Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:14:53 (1766030): wrapper (7.7.26015): starting
03:14:53 (1766030): wrapper: running run_atlas (--nthreads 6)
[2025-10-07 03:14:53] Arguments: --nthreads 6
[2025-10-07 03:14:53] Threads: 6
[2025-10-07 03:14:53] Checking for CVMFS
[2025-10-07 03:14:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-07 03:14:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-07 03:14:53] Running cvmfs_config stat atlas.cern.ch
[2025-10-07 03:14:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-07 03:14:54] 2.11.5.0 375178 1300 67904 151407 1 57 37640426 52428800 1858 130560 0 4400179 99.998 46874 15 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-07 03:14:54] CVMFS is ok
[2025-10-07 03:14:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-07 03:14:54] Checking for apptainer binary...
[2025-10-07 03:14:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-07 03:14:54] Running /usr/bin/apptainer --version
[2025-10-07 03:14:54] apptainer version 1.3.5-1.el9
[2025-10-07 03:14:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-07 03:14:54] testio008
[2025-10-07 03:14:54] apptainer works
[2025-10-07 03:14:54] Set ATHENA_PROC_NUMBER=6
[2025-10-07 03:14:54] Set ATHENA_CORE_NUMBER=6
[2025-10-07 03:14:54] Starting ATLAS job with PandaID=6832426357
[2025-10-07 03:14:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-07 04:18:12]  *** The last 200 lines of the pilot log: ***
[2025-10-07 04:18:12] 2025-10-06 19:16:45,146 | INFO     | .. there are 3 such processes running
[2025-10-07 04:18:12] 2025-10-06 19:16:45,895 | INFO     | monitor loop #294: job 0:6832426357 is in state 'finished'
[2025-10-07 04:18:12] 2025-10-06 19:16:45,896 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 04:18:12] 2025-10-06 19:16:46,146 | INFO     | time since job start (3705s) is within the limit (172800.0s)
[2025-10-07 04:18:12] 2025-10-06 19:16:48,152 | INFO     | time since job start (3707s) is within the limit (172800.0s)
[2025-10-07 04:18:12] 2025-10-06 19:16:48,398 | INFO     | monitor loop #295: job 0:6832426357 is in state 'finished'
[2025-10-07 04:18:12] 2025-10-06 19:16:48,399 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 04:18:12] 2025-10-06 19:16:50,157 | INFO     | time since job start (3709s) is within the limit (172800.0s)
[2025-10-07 04:18:12] 2025-10-06 19:16:50,901 | INFO     | monitor loop #296: job 0:6832426357 is in state 'finished'
[2025-10-07 04:18:12] 2025-10-06 19:16:50,902 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 04:18:12] 2025-10-06 19:16:52,160 | INFO     | time since job start (3711s) is within the limit (172800.0s)
[2025-10-07 04:18:12] 2025-10-06 19:16:53,404 | INFO     | monitor loop #297: job 0:6832426357 is in state 'finished'
[2025-10-07 04:18:12] 2025-10-06 19:16:53,405 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 04:18:12] 2025-10-06 19:16:54,165 | INFO     | time since job start (3713s) is within the limit (172800.0s)
[2025-10-07 04:18:12] 2025-10-06 19:16:55,907 | INFO     | monitor loop #298: job 0:6832426357 is in state 'finished'
[2025-10-07 04:18:12] 2025-10-06 19:16:55,908 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 04:18:12] 2025-10-06 19:16:56,170 | INFO     | time since job start (3715s) is within the limit (172800.0s)
[2025-10-07 04:18:12] 2025-10-06 19:16:58,175 | INFO     | time since job start (3717s) is within the limit (172800.0s)
[2025-10-07 04:18:12] 2025-10-06 19:16:58,410 | INFO     | monitor loop #299: job 0:6832426357 is in state 'finished'
