Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:00:09 (1481883): wrapper (7.7.26015): starting
09:00:09 (1481883): wrapper: running run_atlas (--nthreads 12)
[2025-10-06 09:00:09] Arguments: --nthreads 12
[2025-10-06 09:00:09] Threads: 12
[2025-10-06 09:00:09] Checking for CVMFS
[2025-10-06 09:00:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-06 09:00:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-06 09:00:10] Running cvmfs_config stat atlas.cern.ch
[2025-10-06 09:00:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-06 09:00:11] 2.11.5.0 2828 23027 233444 151403 3 509 32423757 45568000 24240 130560 0 233351380 99.871 96732126 15016 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-10-06 09:00:11] CVMFS is ok
[2025-10-06 09:00:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-06 09:00:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-06 09:00:11] Further information can be found at the LHC@home message board.
[2025-10-06 09:00:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-06 09:00:11] Checking for apptainer binary...
[2025-10-06 09:00:11] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-06 09:00:11] Running /usr/bin/apptainer --version
[2025-10-06 09:00:11] apptainer version 1.4.1-1.el9
[2025-10-06 09:00:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-06 09:00:12] wns0081.triumf.lcg
[2025-10-06 09:00:12] apptainer works
[2025-10-06 09:00:12] Set ATHENA_PROC_NUMBER=12
[2025-10-06 09:00:12] Set ATHENA_CORE_NUMBER=12
[2025-10-06 09:00:12] Starting ATLAS job with PandaID=6832634273
[2025-10-06 09:00:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-06 09:04:48]  *** The last 200 lines of the pilot log: ***
[2025-10-06 09:04:48] 2025-10-06 16:04:12,391 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-06 09:04:48] 2025-10-06 16:04:12,392 | WARNING  | wrong length of table data, x=[1759766499.0], y=[1105.0] (must be same and length>=4)
[2025-10-06 09:04:48] 2025-10-06 16:04:12,392 | INFO     | could have reported an average CPU frequency of 2755 MHz (4 samples)
[2025-10-06 09:04:48] 2025-10-06 16:04:12,392 | INFO     | ..............................
[2025-10-06 09:04:48] 2025-10-06 16:04:12,392 | INFO     | . Timing measurements:
[2025-10-06 09:04:48] 2025-10-06 16:04:12,392 | INFO     | . get job = 0 s
[2025-10-06 09:04:48] 2025-10-06 16:04:12,392 | INFO     | . initial setup = 3 s
[2025-10-06 09:04:48] 2025-10-06 16:04:12,392 | INFO     | . payload setup = 15 s
[2025-10-06 09:04:48] 2025-10-06 16:04:12,392 | INFO     | . stage-in = 0 s
[2025-10-06 09:04:48] 2025-10-06 16:04:12,392 | INFO     | . payload execution = 29 s
[2025-10-06 09:04:48] 2025-10-06 16:04:12,392 | INFO     | . stage-out = 1 s
[2025-10-06 09:04:48] 2025-10-06 16:04:12,392 | INFO     | . log creation = 0 s
[2025-10-06 09:04:48] 2025-10-06 16:04:12,392 | INFO     | ..............................
[2025-10-06 09:04:48] 2025-10-06 16:04:12,393 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-06 09:04:48] 2025-10-06 16:04:12,393 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6832634273/pilotlog.txt
[2025-10-06 09:04:48] 2025-10-06 16:04:12,457 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-06 09:04:48] - Log from pilotlog.txt -
[2025-10-06 09:04:48] 2025-10-06 16:04:12,390 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6832634273/memory_monitor_summary.json (trf name=prmon)
[2025-10-06 09:04:48] 2025-10-06 16:04:12,391 | INFO     | extracted standard info from prmon json
[2025-10-06 09:04:48] 2025-10-06 16:04:12,391 | INFO     | extracted standard memory fields from prmon json
[2025-10-06 09:04:48] 2025-10-06 16:04:12,391 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-06 09:04:48] 2025-10-06 16:04:12,391 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-06 09:04:48] 2025-10-06 16:04:12,391 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-06 09:04:48] 2025-10-06 16:04:12,392 | WARNING  | wrong length of table data, x=[1759766499.0], y=[1105.0] (must be same and length>=4)
[2025-10-06 09:04:48] 2025-10-06 16:04:12,392 | INFO     | could have reported an average CPU frequency of 2755 MHz (4 samples)
[2025-10-06 09:04:48] 2025-10-06 16:04:12,392 | INFO     | ..............................
