Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:43:16 (1541003): wrapper (7.7.26015): starting
19:43:16 (1541003): wrapper: running run_atlas (--nthreads 3)
[2025-10-06 19:43:16] Arguments: --nthreads 3
[2025-10-06 19:43:16] Threads: 3
[2025-10-06 19:43:16] Checking for CVMFS
[2025-10-06 19:43:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-06 19:43:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-06 19:43:16] Running cvmfs_config stat atlas.cern.ch
[2025-10-06 19:43:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-06 19:43:16] 2.9.2.0 1471644 160 56688 151406 0 57 29138723 36864001 0 130560 0 184005 99.988 10274 1330 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-06 19:43:16] CVMFS is ok
[2025-10-06 19:43:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-06 19:43:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-06 19:43:16] Further information can be found at the LHC@home message board.
[2025-10-06 19:43:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-06 19:43:16] Checking for apptainer binary...
[2025-10-06 19:43:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-06 19:43:16] Running /usr/bin/apptainer --version
[2025-10-06 19:43:16] apptainer version 1.4.1-1.1
[2025-10-06 19:43:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-06 19:43:16] atlasA230
[2025-10-06 19:43:16] apptainer works
[2025-10-06 19:43:16] Set ATHENA_PROC_NUMBER=3
[2025-10-06 19:43:16] Set ATHENA_CORE_NUMBER=3
[2025-10-06 19:43:16] Starting ATLAS job with PandaID=6832339026
[2025-10-06 19:43:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-06 20:55:35]  *** The last 200 lines of the pilot log: ***
[2025-10-06 20:55:35] 2025-10-06 18:55:16,757 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-06 20:55:35] 2025-10-06 18:55:16,757 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-06 20:55:35] 2025-10-06 18:55:16,757 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-06 20:55:35] 2025-10-06 18:55:16,757 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-06 20:55:35] 2025-10-06 18:55:16,757 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-06 20:55:35] 2025-10-06 18:55:16,757 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-06 20:55:35] 2025-10-06 18:55:16,757 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-06 20:55:35] 2025-10-06 18:55:16,757 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-06 20:55:35] 2025-10-06 18:55:16,757 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-06 20:55:35] 2025-10-06 18:55:16,757 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-06 20:55:35] 2025-10-06 18:55:16,757 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-06 20:55:35] 2025-10-06 18:55:16,757 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-06 20:55:35] 2025-10-06 18:55:16,757 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-06 20:55:35] 2025-10-06 18:55:16,757 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-06 20:55:35] 2025-10-06 18:55:16,757 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-06 20:55:35] 2025-10-06 18:55:16,757 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-06 20:55:35] 2025-10-06 18:55:16,758 | INFO     | job 6832339026 has completed (purged errors)
[2025-10-06 20:55:35] 2025-10-06 18:55:16,758 | INFO     | overall cleanup function is called
[2025-10-06 20:55:35] 2025-10-06 18:55:17,764 | INFO     | --- collectZombieJob: --- 10, [1551150]
[2025-10-06 20:55:35] 2025-10-06 18:55:17,764 | INFO     | zombie collector waiting for pid 1551150
[2025-10-06 20:55:35] 2025-10-06 18:55:17,764 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-06 20:55:35] 2025-10-06 18:55:17,764 | INFO     | collected zombie processes
[2025-10-06 20:55:35] 2025-10-06 18:55:17,764 | INFO     | will attempt to kill all subprocesses of pid=1551150
