Stderr output

<core_client_version>7.24.5</core_client_version>
<![CDATA[
<stderr_txt>
11:10:27 (1387584): wrapper (7.7.26015): starting
11:10:27 (1387584): wrapper: running run_atlas (--nthreads 4)
[2025-10-06 11:10:27] Arguments: --nthreads 4
[2025-10-06 11:10:27] Threads: 4
[2025-10-06 11:10:27] Checking for CVMFS
[2025-10-06 11:10:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-06 11:10:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-06 11:10:28] Running cvmfs_config stat atlas.cern.ch
[2025-10-06 11:10:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-06 11:10:28] 2.12.7.0 1061763 5050 83892 151405 0 188 2248533 4096001 2751 130560 5 15933175 99.998 168910 34 http://cvmfs-egi.gridpp.rl.ac.uk:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-06 11:10:28] CVMFS is ok
[2025-10-06 11:10:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-06 11:10:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-06 11:10:28] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-06 11:10:28] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-06 11:10:28] Further information can be found at the LHC@home message board.
[2025-10-06 11:10:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-06 11:10:28] Checking for apptainer binary...
[2025-10-06 11:10:28] apptainer is not installed, using version from CVMFS
[2025-10-06 11:10:28] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-06 11:10:28] X570UD
[2025-10-06 11:10:28] apptainer works
[2025-10-06 11:10:28] Set ATHENA_PROC_NUMBER=4
[2025-10-06 11:10:28] Set ATHENA_CORE_NUMBER=4
[2025-10-06 11:10:28] Starting ATLAS job with PandaID=6832339873
[2025-10-06 11:10:28] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc3/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-06 12:05:45]  *** The last 200 lines of the pilot log: ***
[2025-10-06 12:05:45]  protocol_id=None
[2025-10-06 12:05:45]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-06 12:05:45]  replicas=None
[2025-10-06 12:05:45]  scope=mc23_13p6TeV
[2025-10-06 12:05:45]  status=None
[2025-10-06 12:05:45]  status_code=0
[2025-10-06 12:05:45]  storage_token=
[2025-10-06 12:05:45]  surl=/var/lib/boinc3/slots/2/PanDA_Pilot-6832339873/log.46376905._106133.job.log.tgz.1
[2025-10-06 12:05:45]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/05/4b/log.46376905._106133.job.log.tgz.1
[2025-10-06 12:05:45]  workdir=None
[2025-10-06 12:05:45] ]
[2025-10-06 12:05:45] 2025-10-06 18:04:35,531 | INFO     | transferring file log.46376905._106133.job.log.tgz.1 from /var/lib/boinc3/slots/2/PanDA_Pilot-6832339873/log.46376905._106133.job.log.tgz.1 to /var/lib/boinc3/slot
[2025-10-06 12:05:45] 2025-10-06 18:04:35,531 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc3/slots/2/PanDA_Pilot-6832339873/log.46376905._106133.job.log.tgz.1 /var/lib/boinc3/slots/2/log.46376905._106133.j
[2025-10-06 12:05:45] 2025-10-06 18:04:35,540 | INFO     | adding to output.list: log.46376905._106133.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/05/4b/log.46376905._106133.job.log.tg
[2025-10-06 12:05:45] 2025-10-06 18:04:35,541 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-06 12:05:45] 2025-10-06 18:04:35,541 | INFO     | summary of transferred files:
[2025-10-06 12:05:45] 2025-10-06 18:04:35,541 | INFO     |  -- lfn=log.46376905._106133.job.log.tgz.1, status_code=0, status=transferred
[2025-10-06 12:05:45] 2025-10-06 18:04:35,541 | INFO     | stage-out finished correctly
[2025-10-06 12:05:45] 2025-10-06 18:04:35,597 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-06 12:05:45] 2025-10-06 18:04:36,779 | INFO     | time since job start (3241s) is within the limit (172800.0s)