[2025-10-06 09:04:48] 2025-10-06 16:04:12,392 | INFO     | . Timing measurements:
[2025-10-06 09:04:48] 2025-10-06 16:04:12,392 | INFO     | . get job = 0 s
[2025-10-06 09:04:48] 2025-10-06 16:04:12,392 | INFO     | . initial setup = 3 s
[2025-10-06 09:04:48] 2025-10-06 16:04:12,392 | INFO     | . payload setup = 15 s
[2025-10-06 09:04:48] 2025-10-06 16:04:12,392 | INFO     | . stage-in = 0 s
[2025-10-06 09:04:48] 2025-10-06 16:04:12,392 | INFO     | . payload execution = 29 s
[2025-10-06 09:04:48] 2025-10-06 16:04:12,392 | INFO     | . stage-out = 1 s
[2025-10-06 09:04:48] 2025-10-06 16:04:12,392 | INFO     | . log creation = 0 s
[2025-10-06 09:04:48] 2025-10-06 16:04:12,392 | INFO     | ..............................
[2025-10-06 09:04:48] 2025-10-06 16:04:12,393 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-06 09:04:48] 2025-10-06 16:04:12,393 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6832634273/pilotlog.txt
[2025-10-06 09:04:48] 2025-10-06 16:04:12,457 | WARNING  | 
[2025-10-06 09:04:48] [begin log extracts]
[2025-10-06 09:04:48] - Log from pilotlog.txt -
[2025-10-06 09:04:48] 2025-10-06 16:04:12,390 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6832634273/memory_monitor_summary.json (trf name=prmon)
[2025-10-06 09:04:48] 2025-10-06 16:04:12,391 | INFO     | extracted standard info from prmon json
[2025-10-06 09:04:48] 2025-10-06 16:04:12,391 | INFO     | extracted standard memory fields from prmon json
[2025-10-06 09:04:48] 2025-10-06 16:04:12,391 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-06 09:04:48] 2025-10-06 16:04:12,391 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-06 09:04:48] 2025-10-06 16:04:12,391 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-06 09:04:48] 2025-10-06 16:04:12,392 | WARNING  | wrong length of table data, x=[1759766499.0], y=[1105.0] (must be same and length>=4)
[2025-10-06 09:04:48] 2025-10-06 16:04:12,392 | INFO     | could have reported an average CPU frequency of 2755 MHz (4 samples)
[2025-10-06 09:04:48] 2025-10-06 16:04:12,392 | INFO     | ..............................
[2025-10-06 09:04:48] 2025-10-06 16:04:12,392 | INFO     | . Timing measurements:
[2025-10-06 09:04:48] 2025-10-06 16:04:12,392 | INFO     | . get job = 0 s
[2025-10-06 09:04:48] 2025-10-06 16:04:12,392 | INFO     | . initial setup = 3 s
[2025-10-06 09:04:48] 2025-10-06 16:04:12,392 | INFO     | . payload setup = 15 s
[2025-10-06 09:04:48] 2025-10-06 16:04:12,392 | INFO     | . stage-in = 0 s
[2025-10-06 09:04:48] 2025-10-06 16:04:12,392 | INFO     | . payload execution = 29 s
[2025-10-06 09:04:48] 2025-10-06 16:04:12,392 | INFO     | . stage-out = 1 s
[2025-10-06 09:04:48] 2025-10-06 16:04:12,392 | INFO     | . log creation = 0 s
[2025-10-06 09:04:48] 2025-10-06 16:04:12,392 | INFO     | ..............................