[2025-10-06 20:55:35] 2025-10-06 18:55:17,806 | INFO     | process IDs to be killed: [1551150] (in reverse order)
[2025-10-06 20:55:35] 2025-10-06 18:55:17,830 | WARNING  | found no corresponding commands to process id(s)
[2025-10-06 20:55:35] 2025-10-06 18:55:17,830 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-06 20:55:35] 2025-10-06 18:55:17,831 | INFO     | did not find any defunct processes belonging to 1551150
[2025-10-06 20:55:35] 2025-10-06 18:55:17,832 | INFO     | did not find any defunct processes belonging to 1551150
[2025-10-06 20:55:35] 2025-10-06 18:55:17,832 | INFO     | ready for new job
[2025-10-06 20:55:35] 2025-10-06 18:55:17,832 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-06 20:55:35] 2025-10-06 18:55:17,833 | INFO     | ***************************************
[2025-10-06 20:55:35] 2025-10-06 18:55:17,833 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-06 20:55:35] 2025-10-06 18:55:17,833 | INFO     | ***************************************
[2025-10-06 20:55:35] 2025-10-06 18:55:17,833 | INFO     | 
[2025-10-06 20:55:35] 2025-10-06 18:55:17,833 | INFO     | architecture information:
[2025-10-06 20:55:35] 2025-10-06 18:55:17,834 | INFO     | executing command: cat /etc/os-release
[2025-10-06 20:55:35] 2025-10-06 18:55:17,842 | INFO     | cat /etc/os-release:
[2025-10-06 20:55:35] NAME="CentOS Linux"
[2025-10-06 20:55:35] VERSION="7 (Core)"
[2025-10-06 20:55:35] ID="centos"
[2025-10-06 20:55:35] ID_LIKE="rhel fedora"
[2025-10-06 20:55:35] VERSION_ID="7"
[2025-10-06 20:55:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-06 20:55:35] ANSI_COLOR="0;31"
[2025-10-06 20:55:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-06 20:55:35] HOME_URL="https://www.centos.org/"
[2025-10-06 20:55:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-06 20:55:35] 
[2025-10-06 20:55:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-06 20:55:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-06 20:55:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-06 20:55:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-06 20:55:35] 
[2025-10-06 20:55:35] 2025-10-06 18:55:17,842 | INFO     | ***************************************
[2025-10-06 20:55:35] 2025-10-06 18:55:18,345 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-06 20:55:35] 2025-10-06 18:55:18,357 | INFO     | sufficient remaining disk space (331420270592 B)
[2025-10-06 20:55:35] 2025-10-06 18:55:18,358 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-06 20:55:35] 2025-10-06 18:55:18,358 | INFO     | current server update state: UPDATING_FINAL
[2025-10-06 20:55:35] 2025-10-06 18:55:18,358 | INFO     | update_server=False
[2025-10-06 20:55:35] 2025-10-06 18:55:18,358 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-06 20:55:35] 2025-10-06 18:55:18,358 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-06 20:55:35] 2025-10-06 18:55:18,358 | INFO     | found 0 job(s) in 20 queues
[2025-10-06 20:55:35] 2025-10-06 18:55:18,358 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-06 20:55:35] 2025-10-06 18:55:18,358 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-06 20:55:35] 2025-10-06 18:55:18,437 | INFO     | all job control threads have been joined
[2025-10-06 20:55:35] 2025-10-06 18:55:18,652 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-06 20:55:35] 2025-10-06 18:55:18,652 | INFO     | aborting loop
[2025-10-06 20:55:35] 2025-10-06 18:55:19,011 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-06 20:55:35] 2025-10-06 18:55:19,037 | INFO     | all payload control threads have been joined
[2025-10-06 20:55:35] 2025-10-06 18:55:19,238 | INFO     | all data control threads have been joined
[2025-10-06 20:55:35] 2025-10-06 18:55:19,363 | INFO     | [job] retrieve thread has finished