[2025-10-06 12:05:45] 2025-10-06 18:04:37,040 | INFO     | monitor loop #248: job 0:6832339873 is in state 'finished'
[2025-10-06 12:05:45] 2025-10-06 18:04:37,040 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 12:05:45] 2025-10-06 18:04:37,342 | INFO     | job 6832339873 has state=finished
[2025-10-06 12:05:45] 2025-10-06 18:04:37,342 | INFO     | preparing for final server update for job 6832339873 in state='finished'
[2025-10-06 12:05:45] 2025-10-06 18:04:37,342 | INFO     | this job has now completed (state=finished)
[2025-10-06 12:05:45] 2025-10-06 18:04:37,342 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-06 12:05:45] 2025-10-06 18:04:37,342 | INFO     | log transfer has been attempted: DONE
[2025-10-06 12:05:45] 2025-10-06 18:04:37,342 | INFO     | job 6832339873 has finished - writing final server update
[2025-10-06 12:05:45] 2025-10-06 18:04:37,343 | INFO     | total number of processed events: 400 (read)
[2025-10-06 12:05:45] 2025-10-06 18:04:37,343 | INFO     | executing command: lscpu
[2025-10-06 12:05:45] 2025-10-06 18:04:37,361 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-06 12:05:45] 2025-10-06 18:04:38,785 | INFO     | time since job start (3243s) is within the limit (172800.0s)
[2025-10-06 12:05:45] 2025-10-06 18:04:39,543 | INFO     | monitor loop #249: job 0:6832339873 is in state 'finished'
[2025-10-06 12:05:45] 2025-10-06 18:04:39,543 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 12:05:45] 2025-10-06 18:04:40,790 | INFO     | time since job start (3245s) is within the limit (172800.0s)
[2025-10-06 12:05:45] 2025-10-06 18:04:41,152 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-06 12:05:45] 2025-10-06 18:04:41,156 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3875.5427812500006
[2025-10-06 12:05:45] 2025-10-06 18:04:41,160 | INFO     | using path: /var/lib/boinc3/slots/2/PanDA_Pilot-6832339873/memory_monitor_summary.json (trf name=prmon)
[2025-10-06 12:05:45] 2025-10-06 18:04:41,160 | INFO     | extracted standard info from prmon json
[2025-10-06 12:05:45] 2025-10-06 18:04:41,160 | INFO     | extracted standard memory fields from prmon json
[2025-10-06 12:05:45] 2025-10-06 18:04:41,160 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-06 12:05:45] 2025-10-06 18:04:41,160 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-06 12:05:45] 2025-10-06 18:04:41,160 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-06 12:05:45] 2025-10-06 18:04:41,161 | INFO     | fitting pss+swap vs Time
[2025-10-06 12:05:45] 2025-10-06 18:04:41,161 | INFO     | sum of square deviations: 30168007.5
[2025-10-06 12:05:45] 2025-10-06 18:04:41,162 | INFO     | sum of deviations: 160079890.5
[2025-10-06 12:05:45] 2025-10-06 18:04:41,162 | INFO     | mean x: 1759772330.5
[2025-10-06 12:05:45] 2025-10-06 18:04:41,162 | INFO     | mean y: 2313673.934782609
[2025-10-06 12:05:45] 2025-10-06 18:04:41,162 | INFO     | -- intersect: -9335530794.957298
[2025-10-06 12:05:45] 2025-10-06 18:04:41,162 | INFO     | intersect: -9335530794.957298
[2025-10-06 12:05:45] 2025-10-06 18:04:41,162 | INFO     | chi2: 9.264616388590195e-05
[2025-10-06 12:05:45] 2025-10-06 18:04:41,162 | INFO     | -- intersect: -9335530794.957298
[2025-10-06 12:05:45] 2025-10-06 18:04:41,162 | INFO     | current memory leak: 5.31 B/s (using 46 data points, chi2=0.00)
[2025-10-06 12:05:45] 2025-10-06 18:04:41,162 | INFO     | could have reported an average CPU frequency of 3943 MHz (5 samples)
[2025-10-06 12:05:45] 2025-10-06 18:04:41,162 | INFO     | ..............................