[2025-10-06 09:04:48] 2025-10-06 16:04:12,393 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-06 09:04:48] 2025-10-06 16:04:12,393 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6832634273/pilotlog.txt
[2025-10-06 09:04:48] [end log extracts]
[2025-10-06 09:04:48] 2025-10-06 16:04:12,457 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-06 09:04:48] 2025-10-06 16:04:12,458 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-10-06 09:04:48] 2025-10-06 16:04:12,605 | INFO     | time since job start (216s) is within the limit (172800.0s)
[2025-10-06 09:04:48] 2025-10-06 16:04:12,730 | INFO     | 
[2025-10-06 09:04:48] 2025-10-06 16:04:12,730 | INFO     | job summary report
[2025-10-06 09:04:48] 2025-10-06 16:04:12,730 | INFO     | --------------------------------------------------
[2025-10-06 09:04:48] 2025-10-06 16:04:12,730 | INFO     | PanDA job id: 6832634273
[2025-10-06 09:04:48] 2025-10-06 16:04:12,730 | INFO     | task id: 46376905
[2025-10-06 09:04:48] 2025-10-06 16:04:12,730 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-06 09:01:50,652 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-06 09:04:48] 2025-10-06 16:04:12,730 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-06 09:04:48] 2025-10-06 16:04:12,730 | INFO     | pilot state: failed 
[2025-10-06 09:04:48] 2025-10-06 16:04:12,730 | INFO     | transexitcode: 65
[2025-10-06 09:04:48] 2025-10-06 16:04:12,730 | INFO     | exeerrorcode: 65
[2025-10-06 09:04:48] 2025-10-06 16:04:12,730 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-10-06 09:04:48] 2025-10-06 16:04:12,730 | INFO     | exitcode: 65
[2025-10-06 09:04:48] 2025-10-06 16:04:12,730 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-10-06 09:04:48] 2025-10-06 16:04:12,730 | INFO     | cpuconsumptiontime: 16 s
[2025-10-06 09:04:48] 2025-10-06 16:04:12,730 | INFO     | nevents: 0
[2025-10-06 09:04:48] 2025-10-06 16:04:12,730 | INFO     | neventsw: 0
[2025-10-06 09:04:48] 2025-10-06 16:04:12,730 | INFO     | pid: 1492546
[2025-10-06 09:04:48] 2025-10-06 16:04:12,730 | INFO     | pgrp: 1492546
[2025-10-06 09:04:48] 2025-10-06 16:04:12,731 | INFO     | corecount: 12
[2025-10-06 09:04:48] 2025-10-06 16:04:12,731 | INFO     | event service: False
[2025-10-06 09:04:48] 2025-10-06 16:04:12,731 | INFO     | sizes: {0: 2348815, 11: 2348815, 12: 2349105, 22: 2349133, 49: 2372363, 51: 2376655, 54: 2376811, 182: 2376977}
[2025-10-06 09:04:48] 2025-10-06 16:04:12,731 | INFO     | --------------------------------------------------
[2025-10-06 09:04:48] 2025-10-06 16:04:12,731 | INFO     | 
[2025-10-06 09:04:48] 2025-10-06 16:04:12,731 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-10-06 09:04:48] 2025-10-06 16:04:12,768 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-06 09:04:48] 2025-10-06 16:04:12,768 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-06 09:04:48] 2025-10-06 16:04:12,768 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-06 09:04:48] 2025-10-06 16:04:12,768 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-06 09:04:48] 2025-10-06 16:04:12,768 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-06 09:04:48] 2025-10-06 16:04:12,768 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-06 09:04:48] 2025-10-06 16:04:12,768 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-06 09:04:48] 2025-10-06 16:04:12,768 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-06 09:04:48] 2025-10-06 16:04:12,768 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-06 09:04:48] 2025-10-06 16:04:12,769 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-06 09:04:48] 2025-10-06 16:04:12,769 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-06 09:04:48] 2025-10-06 16:04:12,769 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-06 09:04:48] 2025-10-06 16:04:12,769 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-06 09:04:48] 2025-10-06 16:04:12,769 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-06 09:04:48] 2025-10-06 16:04:12,769 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-06 09:04:48] 2025-10-06 16:04:12,769 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-06 09:04:48] 2025-10-06 16:04:12,769 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-06 09:04:48] 2025-10-06 16:04:12,769 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-06 09:04:48] 2025-10-06 16:04:12,769 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-06 09:04:48] 2025-10-06 16:04:12,769 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-06 09:04:48] 2025-10-06 16:04:12,769 | INFO     | job 6832634273 has completed (purged errors)