[2025-10-07 04:18:12] 2025-10-06 19:16:58,411 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 04:18:12] 2025-10-06 19:17:00,180 | INFO     | time since job start (3719s) is within the limit (172800.0s)
[2025-10-07 04:18:12] 2025-10-06 19:17:00,913 | INFO     | monitor loop #300: job 0:6832426357 is in state 'finished'
[2025-10-07 04:18:12] 2025-10-06 19:17:00,913 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 04:18:12] 2025-10-06 19:17:02,185 | INFO     | time since job start (3721s) is within the limit (172800.0s)
[2025-10-07 04:18:12] 2025-10-06 19:17:03,416 | INFO     | monitor loop #301: job 0:6832426357 is in state 'finished'
[2025-10-07 04:18:12] 2025-10-06 19:17:03,416 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 04:18:12] 2025-10-06 19:17:04,191 | INFO     | time since job start (3723s) is within the limit (172800.0s)
[2025-10-07 04:18:12] 2025-10-06 19:17:05,918 | INFO     | monitor loop #302: job 0:6832426357 is in state 'finished'
[2025-10-07 04:18:12] 2025-10-06 19:17:05,919 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 04:18:12] 2025-10-06 19:17:06,191 | INFO     | time since job start (3725s) is within the limit (172800.0s)
[2025-10-07 04:18:12] 2025-10-06 19:17:07,237 | INFO     | PID=1769822 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-07 04:18:12] 2025-10-06 19:17:07,237 | INFO     | .. there are 3 such processes running
[2025-10-07 04:18:12] 2025-10-06 19:17:08,237 | INFO     | time since job start (3727s) is within the limit (172800.0s)
[2025-10-07 04:18:12] 2025-10-06 19:17:08,420 | INFO     | monitor loop #303: job 0:6832426357 is in state 'finished'
[2025-10-07 04:18:12] 2025-10-06 19:17:08,421 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 04:18:12] 2025-10-06 19:17:09,932 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-07 04:18:12] 2025-10-06 19:17:09,933 | INFO     | found 12 cores (12 cores per socket, 1 socket) , CPU MHz: 4121.3072
[2025-10-07 04:18:12] 2025-10-06 19:17:09,935 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6832426357/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 04:18:12] 2025-10-06 19:17:09,935 | INFO     | extracted standard info from prmon json
[2025-10-07 04:18:12] 2025-10-06 19:17:09,935 | INFO     | extracted standard memory fields from prmon json
[2025-10-07 04:18:12] 2025-10-06 19:17:09,935 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-07 04:18:12] 2025-10-06 19:17:09,935 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-07 04:18:12] 2025-10-06 19:17:09,935 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-07 04:18:12] 2025-10-06 19:17:09,936 | INFO     | fitting pss+swap vs Time
[2025-10-07 04:18:12] 2025-10-06 19:17:09,936 | INFO     | sum of square deviations: 46147842.0
[2025-10-07 04:18:12] 2025-10-06 19:17:09,936 | INFO     | sum of deviations: 727690838.0000002
[2025-10-07 04:18:12] 2025-10-06 19:17:09,936 | INFO     | mean x: 1759776409.0
[2025-10-07 04:18:12] 2025-10-06 19:17:09,936 | INFO     | mean y: 2468922.037735849
[2025-10-07 04:18:12] 2025-10-06 19:17:09,937 | INFO     | -- intersect: -27746893003.8751
[2025-10-07 04:18:12] 2025-10-06 19:17:09,937 | INFO     | intersect: -27746893003.8751
[2025-10-07 04:18:12] 2025-10-06 19:17:09,937 | INFO     | chi2: 0.009871057758805698
[2025-10-07 04:18:12] 2025-10-06 19:17:09,937 | INFO     | -- intersect: -27746893003.8751
[2025-10-07 04:18:12] 2025-10-06 19:17:09,937 | INFO     | current memory leak: 15.77 B/s (using 53 data points, chi2=0.01)
[2025-10-07 04:18:12] 2025-10-06 19:17:09,937 | INFO     | could have reported an average CPU frequency of 4056 MHz (5 samples)
[2025-10-07 04:18:12] 2025-10-06 19:17:09,937 | INFO     | ..............................
