Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-06 19:58:05 (31144): vboxwrapper version 26210
2025-10-06 19:58:05 (31144): BOINC client version: 8.0.2
2025-10-06 19:58:06 (31144): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-10-06 19:58:06 (31144): Successfully copied 'init_data.xml' to the shared directory.
2025-10-06 19:58:06 (31144): Create VM. (boinc_71e71830842ed25e, slot#3)
2025-10-06 19:58:07 (31144): Setting Memory Size for VM. (4800MB)
2025-10-06 19:58:07 (31144): Setting CPU Count for VM. (8)
2025-10-06 19:58:07 (31144): Setting Chipset Options for VM.
2025-10-06 19:58:08 (31144): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-06 19:58:08 (31144): Setting Boot Options for VM.
2025-10-06 19:58:08 (31144): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-06 19:58:09 (31144): Enabling VM Network Access.
2025-10-06 19:58:09 (31144): Disabling USB Support for VM.
2025-10-06 19:58:09 (31144): Disabling COM Port Support for VM.
2025-10-06 19:58:09 (31144): Disabling LPT Port Support for VM.
2025-10-06 19:58:10 (31144): Disabling Audio Support for VM.
2025-10-06 19:58:10 (31144): Disabling Clipboard Support for VM.
2025-10-06 19:58:10 (31144): Disabling Drag and Drop Support for VM.
2025-10-06 19:58:10 (31144): Adding storage controller(s) to VM.
2025-10-06 19:58:11 (31144): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-06 19:58:13 (31144): Adding VirtualBox Guest Additions to VM.
2025-10-06 19:58:13 (31144): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-06 19:58:14 (31144): forwarding host port 62057 to guest port 80
2025-10-06 19:58:14 (31144): Enabling remote desktop for VM.
2025-10-06 19:58:14 (31144): Required extension pack not installed, remote desktop not enabled.
2025-10-06 19:58:14 (31144): Enabling shared directory for VM.
2025-10-06 19:58:15 (31144): Starting VM using VBoxManage interface. (boinc_71e71830842ed25e, slot#3)
2025-10-06 19:58:24 (31144): Successfully started VM. (PID = '16228')
2025-10-06 19:58:24 (31144): Reporting VM Process ID to BOINC.
2025-10-06 19:58:24 (31144): Guest Log: BIOS: VirtualBox 7.0.6
2025-10-06 19:58:24 (31144): Guest Log: CPUID EDX: 0x178bfbff
2025-10-06 19:58:24 (31144): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-06 19:58:24 (31144): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-06 19:58:24 (31144): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-06 19:58:24 (31144): Detected: Web Application Enabled (http://localhost:62057)
2025-10-06 19:58:24 (31144): Preference change detected
2025-10-06 19:58:24 (31144): Setting CPU throttle for VM. (100%)
2025-10-06 19:58:24 (31144): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-06 19:58:26 (31144): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-06 19:58:26 (31144): Guest Log: BIOS: Booting from Hard Disk...