[2025-10-06 09:04:48] 2025-10-06 16:04:12,769 | INFO     | overall cleanup function is called
[2025-10-06 09:04:48] 2025-10-06 16:04:13,776 | INFO     | --- collectZombieJob: --- 10, [1492546]
[2025-10-06 09:04:48] 2025-10-06 16:04:13,776 | INFO     | zombie collector waiting for pid 1492546
[2025-10-06 09:04:48] 2025-10-06 16:04:13,776 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-06 09:04:48] 2025-10-06 16:04:13,776 | INFO     | collected zombie processes
[2025-10-06 09:04:48] 2025-10-06 16:04:13,776 | INFO     | will attempt to kill all subprocesses of pid=1492546
[2025-10-06 09:04:48] 2025-10-06 16:04:14,815 | INFO     | process IDs to be killed: [1492546] (in reverse order)
[2025-10-06 09:04:48] 2025-10-06 16:04:14,955 | WARNING  | found no corresponding commands to process id(s)
[2025-10-06 09:04:48] 2025-10-06 16:04:14,955 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-06 09:04:48] 2025-10-06 16:04:14,973 | INFO     | did not find any defunct processes belonging to 1492546
[2025-10-06 09:04:48] 2025-10-06 16:04:15,011 | INFO     | did not find any defunct processes belonging to 1492546
[2025-10-06 09:04:48] 2025-10-06 16:04:15,020 | INFO     | ready for new job
[2025-10-06 09:04:48] 2025-10-06 16:04:15,020 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-06 09:04:48] 2025-10-06 16:04:15,021 | INFO     | ***************************************
[2025-10-06 09:04:48] 2025-10-06 16:04:15,021 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-06 09:04:48] 2025-10-06 16:04:15,021 | INFO     | ***************************************
[2025-10-06 09:04:48] 2025-10-06 16:04:15,021 | INFO     | 
[2025-10-06 09:04:48] 2025-10-06 16:04:15,023 | INFO     | architecture information:
[2025-10-06 09:04:48] 2025-10-06 16:04:15,023 | INFO     | executing command: cat /etc/os-release
[2025-10-06 09:04:48] 2025-10-06 16:04:15,100 | INFO     | cat /etc/os-release:
[2025-10-06 09:04:48] NAME="CentOS Linux"
[2025-10-06 09:04:48] VERSION="7 (Core)"
[2025-10-06 09:04:48] ID="centos"
[2025-10-06 09:04:48] ID_LIKE="rhel fedora"
[2025-10-06 09:04:48] VERSION_ID="7"
[2025-10-06 09:04:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-06 09:04:48] ANSI_COLOR="0;31"
[2025-10-06 09:04:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-06 09:04:48] HOME_URL="https://www.centos.org/"
[2025-10-06 09:04:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-06 09:04:48] 
[2025-10-06 09:04:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-06 09:04:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-06 09:04:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-06 09:04:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-06 09:04:48] 
[2025-10-06 09:04:48] 2025-10-06 16:04:15,100 | INFO     | ***************************************
[2025-10-06 09:04:48] 2025-10-06 16:04:15,604 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-10-06 09:04:48] 2025-10-06 16:04:15,688 | INFO     | sufficient remaining disk space (2140597649408 B)
[2025-10-06 09:04:48] 2025-10-06 16:04:15,688 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-06 09:04:48] 2025-10-06 16:04:15,688 | INFO     | current server update state: UPDATING_FINAL
[2025-10-06 09:04:48] 2025-10-06 16:04:15,688 | INFO     | update_server=False
[2025-10-06 09:04:48] 2025-10-06 16:04:15,688 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-06 09:04:48] 2025-10-06 16:04:15,689 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-06 09:04:48] 2025-10-06 16:04:15,689 | INFO     | aborting loop