[2025-10-07 04:18:12] 2025-10-06 19:17:09,937 | INFO     | . Timing measurements:
[2025-10-07 04:18:12] 2025-10-06 19:17:09,937 | INFO     | . get job = 0 s
[2025-10-07 04:18:12] 2025-10-06 19:17:09,937 | INFO     | . initial setup = 4 s
[2025-10-07 04:18:12] 2025-10-06 19:17:09,937 | INFO     | . payload setup = 2 s
[2025-10-07 04:18:12] 2025-10-06 19:17:09,937 | INFO     | . stage-in = 0 s
[2025-10-07 04:18:12] 2025-10-06 19:17:09,937 | INFO     | . payload execution = 3631 s
[2025-10-07 04:18:12] 2025-10-06 19:17:09,937 | INFO     | . stage-out = 0 s
[2025-10-07 04:18:12] 2025-10-06 19:17:09,937 | INFO     | . log creation = 0 s
[2025-10-07 04:18:12] 2025-10-06 19:17:09,937 | INFO     | ..............................
[2025-10-07 04:18:12] 2025-10-06 19:17:09,980 | INFO     | 
[2025-10-07 04:18:12] 2025-10-06 19:17:09,980 | INFO     | job summary report
[2025-10-07 04:18:12] 2025-10-06 19:17:09,980 | INFO     | --------------------------------------------------
[2025-10-07 04:18:12] 2025-10-06 19:17:09,980 | INFO     | PanDA job id: 6832426357
[2025-10-07 04:18:12] 2025-10-06 19:17:09,980 | INFO     | task id: 46376905
[2025-10-07 04:18:12] 2025-10-06 19:17:09,980 | INFO     | errors: (none)
[2025-10-07 04:18:12] 2025-10-06 19:17:09,980 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-07 04:18:12] 2025-10-06 19:17:09,980 | INFO     | pilot state: finished 
[2025-10-07 04:18:12] 2025-10-06 19:17:09,980 | INFO     | transexitcode: 0
[2025-10-07 04:18:12] 2025-10-06 19:17:09,980 | INFO     | exeerrorcode: 0
[2025-10-07 04:18:12] 2025-10-06 19:17:09,980 | INFO     | exeerrordiag: 
[2025-10-07 04:18:12] 2025-10-06 19:17:09,980 | INFO     | exitcode: 0
[2025-10-07 04:18:12] 2025-10-06 19:17:09,980 | INFO     | exitmsg: OK
[2025-10-07 04:18:12] 2025-10-06 19:17:09,980 | INFO     | cpuconsumptiontime: 19311 s
[2025-10-07 04:18:12] 2025-10-06 19:17:09,980 | INFO     | nevents: 400
[2025-10-07 04:18:12] 2025-10-06 19:17:09,980 | INFO     | neventsw: 0
[2025-10-07 04:18:12] 2025-10-06 19:17:09,980 | INFO     | pid: 1776625
[2025-10-07 04:18:12] 2025-10-06 19:17:09,981 | INFO     | pgrp: 1776625
[2025-10-07 04:18:12] 2025-10-06 19:17:09,981 | INFO     | corecount: 6
[2025-10-07 04:18:12] 2025-10-06 19:17:09,981 | INFO     | event service: False
[2025-10-07 04:18:12] 2025-10-06 19:17:09,981 | INFO     | sizes: {0: 2348816, 2: 2349078, 10: 2349106, 3637: 2374809, 3638: 2383807, 3639: 2383891, 3716: 2384245}
[2025-10-07 04:18:12] 2025-10-06 19:17:09,981 | INFO     | --------------------------------------------------
[2025-10-07 04:18:12] 2025-10-06 19:17:09,981 | INFO     | 
[2025-10-07 04:18:12] 2025-10-06 19:17:09,981 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2025-10-07 04:18:12] 2025-10-06 19:17:09,988 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-07 04:18:12] 2025-10-06 19:17:09,988 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-07 04:18:12] 2025-10-06 19:17:09,988 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-07 04:18:12] 2025-10-06 19:17:09,988 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-07 04:18:12] 2025-10-06 19:17:09,988 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-07 04:18:12] 2025-10-06 19:17:09,988 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-07 04:18:12] 2025-10-06 19:17:09,988 