2025-10-06 19:58:31 (31144): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-06 19:58:31 (31144): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-06 19:58:31 (31144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-06 19:58:31 (31144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-06 19:58:31 (31144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-06 19:58:31 (31144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-06 19:58:31 (31144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-06 19:58:31 (31144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-06 19:58:31 (31144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-06 19:58:31 (31144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-06 19:58:31 (31144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-06 19:58:31 (31144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-06 19:58:31 (31144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-06 19:58:31 (31144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-06 19:58:31 (31144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-06 19:58:31 (31144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-06 19:58:31 (31144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-06 19:58:31 (31144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-06 19:58:31 (31144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-06 19:58:31 (31144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-06 19:58:31 (31144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-06 19:58:31 (31144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-06 19:58:31 (31144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-06 19:58:31 (31144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-06 19:58:31 (31144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-06 19:58:31 (31144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-06 19:58:31 (31144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-06 19:58:31 (31144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-06 19:58:31 (31144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-06 19:58:31 (31144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-06 19:58:31 (31144): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-06 19:58:31 (31144): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-06 19:58:46 (31144): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-06 19:58:46 (31144): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-06 19:59:09 (31144): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-06 19:59:09 (31144): Guest Log: 00:00:00.000588 main     Log opened 2025-10-06T19:59:07.330679000Z
2025-10-06 19:59:09 (31144): Guest Log: 00:00:00.000965 main     OS Product: Linux
2025-10-06 19:59:09 (31144): Guest Log: 00:00:00.001500 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-06 19:59:09 (31144): Guest Log: 00:00:00.001604 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-06 19:59:09 (31144): Guest Log: 00:00:00.001762 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-06 19:59:09 (31144): Guest Log: 00:00:00.001766 main     Process ID: 1392
2025-10-06 19:59:09 (31144): Guest Log: 00:00:00.001769 main     Package type: LINUX_64BITS_GENERIC
2025-10-06 19:59:09 (31144): Guest Log: 00:00:00.003508 main     5.2.32 r132073 started. Verbose level = 0
2025-10-06 19:59:09 (31144): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-06 19:59:09 (31144): Guest Log: [INFO] Mounting shared directory
2025-10-06 19:59:09 (31144): Guest Log: [INFO] Checking for init_data.xml
2025-10-06 19:59:19 (31144): Guest Log: 00:00:10.013375 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 617 288 000ns (GuestNow=1 759 773 558 719 069 000 ns GuestLast=1 759 780 747 336 357 000 ns fSetTimeLastLoop=true )
2025-10-06 20:00:19 (31144): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-06 20:00:19 (31144): Guest Log: [INFO] Detected branch: prod
2025-10-06 20:00:20 (31144): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-06 20:00:20 (31144): Guest Log: Copying input files
2025-10-06 20:00:23 (31144): Guest Log: Copied input files into RunAtlas.
