215 | INFO     | 5805s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-06 21:51:00] 2025-10-06 21:50:58,396 | INFO     | PID=1562051 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-06 21:51:00] 2025-10-06 21:50:58,396 | INFO     | found 0 job(s) in 20 queues
[2025-10-06 21:51:00] 2025-10-06 21:50:58,396 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-06 21:51:00] 2025-10-06 21:50:58,396 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-06 21:51:00] 2025-10-06 21:50:58,396 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-06 21:51:00] 2025-10-06 21:50:58,397 | INFO     | [monitor] control thread has ended
[2025-10-06 21:51:00] 2025-10-06 21:50:59,477 | INFO     | all workflow threads have been joined
[2025-10-06 21:51:00] 2025-10-06 21:50:59,478 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-06 21:51:00] 2025-10-06 21:50:59,478 | INFO     | traces error code: 0
[2025-10-06 21:51:00] 2025-10-06 21:50:59,479 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-06 21:51:00] 2025-10-06 21:50:59,670 [wrapper] ==== pilot stdout END ====
[2025-10-06 21:51:00] 2025-10-06 21:50:59,680 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-06 21:51:00] 2025-10-06 21:50:59,689 [wrapper] pilotpid: 1562051
[2025-10-06 21:51:00] 2025-10-06 21:50:59,697 [wrapper] Pilot exit status: 0
[2025-10-06 21:51:00] 2025-10-06 21:50:59,734 [wrapper] pandaids: 6829510537
[2025-10-06 21:51:00] 2025-10-06 21:50:59,798 [wrapper] cleanup supervisor_pilot 1580902 1562052
[2025-10-06 21:51:00] 2025-10-06 21:50:59,806 [wrapper] Test setup, not cleaning
[2025-10-06 21:51:00] 2025-10-06 21:50:59,815 [wrapper] apfmon messages muted
[2025-10-06 21:51:00] 2025-10-06 21:50:59,824 [wrapper] ==== wrapper stdout END ====
[2025-10-06 21:51:00] 2025-10-06 21:50:59,832 [wrapper] ==== wrapper stderr END ====
[2025-10-06 21:51:00]  *** Error codes and diagnostics ***
[2025-10-06 21:51:00]     "exeErrorCode": 0,
[2025-10-06 21:51:00]     "exeErrorDiag": "",
[2025-10-06 21:51:00]     "pilotErrorCode": 0,
[2025-10-06 21:51:00]     "pilotErrorDiag": "",
[2025-10-06 21:51:00]  *** Listing of results directory ***
[2025-10-06 21:51:00] total 401188
[2025-10-06 21:51:00] -rw-r--r-- 1 boinc boinc    552446 Oct  4 08:30 pilot3.tar.gz
[2025-10-06 21:51:00] -rwx------ 1 boinc boinc     36292 Oct  4 09:00 runpilot2-wrapper.sh
[2025-10-06 21:51:00] -rw-r--r-- 1 boinc boinc      5112 Oct  4 09:00 queuedata.json
[2025-10-06 21:51:00] -rw-r--r-- 1 boinc boinc       100 Oct  6 20:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-06 21:51:00] -rwxr-xr-x 1 boinc boinc      7986 Oct  6 20:13 run_atlas
[2025-10-06 21:51:00] -rw-r--r-- 1 boinc boinc       105 Oct  6 20:13 job.xml
[2025-10-06 21:51:00] -rw-r--r-- 1 boinc boinc      6315 Oct  6 20:13 init_data.xml
[2025-10-06 21:51:00] -rw-r--r-- 2 boinc boinc 217487172 Oct  6 20:13 EVNT.46376901._002001.pool.root.1
[2025-10-06 21:51:00] -rw-r--r-- 2 boinc boinc     15120 Oct  6 20:13 start_atlas.sh
