Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:32:48 (829481): wrapper (7.7.26015): starting
23:32:48 (829481): wrapper: running run_atlas (--nthreads 3)
[2025-10-06 23:32:48] Arguments: --nthreads 3
[2025-10-06 23:32:48] Threads: 3
[2025-10-06 23:32:48] Checking for CVMFS
[2025-10-06 23:32:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-06 23:32:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-06 23:32:49] Running cvmfs_config stat atlas.cern.ch
[2025-10-06 23:32:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-06 23:32:49] 2.9.2.0 637304 580 58180 151412 0 57 29034099 36864001 0 130560 0 504275 99.989 25306 1148 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-06 23:32:49] CVMFS is ok
[2025-10-06 23:32:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-06 23:32:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-06 23:32:49] Further information can be found at the LHC@home message board.
[2025-10-06 23:32:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-06 23:32:49] Checking for apptainer binary...
[2025-10-06 23:32:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-06 23:32:49] Running /usr/bin/apptainer --version
[2025-10-06 23:32:49] apptainer version 1.4.1-1.1
[2025-10-06 23:32:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-06 23:32:49] magicA252a
[2025-10-06 23:32:49] apptainer works
[2025-10-06 23:32:49] Set ATHENA_PROC_NUMBER=3
[2025-10-06 23:32:49] Set ATHENA_CORE_NUMBER=3
[2025-10-06 23:32:49] Starting ATLAS job with PandaID=6831736527
[2025-10-06 23:32:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-07 00:58:14]  *** The last 200 lines of the pilot log: ***
[2025-10-07 00:58:14] 2025-10-06 22:57:11,405 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-07 00:58:14] 2025-10-06 22:57:11,406 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-07 00:58:14] 2025-10-06 22:57:11,406 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-07 00:58:14] 2025-10-06 22:57:11,406 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-07 00:58:14] 2025-10-06 22:57:11,406 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-07 00:58:14] 2025-10-06 22:57:11,406 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-07 00:58:14] 2025-10-06 22:57:11,406 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-07 00:58:14] 2025-10-06 22:57:11,406 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-07 00:58:14] 2025-10-06 22:57:11,406 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-07 00:58:14] 2025-10-06 22:57:11,406 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-07 00:58:14] 2025-10-06 22:57:11,406 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-07 00:58:14] 2025-10-06 22:57:11,406 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-07 00:58:14] 2025-10-06 22:57:11,406 | INFO     | job 6831736527 has completed (purged errors)
[2025-10-07 00:58:14] 2025-10-06 22:57:11,406 | INFO     | overall cleanup function is called
[2025-10-07 00:58:14] 2025-10-06 22:57:12,411 | INFO     | --- collectZombieJob: --- 10, [839656]
[2025-10-07 00:58:14] 2025-10-06 22:57:12,412 | INFO     | zombie collector waiting for pid 839656
[2025-10-07 00:58:14] 2025-10-06 22:57:12,412 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-07 00:58:14] 2025-10-06 22:57:12,412 | INFO     | collected zombie processes
[2025-10-07 00:58:14] 2025-10-06 22:57:12,412 | INFO     | will attempt to kill all subprocesses of pid=839656
[2025-10-07 00:58:14] 2025-10-06 22:57:12,451 | INFO     | process IDs to be killed: [839656] (in reverse order)
[2025-10-07 00:58:14] 2025-10-06 22:57:12,475 | WARNING  | found no corresponding commands to process id(s)