2025-10-06 20:00:23 (31144): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-06 20:00:23 (31144): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-06 20:00:23 (31144): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-06 20:00:23 (31144): Guest Log: Further information can be found at the LHC@home message board.
2025-10-06 20:00:36 (31144): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-06 20:00:38 (31144): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-06 20:00:38 (31144): Guest Log: 2.6.3.0 1689 0 34192 151406 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-06 20:00:42 (31144): Guest Log: copied the webapp to /var/www
2025-10-06 20:00:42 (31144): Guest Log: ATHENA_PROC_NUMBER=8
2025-10-06 20:00:42 (31144): Guest Log: ATHENA_CORE_NUMBER=8
2025-10-06 20:00:48 (31144): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-06 20:00:49 (31144): Guest Log:  *** Starting ATLAS job. (PandaID=6832858570 taskID=46376905) ***
2025-10-06 21:38:30 (31144): Status Report: Elapsed Time: '6000.522772'
2025-10-06 21:38:30 (31144): Status Report: CPU Time: '30212.953125'
2025-10-06 23:18:35 (31144): Status Report: Elapsed Time: '12000.522772'
2025-10-06 23:18:35 (31144): Status Report: CPU Time: '77763.375000'
2025-10-07 00:24:12 (31144): Guest Log:  *** Job finished ***
2025-10-07 00:24:12 (31144): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-07 00:24:12 (31144): Guest Log: 2025-10-06 22:23:35,045 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-07 00:24:12 (31144): Guest Log: 2025-10-06 22:23:35,045 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-07 00:24:12 (31144): Guest Log: 2025-10-06 22:24:02,863 | INFO     | [monitor] cgroup control has ended
2025-10-07 00:24:12 (31144): Guest Log: 2025-10-06 22:24:04,930 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140681269917504)>', '<ExcThread(monitor, started 140680689075968)>']
2025-10-07 00:24:12 (31144): Guest Log: 2025-10-06 22:24:05,440 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-07 00:24:12 (31144): Guest Log: 2025-10-06 22:24:05,440 | INFO     | [monitor] control thread has ended
2025-10-07 00:24:12 (31144): Guest Log: 2025-10-06 22:24:09,937 | INFO     | all workflow threads have been joined
2025-10-07 00:24:12 (31144): Guest Log: 2025-10-06 22:24:09,938 | INFO     | end of generic workflow (traces error code: 0)
2025-10-07 00:24:12 (31144): Guest Log: 2025-10-06 22:24:09,939 | INFO     | traces error code: 0
2025-10-07 00:24:12 (31144): Guest Log: 2025-10-06 22:24:09,940 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-07 00:24:12 (31144): Guest Log: 2025-10-06 22:24:10,203 [wrapper] ==== pilot stdout END ====
2025-10-07 00:24:12 (31144): Guest Log: 2025-10-06 22:24:10,218 [wrapper] ==== wrapper stdout RESUME ====
2025-10-07 00:24:12 (31144): Guest Log: 2025-10-06 22:24:10,233 [wrapper] pilotpid: 6175
2025-10-07 00:24:12 (31144): Guest Log: 2025-10-06 22:24:10,245 [wrapper] Pilot exit status: 0
2025-10-07 00:24:12 (31144): Guest Log: 2025-10-06 22:24:10,401 [wrapper] pandaids: 6832858570
2025-10-07 00:24:12 (31144): Guest Log: 2025-10-06 22:24:10,548 [wrapper] cleanup supervisor_pilot 15962 6176
2025-10-07 00:24:12 (31144): Guest Log: 2025-10-06 22:24:10,564 [wrapper] Test setup, not cleaning
2025-10-07 00:24:12 (31144): Guest Log: 2025-10-06 22:24:10,579 [wrapper] apfmon messages muted
2025-10-07 00:24:12 (31144): Guest Log: 2025-10-06 22:24:10,601 [wrapper] ==== wrapper stdout END ====
2025-10-07 00:24:12 (31144): Guest Log: 2025-10-06 22:24:10,617 [wrapper] ==== wrapper stderr END ====
2025-10-07 00:24:12 (31144): Guest Log:  *** Error codes and diagnostics ***
2025-10-07 00:24:12 (31144): Guest Log:     "exeErrorCode": 0,
2025-10-07 00:24:12 (31144): Guest Log:     "exeErrorDiag": "",
2025-10-07 00:24:12 (31144): Guest Log:     "pilotErrorCode": 0,
2025-10-07 00:24:12 (31144): Guest Log:     "pilotErrorDiag": "",
2025-10-07 00:24:12 (31144): Guest Log:  *** Listing of results directory ***
2025-10-07 00:24:12 (31144): Guest Log: total 177964
2025-10-07 00:24:12 (31144): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct  6 15:39 queuedata.json
2025-10-07 00:24:12 (31144): Guest Log: -rw-r--r--. 1 atlas atlas    552446 Oct  6 15:39 pilot3.tar.gz