[2025-10-06 12:05:45] 2025-10-06 18:04:41,162 | INFO     | . Timing measurements:
[2025-10-06 12:05:45] 2025-10-06 18:04:41,163 | INFO     | . get job = 0 s
[2025-10-06 12:05:45] 2025-10-06 18:04:41,163 | INFO     | . initial setup = 2 s
[2025-10-06 12:05:45] 2025-10-06 18:04:41,163 | INFO     | . payload setup = 2 s
[2025-10-06 12:05:45] 2025-10-06 18:04:41,163 | INFO     | . stage-in = 0 s
[2025-10-06 12:05:45] 2025-10-06 18:04:41,163 | INFO     | . payload execution = 3221 s
[2025-10-06 12:05:45] 2025-10-06 18:04:41,163 | INFO     | . stage-out = 0 s
[2025-10-06 12:05:45] 2025-10-06 18:04:41,163 | INFO     | . log creation = 0 s
[2025-10-06 12:05:45] 2025-10-06 18:04:41,163 | INFO     | ..............................
[2025-10-06 12:05:45] 2025-10-06 18:04:41,213 | INFO     | 
[2025-10-06 12:05:45] 2025-10-06 18:04:41,213 | INFO     | job summary report
[2025-10-06 12:05:45] 2025-10-06 18:04:41,213 | INFO     | --------------------------------------------------
[2025-10-06 12:05:45] 2025-10-06 18:04:41,213 | INFO     | PanDA job id: 6832339873
[2025-10-06 12:05:45] 2025-10-06 18:04:41,213 | INFO     | task id: 46376905
[2025-10-06 12:05:45] 2025-10-06 18:04:41,214 | INFO     | errors: (none)
[2025-10-06 12:05:45] 2025-10-06 18:04:41,214 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-06 12:05:45] 2025-10-06 18:04:41,214 | INFO     | pilot state: finished 
[2025-10-06 12:05:45] 2025-10-06 18:04:41,214 | INFO     | transexitcode: 0
[2025-10-06 12:05:45] 2025-10-06 18:04:41,214 | INFO     | exeerrorcode: 0
[2025-10-06 12:05:45] 2025-10-06 18:04:41,214 | INFO     | exeerrordiag: 
[2025-10-06 12:05:45] 2025-10-06 18:04:41,214 | INFO     | exitcode: 0
[2025-10-06 12:05:45] 2025-10-06 18:04:41,214 | INFO     | exitmsg: OK
[2025-10-06 12:05:45] 2025-10-06 18:04:41,214 | INFO     | cpuconsumptiontime: 12348 s
[2025-10-06 12:05:45] 2025-10-06 18:04:41,214 | INFO     | nevents: 400
[2025-10-06 12:05:45] 2025-10-06 18:04:41,214 | INFO     | neventsw: 0
[2025-10-06 12:05:45] 2025-10-06 18:04:41,214 | INFO     | pid: 1398405
[2025-10-06 12:05:45] 2025-10-06 18:04:41,214 | INFO     | pgrp: 1398405
[2025-10-06 12:05:45] 2025-10-06 18:04:41,214 | INFO     | corecount: 4
[2025-10-06 12:05:45] 2025-10-06 18:04:41,214 | INFO     | event service: False
[2025-10-06 12:05:45] 2025-10-06 18:04:41,214 | INFO     | sizes: {0: 2348817, 2: 2349079, 10: 2349107, 3227: 2374634, 3228: 2383690, 3233: 2383860}
[2025-10-06 12:05:45] 2025-10-06 18:04:41,214 | INFO     | --------------------------------------------------
[2025-10-06 12:05:45] 2025-10-06 18:04:41,214 | INFO     | 
[2025-10-06 12:05:45] 2025-10-06 18:04:41,214 | INFO     | executing command: ls -lF /var/lib/boinc3/slots/2
[2025-10-06 12:05:45] 2025-10-06 18:04:41,228 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-06 12:05:45] 2025-10-06 18:04:41,228 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-06 12:05:45] 2025-10-06 18:04:41,228 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-06 12:05:45] 2025-10-06 18:04:41,228 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-06 12:05:45] 2025-10-06 18:04:41,228 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-06 12:05:45] 2025-10-06 18:04:41,228 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-06 12:05:45] 2025-10-06 18:04:41,228 