[2025-10-06 09:04:48] 2025-10-06 16:04:15,764 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-06 09:04:48] 2025-10-06 16:04:16,155 | INFO     | all data control threads have been joined
[2025-10-06 09:04:48] 2025-10-06 16:04:16,695 | INFO     | [job] retrieve thread has finished
[2025-10-06 09:04:48] 2025-10-06 16:04:16,695 | INFO     | [job] job monitor thread has finished
[2025-10-06 09:04:48] 2025-10-06 16:04:16,807 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-06 09:04:48] 2025-10-06 16:04:16,808 | INFO     | [payload] validate_post thread has finished
[2025-10-06 09:04:48] 2025-10-06 16:04:16,859 | INFO     | all payload control threads have been joined
[2025-10-06 09:04:48] 2025-10-06 16:04:16,959 | INFO     | all job control threads have been joined
[2025-10-06 09:04:48] 2025-10-06 16:04:17,149 | INFO     | [payload] validate_pre thread has finished
[2025-10-06 09:04:48] 2025-10-06 16:04:17,161 | INFO     | [data] control thread has finished
[2025-10-06 09:04:48] 2025-10-06 16:04:17,190 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-06 09:04:48] 2025-10-06 16:04:17,253 | INFO     | [data] copytool_in thread has finished
[2025-10-06 09:04:48] 2025-10-06 16:04:17,745 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-06 09:04:48] 2025-10-06 16:04:17,771 | INFO     | [data] copytool_out thread has finished
[2025-10-06 09:04:48] 2025-10-06 16:04:17,865 | INFO     | [payload] control thread has finished
[2025-10-06 09:04:48] 2025-10-06 16:04:17,965 | INFO     | [job] control thread has finished
[2025-10-06 09:04:48] 2025-10-06 16:04:18,065 | INFO     | [job] create_data_payload thread has finished
[2025-10-06 09:04:48] 2025-10-06 16:04:18,127 | INFO     | [payload] execute_payloads thread has finished
[2025-10-06 09:04:48] 2025-10-06 16:04:18,130 | INFO     | [job] validate thread has finished
[2025-10-06 09:04:48] 2025-10-06 16:04:18,246 | INFO     | [payload] failed_post thread has finished
[2025-10-06 09:04:48] 2025-10-06 16:04:18,751 | INFO     | [job] queue monitor thread has finished
[2025-10-06 09:04:48] 2025-10-06 16:04:21,207 | INFO     | [data] queue_monitor thread has finished
[2025-10-06 09:04:48] 2025-10-06 16:04:36,747 | INFO     | [monitor] cgroup control has ended
[2025-10-06 09:04:48] 2025-10-06 16:04:37,754 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139994233141056)>', '<ExcThread(monitor, started 139993838245632)>']
[2025-10-06 09:04:48] 2025-10-06 16:04:42,780 | INFO     | all workflow threads have been joined
[2025-10-06 09:04:48] 2025-10-06 16:04:42,780 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-06 09:04:48] 2025-10-06 16:04:42,780 | INFO     | traces error code: 0
[2025-10-06 09:04:48] 2025-10-06 16:04:42,780 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-06 09:04:48] 2025-10-06 16:04:46,402 | INFO     | PID=1485819 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-06 09:04:48] 2025-10-06 16:04:46,406 | INFO     | .. there are 42 such processes running
[2025-10-06 09:04:48] 2025-10-06 16:04:46,406 | INFO     | found 0 job(s) in 20 queues
[2025-10-06 09:04:48] 2025-10-06 16:04:46,406 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-06 09:04:48] 2025-10-06 16:04:46,406 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-06 09:04:48] 2025-10-06 16:04:46,406 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-06 09:04:48] 2025-10-06 16:04:46,407 | CRITICAL | thread 'MainThread' is not alive
[2025-10-06 09:04:48] 2025-10-06 16:04:46,407 | INFO     | [monitor] control thread has ended
[2025-10-06 09:04:48] 2025-10-06 16:04:46,657 [wrapper] ==== pilot stdout END ====
[2025-10-06 09:04:48] 2025-10-06 16:04:46,692 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-06 09:04:48] 2025-10-06 16:04:46,709 [wrapper] pilotpid: 1485819
[2025-10-06 09:04:48] 2025-10-06 16:04:46,732 [wrapper] Pilot exit status: 0
[2025-10-06 09:04:48] 2025-10-06 16:04:46,844 [wrapper] pandaids: 6832634273
[2025-10-06 09:04:48] 2025-10-06 16:04:47,032 [wrapper] cleanup supervisor_pilot 1485825 1485820
[2025-10-06 09:04:48] 2025-10-06 16:04:47,072 [wrapper] Test setup, not cleaning