[2025-10-06 21:51:00] drwxrwx--x 2 boinc boinc      4096 Oct  6 20:13 shared
[2025-10-06 21:51:00] -rw-r--r-- 2 boinc boinc    565596 Oct  6 20:13 input.tar.gz
[2025-10-06 21:51:00] -rw-r--r-- 1 boinc boinc         0 Oct  6 20:13 boinc_lockfile
[2025-10-06 21:51:00] -rw-r--r-- 1 boinc boinc      2519 Oct  6 20:13 pandaJob.out
[2025-10-06 21:51:00] -rw------- 1 boinc boinc    975026 Oct  6 20:13 agis_schedconf.cvmfs.json
[2025-10-06 21:51:00] -rw------- 1 boinc boinc   1560401 Oct  6 20:13 agis_ddmendpoints.agis.ALL.json
[2025-10-06 21:51:00] drwx------ 4 boinc boinc      4096 Oct  6 20:13 pilot3
[2025-10-06 21:51:00] -rw------- 1 boinc boinc 187081296 Oct  6 21:49 HITS.46376905._056007.pool.root.1
[2025-10-06 21:51:00] -rw-r--r-- 1 boinc boinc       529 Oct  6 21:49 boinc_task_state.xml
[2025-10-06 21:51:00] -rw------- 1 boinc boinc      1016 Oct  6 21:50 memory_monitor_summary.json
[2025-10-06 21:51:00] -rw------- 1 boinc boinc    335690 Oct  6 21:50 log.46376905._056007.job.log.tgz.1
[2025-10-06 21:51:00] -rw------- 1 boinc boinc        95 Oct  6 21:50 pilot_heartbeat.json
[2025-10-06 21:51:00] -rw------- 1 boinc boinc      7764 Oct  6 21:50 heartbeat.json
[2025-10-06 21:51:00] -rw-r--r-- 1 boinc boinc        27 Oct  6 21:50 wrapper_checkpoint.txt
[2025-10-06 21:51:00] -rw-r--r-- 1 boinc boinc      8192 Oct  6 21:50 boinc_mmap_file
[2025-10-06 21:51:00] -rw------- 1 boinc boinc      5118 Oct  6 21:50 pilotlog.txt
[2025-10-06 21:51:00] -rw------- 1 boinc boinc    843528 Oct  6 21:50 log.46376905._056007.job.log.1
[2025-10-06 21:51:00] -rw------- 1 boinc boinc       357 Oct  6 21:50 output.list
[2025-10-06 21:51:00] -rw-r--r-- 1 boinc boinc       620 Oct  6 21:50 runtime_log
[2025-10-06 21:51:00] -rw------- 1 boinc boinc   1198080 Oct  6 21:50 result.tar.gz
[2025-10-06 21:51:00] -rw-r--r-- 1 boinc boinc      8775 Oct  6 21:50 runtime_log.err
[2025-10-06 21:51:00] -rw------- 1 boinc boinc       646 Oct  6 21:50 CVwKDmkIDP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmXnKNDmuwPn0m.diag
[2025-10-06 21:51:00] -rw-r--r-- 1 boinc boinc     22567 Oct  6 21:51 stderr.txt
[2025-10-06 21:51:00] HITS file was successfully produced:
[2025-10-06 21:51:00] -rw------- 1 boinc boinc 187081296 Oct  6 21:49 shared/HITS.pool.root.1
[2025-10-06 21:51:00]  *** Contents of shared directory: ***
[2025-10-06 21:51:00] total 396844
[2025-10-06 21:51:00] -rw-r--r-- 2 boinc boinc 217487172 Oct  6 20:13 ATLAS.root_0
[2025-10-06 21:51:00] -rw-r--r-- 2 boinc boinc     15120 Oct  6 20:13 start_atlas.sh
[2025-10-06 21:51:00] -rw-r--r-- 2 boinc boinc    565596 Oct  6 20:13 input.tar.gz
[2025-10-06 21:51:00] -rw------- 1 boinc boinc 187081296 Oct  6 21:49 HITS.pool.root.1
[2025-10-06 21:51:00] -rw------- 1 boinc boinc   1198080 Oct  6 21:50 result.tar.gz
21:51:01 (1558327): run_atlas exited; CPU time 41072.933508
21:51:01 (1558327): called boinc_finish(0)

</stderr_txt>
]]>

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