[2025-10-07 00:58:14] 2025-10-06 22:57:12,475 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-07 00:58:14] 2025-10-06 22:57:12,476 | INFO     | did not find any defunct processes belonging to 839656
[2025-10-07 00:58:14] 2025-10-06 22:57:12,477 | INFO     | did not find any defunct processes belonging to 839656
[2025-10-07 00:58:14] 2025-10-06 22:57:12,477 | INFO     | ready for new job
[2025-10-07 00:58:14] 2025-10-06 22:57:12,477 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-07 00:58:14] 2025-10-06 22:57:12,477 | INFO     | ***************************************
[2025-10-07 00:58:14] 2025-10-06 22:57:12,477 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-07 00:58:14] 2025-10-06 22:57:12,478 | INFO     | ***************************************
[2025-10-07 00:58:14] 2025-10-06 22:57:12,478 | INFO     | 
[2025-10-07 00:58:14] 2025-10-06 22:57:12,478 | INFO     | architecture information:
[2025-10-07 00:58:14] 2025-10-06 22:57:12,478 | INFO     | executing command: cat /etc/os-release
[2025-10-07 00:58:14] 2025-10-06 22:57:12,487 | INFO     | cat /etc/os-release:
[2025-10-07 00:58:14] NAME="CentOS Linux"
[2025-10-07 00:58:14] VERSION="7 (Core)"
[2025-10-07 00:58:14] ID="centos"
[2025-10-07 00:58:14] ID_LIKE="rhel fedora"
[2025-10-07 00:58:14] VERSION_ID="7"
[2025-10-07 00:58:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-07 00:58:14] ANSI_COLOR="0;31"
[2025-10-07 00:58:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-07 00:58:14] HOME_URL="https://www.centos.org/"
[2025-10-07 00:58:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-07 00:58:14] 
[2025-10-07 00:58:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-07 00:58:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-07 00:58:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-07 00:58:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-07 00:58:14] 
[2025-10-07 00:58:14] 2025-10-06 22:57:12,487 | INFO     | ***************************************
[2025-10-07 00:58:14] 2025-10-06 22:57:12,991 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-07 00:58:14] 2025-10-06 22:57:13,003 | INFO     | sufficient remaining disk space (331291295744 B)
[2025-10-07 00:58:14] 2025-10-06 22:57:13,004 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-07 00:58:14] 2025-10-06 22:57:13,004 | INFO     | current server update state: UPDATING_FINAL
[2025-10-07 00:58:14] 2025-10-06 22:57:13,004 | INFO     | update_server=False
[2025-10-07 00:58:14] 2025-10-06 22:57:13,004 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-07 00:58:14] 2025-10-06 22:57:13,004 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-07 00:58:14] 2025-10-06 22:57:13,338 | INFO     | all payload control threads have been joined
[2025-10-07 00:58:14] 2025-10-06 22:57:13,338 | INFO     | all data control threads have been joined
[2025-10-07 00:58:14] 2025-10-06 22:57:13,516 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-07 00:58:14] 2025-10-06 22:57:13,620 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-07 00:58:14] 2025-10-06 22:57:13,620 | INFO     | aborting loop
[2025-10-07 00:58:14] 2025-10-06 22:57:14,010 | INFO     | [job] retrieve thread has finished
[2025-10-07 00:58:14] 2025-10-06 22:57:14,011 | INFO     | [job] queue monitor thread has finished
[2025-10-07 00:58:14] 2025-10-06 22:57:14,026 | INFO     | all job control threads have been joined
[2025-10-07 00:58:14] 2025-10-06 22:57:14,150 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-07 00:58:14] 2025-10-06 22:57:14,250 | INFO     | [payload] failed_post thread has finished
[2025-10-07 00:58:14] 2025-10-06 22:57:14,344 | INFO     | [data] control thread has finished