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-06 12:05:45] 2025-10-06 18:04:41,228 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-06 12:05:45] 2025-10-06 18:04:41,228 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-06 12:05:45] 2025-10-06 18:04:41,228 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-06 12:05:45] 2025-10-06 18:04:41,228 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-06 12:05:45] 2025-10-06 18:04:41,228 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-06 12:05:45] 2025-10-06 18:04:41,228 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-06 12:05:45] 2025-10-06 18:04:41,228 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-06 12:05:45] 2025-10-06 18:04:41,228 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-06 12:05:45] 2025-10-06 18:04:41,228 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-06 12:05:45] 2025-10-06 18:04:41,228 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-06 12:05:45] 2025-10-06 18:04:41,228 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-06 12:05:45] 2025-10-06 18:04:41,228 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-06 12:05:45] 2025-10-06 18:04:41,228 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-06 12:05:45] 2025-10-06 18:04:41,228 | INFO     | job 6832339873 has completed (purged errors)
[2025-10-06 12:05:45] 2025-10-06 18:04:41,228 | INFO     | overall cleanup function is called
[2025-10-06 12:05:45] 2025-10-06 18:04:42,232 | INFO     | --- collectZombieJob: --- 10, [1398405]
[2025-10-06 12:05:45] 2025-10-06 18:04:42,232 | INFO     | zombie collector waiting for pid 1398405
[2025-10-06 12:05:45] 2025-10-06 18:04:42,232 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-06 12:05:45] 2025-10-06 18:04:42,232 | INFO     | collected zombie processes
[2025-10-06 12:05:45] 2025-10-06 18:04:42,232 | INFO     | will attempt to kill all subprocesses of pid=1398405
[2025-10-06 12:05:45] 2025-10-06 18:04:42,311 | INFO     | process IDs to be killed: [1398405] (in reverse order)
[2025-10-06 12:05:45] 2025-10-06 18:04:42,344 | WARNING  | found no corresponding commands to process id(s)
[2025-10-06 12:05:45] 2025-10-06 18:04:42,345 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-06 12:05:45] 2025-10-06 18:04:42,347 | INFO     | did not find any defunct processes belonging to 1398405
[2025-10-06 12:05:45] 2025-10-06 18:04:42,348 | INFO     | did not find any defunct processes belonging to 1398405
[2025-10-06 12:05:45] 2025-10-06 18:04:42,348 | INFO     | ready for new job
[2025-10-06 12:05:45] 2025-10-06 18:04:42,349 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-06 12:05:45] 2025-10-06 18:04:42,349 | INFO     | ***************************************
[2025-10-06 12:05:45] 2025-10-06 18:04:42,349 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-06 12:05:45] 2025-10-06 18:04:42,349 | INFO     | ***************************************
[2025-10-06 12:05:45] 2025-10-06 18:04:42,349 | INFO     | 
[2025-10-06 12:05:45] 2025-10-06 18:04:42,350 | INFO     | architecture information:
[2025-10-06 12:05:45] 2025-10-06 18:04:42,350 | INFO     | executing command: cat /etc/os-release
[2025-10-06 12:05:45] 2025-10-06 18:04:42,356 | INFO     | cat /etc/os-release:
[2025-10-06 12:05:45] NAME="CentOS Linux"
[2025-10-06 12:05:45] VERSION="7 (Core)"
[2025-10-06 12:05:45] ID="centos"