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-07 04:18:12] 2025-10-06 19:17:09,988 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-07 04:18:12] 2025-10-06 19:17:09,989 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-07 04:18:12] 2025-10-06 19:17:09,989 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-07 04:18:12] 2025-10-06 19:17:09,989 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-07 04:18:12] 2025-10-06 19:17:09,989 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-07 04:18:12] 2025-10-06 19:17:09,989 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-07 04:18:12] 2025-10-06 19:17:09,989 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-07 04:18:12] 2025-10-06 19:17:09,989 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-07 04:18:12] 2025-10-06 19:17:09,989 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-07 04:18:12] 2025-10-06 19:17:09,989 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-07 04:18:12] 2025-10-06 19:17:09,989 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-07 04:18:12] 2025-10-06 19:17:09,989 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-07 04:18:12] 2025-10-06 19:17:09,989 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-07 04:18:12] 2025-10-06 19:17:09,989 | INFO     | job 6832426357 has completed (purged errors)
[2025-10-07 04:18:12] 2025-10-06 19:17:09,989 | INFO     | overall cleanup function is called
[2025-10-07 04:18:12] 2025-10-06 19:17:10,994 | INFO     | --- collectZombieJob: --- 10, [1776625]
[2025-10-07 04:18:12] 2025-10-06 19:17:10,995 | INFO     | zombie collector waiting for pid 1776625
[2025-10-07 04:18:12] 2025-10-06 19:17:10,995 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-07 04:18:12] 2025-10-06 19:17:10,995 | INFO     | collected zombie processes
[2025-10-07 04:18:12] 2025-10-06 19:17:10,995 | INFO     | will attempt to kill all subprocesses of pid=1776625
[2025-10-07 04:18:12] 2025-10-06 19:17:11,032 | INFO     | process IDs to be killed: [1776625] (in reverse order)
[2025-10-07 04:18:12] 2025-10-06 19:17:11,052 | WARNING  | found no corresponding commands to process id(s)
[2025-10-07 04:18:12] 2025-10-06 19:17:11,052 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-07 04:18:12] 2025-10-06 19:17:11,054 | INFO     | did not find any defunct processes belonging to 1776625
[2025-10-07 04:18:12] 2025-10-06 19:17:11,055 | INFO     | did not find any defunct processes belonging to 1776625
[2025-10-07 04:18:12] 2025-10-06 19:17:11,055 | INFO     | ready for new job
[2025-10-07 04:18:12] 2025-10-06 19:17:11,056 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-07 04:18:12] 2025-10-06 19:17:11,056 | INFO     | ***************************************
[2025-10-07 04:18:12] 2025-10-06 19:17:11,056 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-07 04:18:12] 2025-10-06 19:17:11,056 | INFO     | ***************************************
[2025-10-07 04:18:12] 2025-10-06 19:17:11,056 | INFO     | 
[2025-10-07 04:18:12] 2025-10-06 19:17:11,057 | INFO     | architecture information:
[2025-10-07 04:18:12] 2025-10-06 19:17:11,057 | INFO     | executing command: cat /etc/os-release
[2025-10-07 04:18:12] 2025-10-06 19:17:11,065 | INFO     | cat /etc/os-release:
[2025-10-07 04:18:12] NAME="CentOS Linux"
[2025-10-07 04:18:12] VERSION="7 (Core)"
[2025-10-07 04:18:12] ID="centos"