[2025-10-07 00:58:14] 2025-10-06 22:57:14,345 | INFO     | [payload] control thread has finished
[2025-10-07 00:58:14] 2025-10-06 22:57:14,448 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-07 00:58:14] 2025-10-06 22:57:14,626 | INFO     | [job] job monitor thread has finished
[2025-10-07 00:58:14] 2025-10-06 22:57:14,780 | INFO     | [payload] validate_post thread has finished
[2025-10-07 00:58:14] 2025-10-06 22:57:14,863 | INFO     | [job] validate thread has finished
[2025-10-07 00:58:14] 2025-10-06 22:57:14,976 | INFO     | [data] copytool_in thread has finished
[2025-10-07 00:58:14] 2025-10-06 22:57:15,026 | INFO     | [payload] validate_pre thread has finished
[2025-10-07 00:58:14] 2025-10-06 22:57:15,031 | INFO     | [job] control thread has finished
[2025-10-07 00:58:14] 2025-10-06 22:57:15,053 | INFO     | [job] create_data_payload thread has finished
[2025-10-07 00:58:14] 2025-10-06 22:57:15,147 | INFO     | [payload] execute_payloads thread has finished
[2025-10-07 00:58:14] 2025-10-06 22:57:16,454 | INFO     | [data] copytool_out thread has finished
[2025-10-07 00:58:14] 2025-10-06 22:57:17,523 | INFO     | [data] queue_monitor thread has finished
[2025-10-07 00:58:14] 2025-10-06 22:57:42,598 | INFO     | PID=833204 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-07 00:58:14] 2025-10-06 22:57:42,599 | INFO     | found 0 job(s) in 20 queues
[2025-10-07 00:58:14] 2025-10-06 22:57:42,599 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-07 00:58:14] 2025-10-06 22:57:42,599 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-07 00:58:14] 2025-10-06 22:58:08,538 | INFO     | [monitor] cgroup control has ended
[2025-10-07 00:58:14] 2025-10-06 22:58:09,360 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140466816169792)>', '<ExcThread(monitor, started 140466452403968)>']
[2025-10-07 00:58:14] 2025-10-06 22:58:09,737 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-07 00:58:14] 2025-10-06 22:58:09,737 | INFO     | [monitor] control thread has ended
[2025-10-07 00:58:14] 2025-10-06 22:58:14,386 | INFO     | all workflow threads have been joined
[2025-10-07 00:58:14] 2025-10-06 22:58:14,386 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-07 00:58:14] 2025-10-06 22:58:14,387 | INFO     | traces error code: 0
[2025-10-07 00:58:14] 2025-10-06 22:58:14,387 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-07 00:58:14] 2025-10-06 22:58:14,434 [wrapper] ==== pilot stdout END ====
[2025-10-07 00:58:14] 2025-10-06 22:58:14,437 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-07 00:58:14] 2025-10-06 22:58:14,440 [wrapper] pilotpid: 833204
[2025-10-07 00:58:14] 2025-10-06 22:58:14,443 [wrapper] Pilot exit status: 0
[2025-10-07 00:58:14] 2025-10-06 22:58:14,450 [wrapper] pandaids: 6831736527
[2025-10-07 00:58:14] 2025-10-06 22:58:14,467 [wrapper] cleanup supervisor_pilot  852124 833205
[2025-10-07 00:58:14] 2025-10-06 22:58:14,470 [wrapper] Test setup, not cleaning
[2025-10-07 00:58:14] 2025-10-06 22:58:14,473 [wrapper] apfmon messages muted
[2025-10-07 00:58:14] 2025-10-06 22:58:14,475 [wrapper] ==== wrapper stdout END ====
[2025-10-07 00:58:14] 2025-10-06 22:58:14,477 [wrapper] ==== wrapper stderr END ====
[2025-10-07 00:58:14]  *** Error codes and diagnostics ***
[2025-10-07 00:58:14]     "exeErrorCode": 0,
[2025-10-07 00:58:14]     "exeErrorDiag": "",
[2025-10-07 00:58:14]     "pilotErrorCode": 0,
[2025-10-07 00:58:14]     "pilotErrorDiag": "",
[2025-10-07 00:58:14]  *** Listing of results directory ***
[2025-10-07 00:58:14] total 398220
[2025-10-07 00:58:14] -rw-r--r-- 1 boinc boinc    552446 Oct  5 17:32 pilot3.tar.gz
[2025-10-07 00:58:14] -rwx------ 1 boinc boinc     36292 Oct  5 17:36 runpilot2-wrapper.sh