[2025-10-06 12:05:45] ID_LIKE="rhel fedora"
[2025-10-06 12:05:45] VERSION_ID="7"
[2025-10-06 12:05:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-06 12:05:45] ANSI_COLOR="0;31"
[2025-10-06 12:05:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-06 12:05:45] HOME_URL="https://www.centos.org/"
[2025-10-06 12:05:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-06 12:05:45] 
[2025-10-06 12:05:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-06 12:05:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-06 12:05:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-06 12:05:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-06 12:05:45] 
[2025-10-06 12:05:45] 2025-10-06 18:04:42,357 | INFO     | ***************************************
[2025-10-06 12:05:45] 2025-10-06 18:04:42,859 | INFO     | executing command: df -mP /var/lib/boinc3/slots/2
[2025-10-06 12:05:45] 2025-10-06 18:04:42,867 | INFO     | sufficient remaining disk space (253918969856 B)
[2025-10-06 12:05:45] 2025-10-06 18:04:42,867 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-06 12:05:45] 2025-10-06 18:04:42,867 | INFO     | current server update state: UPDATING_FINAL
[2025-10-06 12:05:45] 2025-10-06 18:04:42,867 | INFO     | update_server=False
[2025-10-06 12:05:45] 2025-10-06 18:04:42,867 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-06 12:05:45] 2025-10-06 18:04:42,867 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-06 12:05:45] 2025-10-06 18:04:42,994 | INFO     | all data control threads have been joined
[2025-10-06 12:05:45] 2025-10-06 18:04:43,051 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-06 12:05:45] 2025-10-06 18:04:43,051 | INFO     | aborting loop
[2025-10-06 12:05:45] 2025-10-06 18:04:43,167 | INFO     | all payload control threads have been joined
[2025-10-06 12:05:45] 2025-10-06 18:04:43,605 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-06 12:05:45] 2025-10-06 18:04:43,696 | INFO     | all job control threads have been joined
[2025-10-06 12:05:45] 2025-10-06 18:04:43,872 | INFO     | [job] retrieve thread has finished
[2025-10-06 12:05:45] 2025-10-06 18:04:43,873 | INFO     | [job] queue monitor thread has finished
[2025-10-06 12:05:45] 2025-10-06 18:04:43,997 | INFO     | [data] control thread has finished
[2025-10-06 12:05:45] 2025-10-06 18:04:44,052 | INFO     | [job] job monitor thread has finished
[2025-10-06 12:05:45] 2025-10-06 18:04:44,172 | INFO     | [payload] control thread has finished
[2025-10-06 12:05:45] 2025-10-06 18:04:44,265 | INFO     | [payload] validate_post thread has finished
[2025-10-06 12:05:45] 2025-10-06 18:04:44,588 | INFO     | [job] validate thread has finished
[2025-10-06 12:05:45] 2025-10-06 18:04:44,702 | INFO     | [job] control thread has finished
[2025-10-06 12:05:45] 2025-10-06 18:04:44,726 | INFO     | [job] create_data_payload thread has finished
[2025-10-06 12:05:45] 2025-10-06 18:04:44,745 | INFO     | [payload] validate_pre thread has finished
[2025-10-06 12:05:45] 2025-10-06 18:04:44,922 | INFO     | [payload] failed_post thread has finished
[2025-10-06 12:05:45] 2025-10-06 18:04:45,169 | INFO     | [data] copytool_in thread has finished
[2025-10-06 12:05:45] 2025-10-06 18:04:45,237 | INFO     | [payload] execute_payloads thread has finished