[2025-10-06 20:55:35] 2025-10-06 18:55:19,393 | INFO     | [payload] validate_post thread has finished
[2025-10-06 20:55:35] 2025-10-06 18:55:19,443 | INFO     | [job] control thread has finished
[2025-10-06 20:55:35] 2025-10-06 18:55:19,527 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-06 20:55:35] 2025-10-06 18:55:19,657 | INFO     | [job] job monitor thread has finished
[2025-10-06 20:55:35] 2025-10-06 18:55:20,043 | INFO     | [payload] control thread has finished
[2025-10-06 20:55:35] 2025-10-06 18:55:20,176 | INFO     | [payload] failed_post thread has finished
[2025-10-06 20:55:35] 2025-10-06 18:55:20,244 | INFO     | [data] control thread has finished
[2025-10-06 20:55:35] 2025-10-06 18:55:20,244 | INFO     | [job] validate thread has finished
[2025-10-06 20:55:35] 2025-10-06 18:55:20,244 | INFO     | [data] copytool_in thread has finished
[2025-10-06 20:55:35] 2025-10-06 18:55:20,311 | INFO     | [job] create_data_payload thread has finished
[2025-10-06 20:55:35] 2025-10-06 18:55:20,365 | INFO     | [payload] execute_payloads thread has finished
[2025-10-06 20:55:35] 2025-10-06 18:55:20,371 | INFO     | [payload] validate_pre thread has finished
[2025-10-06 20:55:35] 2025-10-06 18:55:21,017 | INFO     | [data] copytool_out thread has finished
[2025-10-06 20:55:35] 2025-10-06 18:55:21,331 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-06 20:55:35] 2025-10-06 18:55:22,336 | INFO     | [job] queue monitor thread has finished
[2025-10-06 20:55:35] 2025-10-06 18:55:23,533 | INFO     | [data] queue_monitor thread has finished
[2025-10-06 20:55:35] 2025-10-06 18:55:28,311 | INFO     | [monitor] cgroup control has ended
[2025-10-06 20:55:35] 2025-10-06 18:55:29,029 | INFO     | job.realtimelogging is not enabled
[2025-10-06 20:55:35] 2025-10-06 18:55:30,035 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-06 20:55:35] 2025-10-06 18:55:30,074 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140068851746624)>', '<ExcThread(monitor, started 140068110972672)>']
[2025-10-06 20:55:35] 2025-10-06 18:55:30,422 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-06 20:55:35] 2025-10-06 18:55:30,422 | INFO     | [monitor] control thread has ended
[2025-10-06 20:55:35] 2025-10-06 18:55:35,087 | INFO     | all workflow threads have been joined
[2025-10-06 20:55:35] 2025-10-06 18:55:35,087 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-06 20:55:35] 2025-10-06 18:55:35,087 | INFO     | traces error code: 0
[2025-10-06 20:55:35] 2025-10-06 18:55:35,087 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-06 20:55:35] 2025-10-06 18:55:35,138 [wrapper] ==== pilot stdout END ====
[2025-10-06 20:55:35] 2025-10-06 18:55:35,140 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-06 20:55:35] 2025-10-06 18:55:35,143 [wrapper] pilotpid: 1544722
[2025-10-06 20:55:35] 2025-10-06 18:55:35,145 [wrapper] Pilot exit status: 0
[2025-10-06 20:55:35] 2025-10-06 18:55:35,152 [wrapper] pandaids: 6832339026
[2025-10-06 20:55:35] 2025-10-06 18:55:35,167 [wrapper] cleanup supervisor_pilot 1560635 1544723
[2025-10-06 20:55:35] 2025-10-06 18:55:35,170 [wrapper] Test setup, not cleaning
[2025-10-06 20:55:35] 2025-10-06 18:55:35,172 [wrapper] apfmon messages muted
[2025-10-06 20:55:35] 2025-10-06 18:55:35,174 [wrapper] ==== wrapper stdout END ====
[2025-10-06 20:55:35] 2025-10-06 18:55:35,176 [wrapper] ==== wrapper stderr END ====
[2025-10-06 20:55:35]  *** Error codes and diagnostics ***
[2025-10-06 20:55:35]     "exeErrorCode": 0,
[2025-10-06 20:55:35]     "exeErrorDiag": "",
[2025-10-06 20:55:35]     "pilotErrorCode": 0,
[2025-10-06 20:55:35]     "pilotErrorDiag": "",
[2025-10-06 20:55:35]  *** Listing of results directory ***
[2025-10-06 20:55:35] total 384772
[2025-10-06 20:55:35] -rw-r--r-- 1 boinc boinc    552446 Oct  6 06:54 pilot3.tar.gz
[2025-10-06 20:55:35] -rw-r--r-- 1 boinc boinc      5112 Oct  6 07:15 queuedata.json
[2025-10-06 20:55:35] -rwx------ 1 boinc boinc     36292 Oct  6 07:16 runpilot2-wrapper.sh
[2025-10-06 20:55:35] -rw-r--r-- 1 boinc boinc       100 Oct  6 19:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-06 20:55:35] -rwxr-xr-x 1 boinc boinc      7986 Oct  6 19:43 run_atlas
[2025-10-06 20:55:35] -rw-r--r-- 1 boinc boinc       105 Oct  6 19:43 job.xml
[2025-10-06 20:55:35] -rw-r--r-- 2 boinc boinc 214835508 Oct  6 19:43 EVNT.46376901._003929.pool.root.1
[2025-10-06 20:55:35] -rw-r--r-- 2 boinc boinc    565602 Oct  6 19:43 input.tar.gz
[2025-10-06 20:55:35] -rw-r--r-- 2 boinc boinc     15120 Oct  6 19:43 start_atlas.sh
[2025-10-06 20:55:35] drwxrwx--x 2 boinc boinc      4096 Oct  6 19:43 shared
[2025-10-06 20:55:35] -rw-r--r-- 1 boinc boinc         0 Oct  6 19:43 boinc_setup_complete
[2025-10-06 20:55:35] -rw-r--r-- 1 boinc boinc      6442 Oct  6 19:43 init_data.xml
[2025-10-06 20:55:35] -rw-r--r-- 1 boinc boinc         0 Oct  6 19:43 boinc_lockfile
[2025-10-06 20:55:35] -rw-r--r-- 1 boinc boinc      2519 Oct  6 19:43 pandaJob.out
[2025-10-06 20:55:35] -rw------- 1 boinc boinc    975018 Oct  6 19:43 agis_schedconf.cvmfs.json
[2025-10-06 20:55:35] -rw------- 1 boinc boinc   1560401 Oct  6 19:43 agis_ddmendpoints.agis.ALL.json
[2025-10-06 20:55:35] drwx------ 4 boinc boinc      4096 Oct  6 19:43 pilot3
[2025-10-06 20:55:35] -rw------- 1 boinc boinc        95 Oct  6 20:54 pilot_heartbeat.json
[2025-10-06 20:55:35] -rw------- 1 boinc boinc 173530259 Oct  6 20:54 HITS.46376905._106037.pool.root.1
[2025-10-06 20:55:35] -rw-r--r-- 1 boinc boinc       529 Oct  6 20:55 boinc_task_state.xml
[2025-10-06 20:55:35] -rw------- 1 boinc boinc      1021 Oct  6 20:55 memory_monitor_summary.json
[2025-10-06 20:55:35] -rw------- 1 boinc boinc    240547 Oct  6 20:55 log.46376905._106037.job.log.tgz.1
[2025-10-06 20:55:35] -rw------- 1 boinc boinc      7772 Oct  6 20:55 heartbeat.json
[2025-10-06 20:55:35] -rw-r--r-- 1 boinc boinc      8192 Oct  6 20:55 boinc_mmap_file
[2025-10-06 20:55:35] -rw-r--r-- 1 boinc boinc        27 Oct  6 20:55 wrapper_checkpoint.txt
[2025-10-06 20:55:35] -rw------- 1 boinc boinc      4628 Oct  6 20:55 pilotlog.txt
[2025-10-06 20:55:35] -rw------- 1 boinc boinc    637339 Oct  6 20:55 log.46376905._106037.job.log.1
[2025-10-06 20:55:35] -rw------- 1 boinc boinc       357 Oct  6 20:55 output.list
[2025-10-06 20:55:35] -rw-r--r-- 1 boinc boinc       620 Oct  6 20:55 runtime_log
[2025-10-06 20:55:35] -rw------- 1 boinc boinc    901120 Oct  6 20:55 result.tar.gz
[2025-10-06 20:55:35] -rw-r--r-- 1 boinc boinc      8792 Oct  6 20:55 runtime_log.err
[2025-10-06 20:55:35] -rw------- 1 boinc boinc       661 Oct  6 20:55 eQiLDmQlsP8n9Rq4apOajLDm4fhM0noT9bVof3QYDmZaIMDmHoh1Jm.diag
[2025-10-06 20:55:35] -rw-r--r-- 1 boinc boinc     12468 Oct  6 20:55 stderr.txt
[2025-10-06 20:55:35] HITS file was successfully produced:
[2025-10-06 20:55:35] -rw------- 1 boinc boinc 173530259 Oct  6 20:54 shared/HITS.pool.root.1
[2025-10-06 20:55:35]  *** Contents of shared directory: ***
[2025-10-06 20:55:35] total 380728
[2025-10-06 20:55:35] -rw-r--r-- 2 boinc boinc 214835508 Oct  6 19:43 ATLAS.root_0
[2025-10-06 20:55:35] -rw-r--r-- 2 boinc boinc    565602 Oct  6 19:43 input.tar.gz
[2025-10-06 20:55:35] -rw-r--r-- 2 boinc boinc     15120 Oct  6 19:43 start_atlas.sh
[2025-10-06 20:55:35] -rw------- 1 boinc boinc 173530259 Oct  6 20:54 HITS.pool.root.1
[2025-10-06 20:55:35] -rw------- 1 boinc boinc    901120 Oct  6 20:55 result.tar.gz
20:55:37 (1541003): run_atlas exited; CPU time 12300.859011
20:55:37 (1541003): called boinc_finish(0)

</stderr_txt>
]]>

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