2025-10-07 00:24:12 (31144): Guest Log: -rwx------. 1 atlas atlas     36292 Oct  6 15:43 runpilot2-wrapper.sh
2025-10-07 00:24:12 (31144): Guest Log: -rwxr-xr-x. 1 atlas atlas      9074 Oct  6 18:00 init_data.xml
2025-10-07 00:24:12 (31144): Guest Log: -rwxr-xr-x. 1 atlas atlas    565613 Oct  6 18:00 input.tar.gz
2025-10-07 00:24:12 (31144): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct  6 18:00 start_atlas.sh
2025-10-07 00:24:12 (31144): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct  6 18:00 EVNT.46376901._002907.pool.root.1 -> /data/./ATLAS.root_0
2025-10-07 00:24:12 (31144): Guest Log: -rw-r--r--. 1 atlas atlas      2519 Oct  6 18:00 pandaJob.out
2025-10-07 00:24:12 (31144): Guest Log: -rw-------. 1 atlas atlas    975018 Oct  6 18:07 agis_schedconf.cvmfs.json
2025-10-07 00:24:12 (31144): Guest Log: drwx------. 4 atlas atlas      4096 Oct  6 18:08 pilot3
2025-10-07 00:24:12 (31144): Guest Log: -rw-------. 1 atlas atlas 173577765 Oct  6 22:21 HITS.46376905._114233.pool.root.1
2025-10-07 00:24:12 (31144): Guest Log: -rw-------. 1 atlas atlas      1036 Oct  6 22:22 memory_monitor_summary.json
2025-10-07 00:24:12 (31144): Guest Log: -rw-------. 1 atlas atlas   1560401 Oct  6 22:22 agis_ddmendpoints.agis.ALL.json
2025-10-07 00:24:12 (31144): Guest Log: -rw-------. 1 atlas atlas    473566 Oct  6 22:22 log.46376905._114233.job.log.tgz.1
2025-10-07 00:24:12 (31144): Guest Log: -rw-------. 1 atlas atlas        95 Oct  6 22:23 pilot_heartbeat.json
2025-10-07 00:24:12 (31144): Guest Log: -rw-------. 1 atlas atlas      7842 Oct  6 22:23 heartbeat.json
2025-10-07 00:24:12 (31144): Guest Log: -rw-------. 1 atlas atlas      4805 Oct  6 22:24 pilotlog.txt
2025-10-07 00:24:12 (31144): Guest Log: -rw-------. 1 atlas atlas   1949503 Oct  6 22:24 log.46376905._114233.job.log.1
2025-10-07 00:24:12 (31144): Guest Log: -rw-------. 1 atlas atlas       357 Oct  6 22:24 output.list
2025-10-07 00:24:12 (31144): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct  6 22:24 runtime_log
2025-10-07 00:24:12 (31144): Guest Log: -rw-------. 1 atlas atlas   2437120 Oct  6 22:24 result.tar.gz
2025-10-07 00:24:12 (31144): Guest Log: -rw-r--r--. 1 atlas atlas      8649 Oct  6 22:24 runtime_log.err
2025-10-07 00:24:12 (31144): Guest Log: -rw-------. 1 atlas atlas       662 Oct  6 22:24 7iJKDmcY2P8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmIvTNDmXQXZun.diag
2025-10-07 00:24:12 (31144): Guest Log: Looking for outputfile HITS.46376905._114233.pool.root.1
2025-10-07 00:24:12 (31144): Guest Log: HITS file was successfully produced
2025-10-07 00:24:12 (31144): Guest Log: -rw-------. 1 atlas atlas 173577765 Oct  6 22:21 /home/atlas/RunAtlas/HITS.46376905._114233.pool.root.1
2025-10-07 00:24:14 (31144): Guest Log: Successfully finished the ATLAS job!
2025-10-07 00:24:14 (31144): Guest Log: Copying the results back to the shared directory!
2025-10-07 00:24:15 (31144): Guest Log:  *** Contents of shared directory: ***
2025-10-07 00:24:15 (31144): Guest Log: total 382884
2025-10-07 00:24:15 (31144): Guest Log: -rwxrwxrwx. 1 root root 215454927 Oct  6 17:58 ATLAS.root_0
2025-10-07 00:24:15 (31144): Guest Log: -rwxrwxrwx. 1 root root 173577765 Oct  6 22:24 HITS.pool.root.1
2025-10-07 00:24:15 (31144): Guest Log: -rwxrwxrwx. 1 root root      9074 Oct  6 17:58 init_data.xml
2025-10-07 00:24:15 (31144): Guest Log: -rwxrwxrwx. 1 root root    565613 Oct  6 17:57 input.tar.gz
2025-10-07 00:24:15 (31144): Guest Log: -rwxrwxrwx. 1 root root   2437120 Oct  6 22:24 result.tar.gz
2025-10-07 00:24:15 (31144): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct  6 17:57 start_atlas.sh
2025-10-07 00:24:15 (31144): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-07 00:24:15 (31144): VM Completion File Detected.
2025-10-07 00:24:15 (31144): Powering off VM.
2025-10-07 00:24:16 (31144): Successfully stopped VM.
2025-10-07 00:24:16 (31144): Deregistering VM. (boinc_71e71830842ed25e, slot#3)
2025-10-07 00:24:16 (31144): Removing network bandwidth throttle group from VM.
2025-10-07 00:24:17 (31144): Removing VM from VirtualBox.
2025-10-07 00:24:22 (31144): called boinc_finish(0)

</stderr_txt>
]]>

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