[2025-10-06 12:05:45] 2025-10-06 18:04:45,610 | INFO     | [data] copytool_out thread has finished
[2025-10-06 12:05:45] 2025-10-06 18:04:46,159 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-06 12:05:45] 2025-10-06 18:04:50,164 | INFO     | [data] queue_monitor thread has finished
[2025-10-06 12:05:45] 2025-10-06 18:04:53,035 | INFO     | job.realtimelogging is not enabled
[2025-10-06 12:05:45] 2025-10-06 18:04:54,048 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-06 12:05:45] 2025-10-06 18:05:13,961 | INFO     | PID=1391508 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-06 12:05:45] 2025-10-06 18:05:13,961 | INFO     | .. there are 4 such processes running
[2025-10-06 12:05:45] 2025-10-06 18:05:13,962 | INFO     | found 0 job(s) in 20 queues
[2025-10-06 12:05:45] 2025-10-06 18:05:13,962 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-06 12:05:45] 2025-10-06 18:05:13,962 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-06 12:05:45] 2025-10-06 18:05:39,584 | INFO     | [monitor] cgroup control has ended
[2025-10-06 12:05:45] 2025-10-06 18:05:40,704 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 128403884590912)>', '<ExcThread(monitor, started 128403382449920)>']
[2025-10-06 12:05:45] 2025-10-06 18:05:41,089 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-06 12:05:45] 2025-10-06 18:05:41,089 | INFO     | [monitor] control thread has ended
[2025-10-06 12:05:45] 2025-10-06 18:05:45,710 | INFO     | all workflow threads have been joined
[2025-10-06 12:05:45] 2025-10-06 18:05:45,711 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-06 12:05:45] 2025-10-06 18:05:45,711 | INFO     | traces error code: 0
[2025-10-06 12:05:45] 2025-10-06 18:05:45,711 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-06 12:05:45] 2025-10-06 18:05:45,773 [wrapper] ==== pilot stdout END ====
[2025-10-06 12:05:45] 2025-10-06 18:05:45,774 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-06 12:05:45] 2025-10-06 18:05:45,776 [wrapper] pilotpid: 1391508
[2025-10-06 12:05:45] 2025-10-06 18:05:45,777 [wrapper] Pilot exit status: 0
[2025-10-06 12:05:45] 2025-10-06 18:05:45,782 [wrapper] pandaids: 6832339873
[2025-10-06 12:05:45] 2025-10-06 18:05:45,811 [wrapper] cleanup supervisor_pilot 1499318 1391509
[2025-10-06 12:05:45] 2025-10-06 18:05:45,813 [wrapper] Test setup, not cleaning
[2025-10-06 12:05:45] 2025-10-06 18:05:45,814 [wrapper] apfmon messages muted
[2025-10-06 12:05:45] 2025-10-06 18:05:45,816 [wrapper] ==== wrapper stdout END ====
[2025-10-06 12:05:45] 2025-10-06 18:05:45,817 [wrapper] ==== wrapper stderr END ====
[2025-10-06 12:05:45]  *** Error codes and diagnostics ***
[2025-10-06 12:05:45]     "exeErrorCode": 0,
[2025-10-06 12:05:45]     "exeErrorDiag": "",
[2025-10-06 12:05:45]     "pilotErrorCode": 0,
[2025-10-06 12:05:45]     "pilotErrorDiag": "",
[2025-10-06 12:05:45]  *** Listing of results directory ***
[2025-10-06 12:05:45] total 387212
[2025-10-06 12:05:45] -rw-r--r-- 1 boinc boinc    552446 Oct  5 22:54 pilot3.tar.gz
[2025-10-06 12:05:45] -rwx------ 1 boinc boinc     36292 Oct  5 23:23 runpilot2-wrapper.sh
[2025-10-06 12:05:45] -rw-r--r-- 1 boinc boinc      5112 Oct  5 23:23 queuedata.json
[2025-10-06 12:05:45] -rw-rw-r-- 1 boinc boinc       100 Oct  6 11:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-06 12:05:45] -rwxr-xr-x 1 boinc boinc      7986 Oct  6 11:10 run_atlas