[2025-10-07 04:18:12] ID_LIKE="rhel fedora"
[2025-10-07 04:18:12] VERSION_ID="7"
[2025-10-07 04:18:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-07 04:18:12] ANSI_COLOR="0;31"
[2025-10-07 04:18:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-07 04:18:12] HOME_URL="https://www.centos.org/"
[2025-10-07 04:18:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-07 04:18:12] 
[2025-10-07 04:18:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-07 04:18:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-07 04:18:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-07 04:18:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-07 04:18:12] 
[2025-10-07 04:18:12] 2025-10-06 19:17:11,065 | INFO     | ***************************************
[2025-10-07 04:18:12] 2025-10-06 19:17:11,567 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2025-10-07 04:18:12] 2025-10-06 19:17:11,574 | INFO     | sufficient remaining disk space (282400391168 B)
[2025-10-07 04:18:12] 2025-10-06 19:17:11,574 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-07 04:18:12] 2025-10-06 19:17:11,574 | INFO     | current server update state: UPDATING_FINAL
[2025-10-07 04:18:12] 2025-10-06 19:17:11,574 | INFO     | update_server=False
[2025-10-07 04:18:12] 2025-10-06 19:17:11,574 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-07 04:18:12] 2025-10-06 19:17:11,574 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-07 04:18:12] 2025-10-06 19:17:11,590 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-07 04:18:12] 2025-10-06 19:17:11,631 | INFO     | all payload control threads have been joined
[2025-10-07 04:18:12] 2025-10-06 19:17:11,928 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-07 04:18:12] 2025-10-06 19:17:11,929 | INFO     | aborting loop
[2025-10-07 04:18:12] 2025-10-06 19:17:12,373 | INFO     | all data control threads have been joined
[2025-10-07 04:18:12] 2025-10-06 19:17:12,549 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-07 04:18:12] 2025-10-06 19:17:12,579 | INFO     | [job] queue monitor thread has finished
[2025-10-07 04:18:12] 2025-10-06 19:17:12,580 | INFO     | [job] retrieve thread has finished
[2025-10-07 04:18:12] 2025-10-06 19:17:12,636 | INFO     | [payload] control thread has finished
[2025-10-07 04:18:12] 2025-10-06 19:17:12,681 | INFO     | [payload] validate_post thread has finished
[2025-10-07 04:18:12] 2025-10-06 19:17:12,758 | INFO     | all job control threads have been joined
[2025-10-07 04:18:12] 2025-10-06 19:17:12,911 | INFO     | [job] validate thread has finished
[2025-10-07 04:18:12] 2025-10-06 19:17:12,933 | INFO     | [job] job monitor thread has finished
[2025-10-07 04:18:12] 2025-10-06 19:17:13,038 | INFO     | [payload] validate_pre thread has finished
[2025-10-07 04:18:12] 2025-10-06 19:17:13,042 | INFO     | [job] create_data_payload thread has finished
[2025-10-07 04:18:12] 2025-10-06 19:17:13,150 | INFO     | [payload] failed_post thread has finished
[2025-10-07 04:18:12] 2025-10-06 19:17:13,378 | INFO     | [data] control thread has finished
[2025-10-07 04:18:12] 2025-10-06 19:17:13,610 | INFO     | [payload] execute_payloads thread has finished
[2025-10-07 04:18:12] 2025-10-06 19:17:13,613 | INFO     | [data] copytool_in thread has finished
[2025-10-07 04:18:12] 2025-10-06 19:17:13,763 | INFO     | [job] control thread has finished
[2025-10-07 04:18:12] 2025-10-06 19:17:14,554 | INFO     | [data] copytool_out thread has finished
[2025-10-07 04:18:12] 2025-10-06 19:17:15,595 | INFO     | [data] queue_monitor thread has finished
[2025-10-07 04:18:12] 2025-10-06 19:17:21,658 | INFO     | job.realtimelogging is not enabled
[2025-10-07 04:18:12] 2025-10-06 19:17:22,664 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-07 04:18:12] 2025-10-06 19:17:41,339 | INFO     | PID=1769822 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-07 04:18:12] 2025-10-06 19:17:41,339 | INFO     | .. there are 3 such processes running
[2025-10-07 04:18:12] 2025-10-06 19:17:41,339 | INFO     | found 0 job(s) in 20 queues
[2025-10-07 04:18:12] 2025-10-06 19:17:41,339 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-07 04:18:12] 2025-10-06 19:17:41,340 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-07 04:18:12] 2025-10-06 19:18:07,422 | INFO     | [monitor] cgroup control has ended
[2025-10-07 04:18:12] 2025-10-06 19:18:07,618 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140282933929792)>', '<ExcThread(monitor, started 140282154710784)>']
[2025-10-07 04:18:12] 2025-10-06 19:18:08,474 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-07 04:18:12] 2025-10-06 19:18:08,475 | INFO     | [monitor] control thread has ended
[2025-10-07 04:18:12] 2025-10-06 19:18:12,643 | INFO     | all workflow threads have been joined
[2025-10-07 04:18:12] 2025-10-06 19:18:12,643 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-07 04:18:12] 2025-10-06 19:18:12,643 | INFO     | traces error code: 0
[2025-10-07 04:18:12] 2025-10-06 19:18:12,644 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-07 04:18:12] 2025-10-06 19:18:12,693 [wrapper] ==== pilot stdout END ====
[2025-10-07 04:18:12] 2025-10-06 19:18:12,694 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-07 04:18:12] 2025-10-06 19:18:12,695 [wrapper] pilotpid: 1769822
[2025-10-07 04:18:12] 2025-10-06 19:18:12,696 [wrapper] Pilot exit status: 0
[2025-10-07 04:18:12] 2025-10-06 19:18:12,700 [wrapper] pandaids: 6832426357
[2025-10-07 04:18:12] 2025-10-06 19:18:12,712 [wrapper] cleanup supervisor_pilot 1830089 1769823
[2025-10-07 04:18:12] 2025-10-06 19:18:12,713 [wrapper] Test setup, not cleaning
[2025-10-07 04:18:12] 2025-10-06 19:18:12,715 [wrapper] apfmon messages muted
[2025-10-07 04:18:12] 2025-10-06 19:18:12,716 [wrapper] ==== wrapper stdout END ====
[2025-10-07 04:18:12] 2025-10-06 19:18:12,716 [wrapper] ==== wrapper stderr END ====
[2025-10-07 04:18:12]  *** Error codes and diagnostics ***
[2025-10-07 04:18:12]     "exeErrorCode": 0,
[2025-10-07 04:18:12]     "exeErrorDiag": "",
[2025-10-07 04:18:12]     "pilotErrorCode": 0,
[2025-10-07 04:18:12]     "pilotErrorDiag": "",
[2025-10-07 04:18:12]  *** Listing of results directory ***
[2025-10-07 04:18:12] total 390456
[2025-10-07 04:18:12] -rw-r--r--. 1 boinc boinc    552446 Oct  6 15:44 pilot3.tar.gz
[2025-10-07 04:18:12] -rw-r--r--. 1 boinc boinc      5112 Oct  6 16:00 queuedata.json
[2025-10-07 04:18:12] -rwx------. 1 boinc boinc     36292 Oct  6 16:01 runpilot2-wrapper.sh
[2025-10-07 04:18:12] -rw-r--r--. 1 boinc boinc       100 Oct  7 03:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-07 04:18:12] -rwxr-xr-x. 1 boinc boinc      7986 Oct  7 03:14 run_atlas