[2025-10-07 00:58:14] -rw-r--r-- 1 boinc boinc      5112 Oct  5 17:36 queuedata.json
[2025-10-07 00:58:14] -rw-r--r-- 1 boinc boinc       100 Oct  6 23:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-07 00:58:14] -rwxr-xr-x 1 boinc boinc      7986 Oct  6 23:32 run_atlas
[2025-10-07 00:58:14] -rw-r--r-- 1 boinc boinc       105 Oct  6 23:32 job.xml
[2025-10-07 00:58:14] -rw-r--r-- 2 boinc boinc 213847963 Oct  6 23:32 EVNT.46376901._003251.pool.root.1
[2025-10-07 00:58:14] -rw-r--r-- 2 boinc boinc    565600 Oct  6 23:32 input.tar.gz
[2025-10-07 00:58:14] -rw-r--r-- 2 boinc boinc     15120 Oct  6 23:32 start_atlas.sh
[2025-10-07 00:58:14] drwxrwx--x 2 boinc boinc      4096 Oct  6 23:32 shared
[2025-10-07 00:58:14] -rw-r--r-- 1 boinc boinc         0 Oct  6 23:32 boinc_setup_complete
[2025-10-07 00:58:14] -rw-r--r-- 1 boinc boinc      6200 Oct  6 23:32 init_data.xml
[2025-10-07 00:58:14] -rw-r--r-- 1 boinc boinc         0 Oct  6 23:32 boinc_lockfile
[2025-10-07 00:58:14] -rw-r--r-- 1 boinc boinc      2519 Oct  6 23:32 pandaJob.out
[2025-10-07 00:58:14] -rw------- 1 boinc boinc    975020 Oct  6 23:33 agis_schedconf.cvmfs.json
[2025-10-07 00:58:14] -rw------- 1 boinc boinc   1560401 Oct  6 23:33 agis_ddmendpoints.agis.ALL.json
[2025-10-07 00:58:14] drwx------ 4 boinc boinc      4096 Oct  6 23:33 pilot3
[2025-10-07 00:58:14] -rw------- 1 boinc boinc 188091461 Oct  7 00:56 HITS.46376905._088416.pool.root.1
[2025-10-07 00:58:14] -rw-r--r-- 1 boinc boinc       529 Oct  7 00:56 boinc_task_state.xml
[2025-10-07 00:58:14] -rw------- 1 boinc boinc      1034 Oct  7 00:56 memory_monitor_summary.json
[2025-10-07 00:58:14] -rw------- 1 boinc boinc    247331 Oct  7 00:57 log.46376905._088416.job.log.tgz.1
[2025-10-07 00:58:14] -rw------- 1 boinc boinc      7772 Oct  7 00:57 heartbeat.json
[2025-10-07 00:58:14] -rw------- 1 boinc boinc        95 Oct  7 00:57 pilot_heartbeat.json
[2025-10-07 00:58:14] -rw-r--r-- 1 boinc boinc      8192 Oct  7 00:57 boinc_mmap_file
[2025-10-07 00:58:14] -rw-r--r-- 1 boinc boinc        27 Oct  7 00:57 wrapper_checkpoint.txt
[2025-10-07 00:58:14] -rw------- 1 boinc boinc      4751 Oct  7 00:58 pilotlog.txt
[2025-10-07 00:58:14] -rw------- 1 boinc boinc    736223 Oct  7 00:58 log.46376905._088416.job.log.1
[2025-10-07 00:58:14] -rw------- 1 boinc boinc       357 Oct  7 00:58 output.list
[2025-10-07 00:58:14] -rw-r--r-- 1 boinc boinc       620 Oct  7 00:58 runtime_log
[2025-10-07 00:58:14] -rw------- 1 boinc boinc   1003520 Oct  7 00:58 result.tar.gz
[2025-10-07 00:58:14] -rw-r--r-- 1 boinc boinc      8797 Oct  7 00:58 runtime_log.err
[2025-10-07 00:58:14] -rw------- 1 boinc boinc       662 Oct  7 00:58 8LhMDmmxfP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmWvPNDmq69nhn.diag
[2025-10-07 00:58:14] -rw-r--r-- 1 boinc boinc     12025 Oct  7 00:58 stderr.txt
[2025-10-07 00:58:14] HITS file was successfully produced:
[2025-10-07 00:58:14] -rw------- 1 boinc boinc 188091461 Oct  7 00:56 shared/HITS.pool.root.1
[2025-10-07 00:58:14]  *** Contents of shared directory: ***
[2025-10-07 00:58:14] total 394076
[2025-10-07 00:58:14] -rw-r--r-- 2 boinc boinc 213847963 Oct  6 23:32 ATLAS.root_0
[2025-10-07 00:58:14] -rw-r--r-- 2 boinc boinc    565600 Oct  6 23:32 input.tar.gz
[2025-10-07 00:58:14] -rw-r--r-- 2 boinc boinc     15120 Oct  6 23:32 start_atlas.sh
[2025-10-07 00:58:14] -rw------- 1 boinc boinc 188091461 Oct  7 00:56 HITS.pool.root.1
[2025-10-07 00:58:14] -rw------- 1 boinc boinc   1003520 Oct  7 00:58 result.tar.gz
00:58:16 (829481): run_atlas exited; CPU time 14434.176674
00:58:16 (829481): called boinc_finish(0)

</stderr_txt>
]]>

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