[2025-10-06 12:05:45] -rw-rw-r-- 1 boinc boinc       105 Oct  6 11:10 job.xml
[2025-10-06 12:05:45] -rw-r--r-- 2 boinc boinc    565599 Oct  6 11:10 input.tar.gz
[2025-10-06 12:05:45] -rw-rw-r-- 1 boinc boinc      9739 Oct  6 11:10 init_data.xml
[2025-10-06 12:05:45] -rw-r--r-- 2 boinc boinc 217237315 Oct  6 11:10 EVNT.46376901._003933.pool.root.1
[2025-10-06 12:05:45] -rw-r--r-- 2 boinc boinc     15120 Oct  6 11:10 start_atlas.sh
[2025-10-06 12:05:45] drwxrwx--x 2 boinc boinc      4096 Oct  6 11:10 shared
[2025-10-06 12:05:45] -rw-rw-r-- 1 boinc boinc         0 Oct  6 11:10 boinc_lockfile
[2025-10-06 12:05:45] -rw-rw-r-- 1 boinc boinc      2519 Oct  6 11:10 pandaJob.out
[2025-10-06 12:05:45] -rw------- 1 boinc boinc    975002 Oct  6 11:10 agis_schedconf.cvmfs.json
[2025-10-06 12:05:45] -rw------- 1 boinc boinc   1560401 Oct  6 11:10 agis_ddmendpoints.agis.ALL.json
[2025-10-06 12:05:45] drwx------ 4 boinc boinc      4096 Oct  6 11:10 pilot3
[2025-10-06 12:05:45] -rw------- 1 boinc boinc 173897559 Oct  6 12:04 HITS.46376905._106133.pool.root.1
[2025-10-06 12:05:45] -rw-rw-r-- 1 boinc boinc       529 Oct  6 12:04 boinc_task_state.xml
[2025-10-06 12:05:45] -rw------- 1 boinc boinc      1021 Oct  6 12:04 memory_monitor_summary.json
[2025-10-06 12:05:45] -rw------- 1 boinc boinc    239024 Oct  6 12:04 log.46376905._106133.job.log.tgz.1
[2025-10-06 12:05:45] -rw------- 1 boinc boinc      7724 Oct  6 12:04 heartbeat.json
[2025-10-06 12:05:45] -rw------- 1 boinc boinc        95 Oct  6 12:05 pilot_heartbeat.json
[2025-10-06 12:05:45] -rw-rw-r-- 1 boinc boinc      8192 Oct  6 12:05 boinc_mmap_file
[2025-10-06 12:05:45] -rw-rw-r-- 1 boinc boinc        27 Oct  6 12:05 wrapper_checkpoint.txt
[2025-10-06 12:05:45] -rw------- 1 boinc boinc      4897 Oct  6 12:05 pilotlog.txt
[2025-10-06 12:05:45] -rw------- 1 boinc boinc    498991 Oct  6 12:05 log.46376905._106133.job.log.1
[2025-10-06 12:05:45] -rw------- 1 boinc boinc       357 Oct  6 12:05 output.list
[2025-10-06 12:05:45] -rw-rw-r-- 1 boinc boinc       620 Oct  6 12:05 runtime_log
[2025-10-06 12:05:45] -rw------- 1 boinc boinc    757760 Oct  6 12:05 result.tar.gz
[2025-10-06 12:05:45] -rw-rw-r-- 1 boinc boinc      8699 Oct  6 12:05 runtime_log.err
[2025-10-06 12:05:45] -rw------- 1 boinc boinc       650 Oct  6 12:05 le6MDmXssP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm8iSNDm8og76n.diag
[2025-10-06 12:05:45] -rw-rw-r-- 1 boinc boinc     21926 Oct  6 12:05 stderr.txt
[2025-10-06 12:05:45] HITS file was successfully produced:
[2025-10-06 12:05:45] -rw------- 1 boinc boinc 173897559 Oct  6 12:04 shared/HITS.pool.root.1
[2025-10-06 12:05:45]  *** Contents of shared directory: ***
[2025-10-06 12:05:45] total 383292
[2025-10-06 12:05:45] -rw-r--r-- 2 boinc boinc    565599 Oct  6 11:10 input.tar.gz
[2025-10-06 12:05:45] -rw-r--r-- 2 boinc boinc 217237315 Oct  6 11:10 ATLAS.root_0
[2025-10-06 12:05:45] -rw-r--r-- 2 boinc boinc     15120 Oct  6 11:10 start_atlas.sh
[2025-10-06 12:05:45] -rw------- 1 boinc boinc 173897559 Oct  6 12:04 HITS.pool.root.1
[2025-10-06 12:05:45] -rw------- 1 boinc boinc    757760 Oct  6 12:05 result.tar.gz
12:05:47 (1387584): run_atlas exited; CPU time 12376.561725
12:05:47 (1387584): called boinc_finish(0)

</stderr_txt>
]]>

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