[2025-10-07 04:18:12] -rw-r--r--. 1 boinc boinc       105 Oct  7 03:14 job.xml
[2025-10-07 04:18:12] -rw-r--r--. 1 boinc boinc      9509 Oct  7 03:14 init_data.xml
[2025-10-07 04:18:12] -rw-r--r--. 2 boinc boinc 216814478 Oct  7 03:14 EVNT.46376901._003981.pool.root.1
[2025-10-07 04:18:12] -rw-r--r--. 2 boinc boinc     15120 Oct  7 03:14 start_atlas.sh
[2025-10-07 04:18:12] drwxrwx--x. 2 boinc boinc        68 Oct  7 03:14 shared
[2025-10-07 04:18:12] -rw-r--r--. 2 boinc boinc    565603 Oct  7 03:14 input.tar.gz
[2025-10-07 04:18:12] -rw-r--r--. 1 boinc boinc         0 Oct  7 03:14 boinc_lockfile
[2025-10-07 04:18:12] -rw-r--r--. 1 boinc boinc      2519 Oct  7 03:14 pandaJob.out
[2025-10-07 04:18:12] -rw-------. 1 boinc boinc    975018 Oct  7 03:14 agis_schedconf.cvmfs.json
[2025-10-07 04:18:12] -rw-------. 1 boinc boinc   1560401 Oct  7 03:15 agis_ddmendpoints.agis.ALL.json
[2025-10-07 04:18:12] drwx------. 4 boinc boinc      4096 Oct  7 03:15 pilot3
[2025-10-07 04:18:12] -rw-------. 1 boinc boinc 177448035 Oct  7 04:15 HITS.46376905._107410.pool.root.1
[2025-10-07 04:18:12] -rw-r--r--. 1 boinc boinc       529 Oct  7 04:15 boinc_task_state.xml
[2025-10-07 04:18:12] -rw-------. 1 boinc boinc      1022 Oct  7 04:15 memory_monitor_summary.json
[2025-10-07 04:18:12] -rw-------. 1 boinc boinc    279231 Oct  7 04:15 log.46376905._107410.job.log.tgz.1
[2025-10-07 04:18:12] -rw-------. 1 boinc boinc      7765 Oct  7 04:17 heartbeat.json
[2025-10-07 04:18:12] -rw-------. 1 boinc boinc        95 Oct  7 04:17 pilot_heartbeat.json
[2025-10-07 04:18:12] -rw-r--r--. 1 boinc boinc        27 Oct  7 04:17 wrapper_checkpoint.txt
[2025-10-07 04:18:12] -rw-r--r--. 1 boinc boinc      8192 Oct  7 04:17 boinc_mmap_file
[2025-10-07 04:18:12] -rw-------. 1 boinc boinc      4896 Oct  7 04:18 pilotlog.txt
[2025-10-07 04:18:12] -rw-------. 1 boinc boinc    563230 Oct  7 04:18 log.46376905._107410.job.log.1
[2025-10-07 04:18:12] -rw-------. 1 boinc boinc       357 Oct  7 04:18 output.list
[2025-10-07 04:18:12] -rw-r--r--. 1 boinc boinc       620 Oct  7 04:18 runtime_log
[2025-10-07 04:18:12] -rw-------. 1 boinc boinc    860160 Oct  7 04:18 result.tar.gz
[2025-10-07 04:18:12] -rw-------. 1 boinc boinc       641 Oct  7 04:18 w5NNDmrOuP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmutSNDmzCo3kn.diag
[2025-10-07 04:18:12] -rw-r--r--. 1 boinc boinc      8661 Oct  7 04:18 runtime_log.err
[2025-10-07 04:18:12] -rw-r--r--. 1 boinc boinc     21905 Oct  7 04:18 stderr.txt
[2025-10-07 04:18:12] HITS file was successfully produced:
[2025-10-07 04:18:12] -rw-------. 1 boinc boinc 177448035 Oct  7 04:15 shared/HITS.pool.root.1
[2025-10-07 04:18:12]  *** Contents of shared directory: ***
[2025-10-07 04:18:12] total 386440
[2025-10-07 04:18:12] -rw-r--r--. 2 boinc boinc 216814478 Oct  7 03:14 ATLAS.root_0
[2025-10-07 04:18:12] -rw-r--r--. 2 boinc boinc     15120 Oct  7 03:14 start_atlas.sh
[2025-10-07 04:18:12] -rw-r--r--. 2 boinc boinc    565603 Oct  7 03:14 input.tar.gz
[2025-10-07 04:18:12] -rw-------. 1 boinc boinc 177448035 Oct  7 04:15 HITS.pool.root.1
[2025-10-07 04:18:12] -rw-------. 1 boinc boinc    860160 Oct  7 04:18 result.tar.gz
04:18:14 (1766030): run_atlas exited; CPU time 19333.755716
04:18:14 (1766030): called boinc_finish(0)

</stderr_txt>
]]>

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