[2025-10-06 09:04:48] 2025-10-06 16:04:47,102 [wrapper] apfmon messages muted
[2025-10-06 09:04:48] 2025-10-06 16:04:47,166 [wrapper] ==== wrapper stdout END ====
[2025-10-06 09:04:48] 2025-10-06 16:04:47,196 [wrapper] ==== wrapper stderr END ====
[2025-10-06 09:04:48]  *** Error codes and diagnostics ***
[2025-10-06 09:04:48]     "exeErrorCode": 65,
[2025-10-06 09:04:48]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-10-06 09:04:48]     "pilotErrorCode": 1305,
[2025-10-06 09:04:48]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-10-06 09:04:48]  *** Listing of results directory ***
[2025-10-06 09:04:48] total 214928
[2025-10-06 09:04:48] -rw-r--r--. 1 boinc boinc    552446 Oct  6 03:36 pilot3.tar.gz
[2025-10-06 09:04:48] -rw-r--r--. 1 boinc boinc      5112 Oct  6 03:45 queuedata.json
[2025-10-06 09:04:48] -rwx------. 1 boinc boinc     36292 Oct  6 03:46 runpilot2-wrapper.sh
[2025-10-06 09:04:48] -rw-r--r--. 1 boinc boinc       100 Oct  6 09:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-06 09:04:48] -rwxr-xr-x. 1 boinc boinc      7986 Oct  6 09:00 run_atlas
[2025-10-06 09:04:48] -rw-r--r--. 1 boinc boinc       105 Oct  6 09:00 job.xml
[2025-10-06 09:04:48] -rw-r--r--. 1 boinc boinc      6593 Oct  6 09:00 init_data.xml
[2025-10-06 09:04:48] -rw-r--r--. 2 boinc boinc 215980892 Oct  6 09:00 EVNT.46376901._004069.pool.root.1
[2025-10-06 09:04:48] -rw-r--r--. 2 boinc boinc     15120 Oct  6 09:00 start_atlas.sh
[2025-10-06 09:04:48] drwxrwx--x. 2 boinc boinc      4096 Oct  6 09:00 shared
[2025-10-06 09:04:48] -rw-r--r--. 2 boinc boinc    565602 Oct  6 09:00 input.tar.gz
[2025-10-06 09:04:48] -rw-r--r--. 1 boinc boinc         0 Oct  6 09:00 boinc_lockfile
[2025-10-06 09:04:48] -rw-r--r--. 1 boinc boinc      2520 Oct  6 09:00 pandaJob.out
[2025-10-06 09:04:48] -rw-------. 1 boinc boinc    975002 Oct  6 09:00 agis_schedconf.cvmfs.json
[2025-10-06 09:04:48] -rw-------. 1 boinc boinc   1560401 Oct  6 09:00 agis_ddmendpoints.agis.ALL.json
[2025-10-06 09:04:48] drwx------. 4 boinc boinc      4096 Oct  6 09:00 pilot3
[2025-10-06 09:04:48] -rw-------. 1 boinc boinc       964 Oct  6 09:01 memory_monitor_summary.json
[2025-10-06 09:04:48] -rw-------. 1 boinc boinc     21959 Oct  6 09:02 log.46376905._109781.job.log.tgz.1
[2025-10-06 09:04:48] -rw-------. 1 boinc boinc      8404 Oct  6 09:04 heartbeat.json
[2025-10-06 09:04:48] -rw-r--r--. 1 boinc boinc        22 Oct  6 09:04 wrapper_checkpoint.txt
[2025-10-06 09:04:48] -rw-r--r--. 1 boinc boinc       524 Oct  6 09:04 boinc_task_state.xml
[2025-10-06 09:04:48] -rw-------. 1 boinc boinc        95 Oct  6 09:04 pilot_heartbeat.json
[2025-10-06 09:04:48] -rw-------. 1 boinc boinc       893 Oct  6 09:04 pilotlog.txt
[2025-10-06 09:04:48] -rw-------. 1 boinc boinc     88491 Oct  6 09:04 log.46376905._109781.job.log.1
[2025-10-06 09:04:48] -rw-------. 1 boinc boinc       188 Oct  6 09:04 output.list
[2025-10-06 09:04:48] -rw-r--r--. 1 boinc boinc       620 Oct  6 09:04 runtime_log
[2025-10-06 09:04:48] -rw-------. 1 boinc boinc    133120 Oct  6 09:04 result.tar.gz
[2025-10-06 09:04:48] -rw-r--r--. 1 boinc boinc      8528 Oct  6 09:04 runtime_log.err
[2025-10-06 09:04:48] -rw-------. 1 boinc boinc       643 Oct  6 09:04 kp3KDmquxP8n9Rq4apOajLDm4fhM0noT9bVof3QYDmC2IMDmglAZHo.diag
[2025-10-06 09:04:48] -rw-r--r--. 1 boinc boinc      8192 Oct  6 09:04 boinc_mmap_file
[2025-10-06 09:04:48] -rw-r--r--. 1 boinc boinc     21802 Oct  6 09:04 stderr.txt
[2025-10-06 09:04:48] No HITS result produced
[2025-10-06 09:04:48]  *** Contents of shared directory: ***
[2025-10-06 09:04:48] total 211624
[2025-10-06 09:04:48] -rw-r--r--. 2 boinc boinc 215980892 Oct  6 09:00 ATLAS.root_0
[2025-10-06 09:04:48] -rw-r--r--. 2 boinc boinc     15120 Oct  6 09:00 start_atlas.sh
[2025-10-06 09:04:48] -rw-r--r--. 2 boinc boinc    565602 Oct  6 09:00 input.tar.gz
[2025-10-06 09:04:48] -rw-------. 1 boinc boinc    133120 Oct  6 09:04 result.tar.gz
09:04:50 (1481883): run_atlas exited; CPU time 25.401493
09:04:50 (1481883): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN