Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
15:34:26 (1062851): wrapper (7.7.26015): starting
15:34:26 (1062851): wrapper: running run_atlas (--nthreads 12)
[2025-10-06 15:34:26] Arguments: --nthreads 12
[2025-10-06 15:34:26] Threads: 12
[2025-10-06 15:34:26] Checking for CVMFS
[2025-10-06 15:34:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-06 15:34:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-06 15:34:26] Running cvmfs_config stat atlas.cern.ch
[2025-10-06 15:34:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-06 15:34:26] 2.13.2.0 7258 5966 62404 151410 2 185 4601241 6144000 2751 130560 0 36747195 99.999 198295 228 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-06 15:34:26] CVMFS is ok
[2025-10-06 15:34:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-06 15:34:26] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-06 15:34:26] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-06 15:34:26] Further information can be found at the LHC@home message board.
[2025-10-06 15:34:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-06 15:34:26] Checking for apptainer binary...
[2025-10-06 15:34:26] apptainer is not installed, using version from CVMFS
[2025-10-06 15:34:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-06 15:34:27] XeonFire
[2025-10-06 15:34:27] apptainer works
[2025-10-06 15:34:27] Set ATHENA_PROC_NUMBER=12
[2025-10-06 15:34:27] Set ATHENA_CORE_NUMBER=12
[2025-10-06 15:34:27] Starting ATLAS job with PandaID=6832421586
[2025-10-06 15:34:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-06 16:23:01]  *** The last 200 lines of the pilot log: ***
[2025-10-06 16:23:01]  surl=/var/lib/boinc-client/slots/0/PanDA_Pilot-6832421586/log.46376905._106298.job.log.tgz.1
[2025-10-06 16:23:01]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/71/a3/log.46376905._106298.job.log.tgz.1
[2025-10-06 16:23:01]  workdir=None
[2025-10-06 16:23:01] ]
[2025-10-06 16:23:01] 2025-10-06 21:21:56,360 | INFO     | transferring file log.46376905._106298.job.log.tgz.1 from /var/lib/boinc-client/slots/0/PanDA_Pilot-6832421586/log.46376905._106298.job.log.tgz.1 to /var/lib/boinc
[2025-10-06 16:23:01] 2025-10-06 21:21:56,360 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/0/PanDA_Pilot-6832421586/log.46376905._106298.job.log.tgz.1 /var/lib/boinc-client/slots/0/log.463769
[2025-10-06 16:23:01] 2025-10-06 21:21:56,377 | INFO     | adding to output.list: log.46376905._106298.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/71/a3/log.46376905._106298.job.log.tg
[2025-10-06 16:23:01] 2025-10-06 21:21:56,378 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-06 16:23:01] 2025-10-06 21:21:56,378 | INFO     | summary of transferred files:
[2025-10-06 16:23:01] 2025-10-06 21:21:56,378 | INFO     |  -- lfn=log.46376905._106298.job.log.tgz.1, status_code=0, status=transferred
[2025-10-06 16:23:01] 2025-10-06 21:21:56,378 | INFO     | stage-out finished correctly
[2025-10-06 16:23:01] 2025-10-06 21:21:57,062 | INFO     | time since job start (2826s) is within the limit (172800.0s)
[2025-10-06 16:23:01] 2025-10-06 21:21:57,128 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-06 16:23:01] 2025-10-06 21:21:57,814 | INFO     | job 6832421586 has state=finished
[2025-10-06 16:23:01] 2025-10-06 21:21:57,815 | INFO     | preparing for final server update for job 6832421586 in state='finished'
[2025-10-06 16:23:01] 2025-10-06 21:21:57,815 | INFO     | this job has now completed (state=finished)
[2025-10-06 16:23:01] 2025-10-06 21:21:57,816 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-06 16:23:01] 2025-10-06 21:21:57,816 | INFO     | log transfer has been attempted: DONE
[2025-10-06 16:23:01] 2025-10-06 21:21:57,816 | INFO     | job 6832421586 has finished - writing final server update
[2025-10-06 16:23:01] 2025-10-06 21:21:57,816 | INFO     | total number of processed events: 400 (read)
[2025-10-06 16:23:01] 2025-10-06 21:21:57,818 | INFO     | executing command: lscpu
[2025-10-06 16:23:01] 2025-10-06 21:21:57,887 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-06 16:23:01] 2025-10-06 21:21:59,068 | INFO     | time since job start (2828s) is within the limit (172800.0s)
[2025-10-06 16:23:01] 2025-10-06 21:22:01,070 | INFO     | time since job start (2830s) is within the limit (172800.0s)
[2025-10-06 16:23:01] 2025-10-06 21:22:01,071 | INFO     | 2843s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-06 16:23:01] 2025-10-06 21:22:01,169 | WARNING  | process 1073974 can no longer be monitored (due to stat problems) - aborting
[2025-10-06 16:23:01] 2025-10-06 21:22:01,170 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6832421586/memory_monitor_summary.json (trf name=prmon)
[2025-10-06 16:23:01] 2025-10-06 21:22:01,407 | INFO     | number of running child processes to parent process 1073974: 1
[2025-10-06 16:23:01] 2025-10-06 21:22:01,408 | INFO     | maximum number of monitored processes: 6
[2025-10-06 16:23:01] 2025-10-06 21:22:03,075 | INFO     | time since job start (2832s) is within the limit (172800.0s)
[2025-10-06 16:23:01] 2025-10-06 21:22:03,911 | INFO     | monitor loop #210: job 0:6832421586 is in state 'finished'
[2025-10-06 16:23:01] 2025-10-06 21:22:03,911 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 16:23:01] 2025-10-06 21:22:05,081 | INFO     | time since job start (2834s) is within the limit (172800.0s)
[2025-10-06 16:23:01] 2025-10-06 21:22:06,414 | INFO     | monitor loop #211: job 0:6832421586 is in state 'finished'
[2025-10-06 16:23:01] 2025-10-06 21:22:06,414 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 16:23:01] 2025-10-06 21:22:06,778 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-06 16:23:01] 2025-10-06 21:22:06,793 | INFO     | found 44 cores (22 cores per socket, 2 sockets) HT, CPU MHz: 2081.7177500000003
[2025-10-06 16:23:01] 2025-10-06 21:22:06,808 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6832421586/memory_monitor_summary.json (trf name=prmon)
[2025-10-06 16:23:01] 2025-10-06 21:22:06,809 | INFO     | extracted standard info from prmon json
[2025-10-06 16:23:01] 2025-10-06 21:22:06,809 | INFO     | extracted standard memory fields from prmon json
[2025-10-06 16:23:01] 2025-10-06 21:22:06,809 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-06 16:23:01] 2025-10-06 21:22:06,810 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-06 16:23:01] 2025-10-06 21:22:06,810 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-06 16:23:01] 2025-10-06 21:22:06,811 | INFO     | fitting pss+swap vs Time
[2025-10-06 16:23:01] 2025-10-06 21:22:06,811 | INFO     | sum of square deviations: 18381740.0
[2025-10-06 16:23:01] 2025-10-06 21:22:06,812 | INFO     | sum of deviations: -1120648812.0
[2025-10-06 16:23:01] 2025-10-06 21:22:06,812 | INFO     | mean x: 1759784381.0
[2025-10-06 16:23:01] 2025-10-06 21:22:06,812 | INFO     | mean y: 2788549.282051282
[2025-10-06 16:23:01] 2025-10-06 21:22:06,812 | INFO     | -- intersect: 107288620899.41896
[2025-10-06 16:23:01] 2025-10-06 21:22:06,812 | INFO     | intersect: 107288620899.41896
[2025-10-06 16:23:01] 2025-10-06 21:22:06,812 | INFO     | chi2: 0.00814048786503619
[2025-10-06 16:23:01] 2025-10-06 21:22:06,812 | INFO     | -- intersect: 107288620899.41896
[2025-10-06 16:23:01] 2025-10-06 21:22:06,812 | INFO     | current memory leak: -60.97 B/s (using 39 data points, chi2=0.01)
[2025-10-06 16:23:01] 2025-10-06 21:22:06,813 | INFO     | could have reported an average CPU frequency of 2258 MHz (5 samples)
[2025-10-06 16:23:01] 2025-10-06 21:22:06,813 | INFO     | ..............................
[2025-10-06 16:23:01] 2025-10-06 21:22:06,813 | INFO     | . Timing measurements:
[2025-10-06 16:23:01] 2025-10-06 21:22:06,813 | INFO     | . get job = 0 s
[2025-10-06 16:23:01] 2025-10-06 21:22:06,813 | INFO     | . initial setup = 13 s
[2025-10-06 16:23:01] 2025-10-06 21:22:06,813 | INFO     | . payload setup = 5 s
[2025-10-06 16:23:01] 2025-10-06 21:22:06,814 | INFO     | . stage-in = 0 s
[2025-10-06 16:23:01] 2025-10-06 21:22:06,814 | INFO     | . payload execution = 2798 s
[2025-10-06 16:23:01] 2025-10-06 21:22:06,814 | INFO     | . stage-out = 0 s
[2025-10-06 16:23:01] 2025-10-06 21:22:06,814 | INFO     | . log creation = 0 s
[2025-10-06 16:23:01] 2025-10-06 21:22:06,814 | INFO     | ..............................
[2025-10-06 16:23:01] 2025-10-06 21:22:07,077 | INFO     | 
[2025-10-06 16:23:01] 2025-10-06 21:22:07,077 | INFO     | job summary report
[2025-10-06 16:23:01] 2025-10-06 21:22:07,078 | INFO     | --------------------------------------------------
[2025-10-06 16:23:01] 2025-10-06 21:22:07,078 | INFO     | PanDA job id: 6832421586
[2025-10-06 16:23:01] 2025-10-06 21:22:07,078 | INFO     | task id: 46376905
[2025-10-06 16:23:01] 2025-10-06 21:22:07,078 | INFO     | errors: (none)
[2025-10-06 16:23:01] 2025-10-06 21:22:07,078 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-06 16:23:01] 2025-10-06 21:22:07,078 | INFO     | pilot state: finished 
[2025-10-06 16:23:01] 2025-10-06 21:22:07,078 | INFO     | transexitcode: 0
[2025-10-06 16:23:01] 2025-10-06 21:22:07,078 | INFO     | exeerrorcode: 0
[2025-10-06 16:23:01] 2025-10-06 21:22:07,079 | INFO     | exeerrordiag: 
[2025-10-06 16:23:01] 2025-10-06 21:22:07,079 | INFO     | exitcode: 0
[2025-10-06 16:23:01] 2025-10-06 21:22:07,079 | INFO     | exitmsg: OK
[2025-10-06 16:23:01] 2025-10-06 21:22:07,079 | INFO     | cpuconsumptiontime: 29258 s
[2025-10-06 16:23:01] 2025-10-06 21:22:07,079 | INFO     | nevents: 400
[2025-10-06 16:23:01] 2025-10-06 21:22:07,079 | INFO     | neventsw: 0
[2025-10-06 16:23:01] 2025-10-06 21:22:07,079 | INFO     | pid: 1073974
[2025-10-06 16:23:01] 2025-10-06 21:22:07,079 | INFO     | pgrp: 1073974
[2025-10-06 16:23:01] 2025-10-06 21:22:07,079 | INFO     | corecount: 12
[2025-10-06 16:23:01] 2025-10-06 21:22:07,080 | INFO     | event service: False
[2025-10-06 16:23:01] 2025-10-06 21:22:07,080 | INFO     | sizes: {0: 2348821, 5: 2349083, 11: 2349139, 2808: 2374473, 2809: 2383485, 2810: 2383541, 2820: 2383895}
[2025-10-06 16:23:01] 2025-10-06 21:22:07,080 | INFO     | --------------------------------------------------
[2025-10-06 16:23:01] 2025-10-06 21:22:07,080 | INFO     | 
[2025-10-06 16:23:01] 2025-10-06 21:22:07,080 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-10-06 16:23:01] 2025-10-06 21:22:07,088 | INFO     | time since job start (2836s) is within the limit (172800.0s)
[2025-10-06 16:23:01] 2025-10-06 21:22:07,101 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-06 16:23:01] 2025-10-06 21:22:07,102 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-06 16:23:01] 2025-10-06 21:22:07,102 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-06 16:23:01] 2025-10-06 21:22:07,102 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-06 16:23:01] 2025-10-06 21:22:07,102 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-06 16:23:01] 2025-10-06 21:22:07,102 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-06 16:23:01] 2025-10-06 21:22:07,102 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-06 16:23:01] 2025-10-06 21:22:07,102 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-06 16:23:01] 2025-10-06 21:22:07,102 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-06 16:23:01] 2025-10-06 21:22:07,103 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-06 16:23:01] 2025-10-06 21:22:07,103 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-06 16:23:01] 2025-10-06 21:22:07,103 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-06 16:23:01] 2025-10-06 21:22:07,103 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-06 16:23:01] 2025-10-06 21:22:07,103 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-06 16:23:01] 2025-10-06 21:22:07,103 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-06 16:23:01] 2025-10-06 21:22:07,103 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-06 16:23:01] 2025-10-06 21:22:07,104 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-06 16:23:01] 2025-10-06 21:22:07,104 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-06 16:23:01] 2025-10-06 21:22:07,104 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-06 16:23:01] 2025-10-06 21:22:07,104 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-06 16:23:01] 2025-10-06 21:22:07,104 | INFO     | job 6832421586 has completed (purged errors)
[2025-10-06 16:23:01] 2025-10-06 21:22:07,104 | INFO     | overall cleanup function is called
[2025-10-06 16:23:01] 2025-10-06 21:22:08,113 | INFO     | --- collectZombieJob: --- 10, [1073974]
[2025-10-06 16:23:01] 2025-10-06 21:22:08,113 | INFO     | zombie collector waiting for pid 1073974
[2025-10-06 16:23:01] 2025-10-06 21:22:08,113 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-06 16:23:01] 2025-10-06 21:22:08,113 | INFO     | collected zombie processes
[2025-10-06 16:23:01] 2025-10-06 21:22:08,113 | INFO     | will attempt to kill all subprocesses of pid=1073974
[2025-10-06 16:23:01] 2025-10-06 21:22:08,462 | INFO     | process IDs to be killed: [1073974] (in reverse order)
[2025-10-06 16:23:01] 2025-10-06 21:22:08,566 | WARNING  | found no corresponding commands to process id(s)
[2025-10-06 16:23:01] 2025-10-06 21:22:08,567 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-06 16:23:01] 2025-10-06 21:22:08,584 | INFO     | did not find any defunct processes belonging to 1073974
[2025-10-06 16:23:01] 2025-10-06 21:22:08,593 | INFO     | did not find any defunct processes belonging to 1073974
[2025-10-06 16:23:01] 2025-10-06 21:22:08,593 | INFO     | ready for new job
[2025-10-06 16:23:01] 2025-10-06 21:22:08,593 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-06 16:23:01] 2025-10-06 21:22:08,595 | INFO     | ***************************************
[2025-10-06 16:23:01] 2025-10-06 21:22:08,595 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-06 16:23:01] 2025-10-06 21:22:08,595 | INFO     | ***************************************
[2025-10-06 16:23:01] 2025-10-06 21:22:08,595 | INFO     | 
[2025-10-06 16:23:01] 2025-10-06 21:22:08,598 | INFO     | architecture information:
[2025-10-06 16:23:01] 2025-10-06 21:22:08,599 | INFO     | executing command: cat /etc/os-release
[2025-10-06 16:23:01] 2025-10-06 21:22:08,613 | INFO     | cat /etc/os-release:
[2025-10-06 16:23:01] NAME="CentOS Linux"
[2025-10-06 16:23:01] VERSION="7 (Core)"
[2025-10-06 16:23:01] ID="centos"
[2025-10-06 16:23:01] ID_LIKE="rhel fedora"
[2025-10-06 16:23:01] VERSION_ID="7"
[2025-10-06 16:23:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-06 16:23:01] ANSI_COLOR="0;31"
[2025-10-06 16:23:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-06 16:23:01] HOME_URL="https://www.centos.org/"
[2025-10-06 16:23:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-06 16:23:01] 
[2025-10-06 16:23:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-06 16:23:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-06 16:23:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-06 16:23:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-06 16:23:01] 
[2025-10-06 16:23:01] 2025-10-06 21:22:08,613 | INFO     | ***************************************
[2025-10-06 16:23:01] 2025-10-06 21:22:09,115 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-10-06 16:23:01] 2025-10-06 21:22:09,130 | INFO     | sufficient remaining disk space (1808390946816 B)
[2025-10-06 16:23:01] 2025-10-06 21:22:09,130 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-06 16:23:01] 2025-10-06 21:22:09,131 | INFO     | current server update state: UPDATING_FINAL
[2025-10-06 16:23:01] 2025-10-06 21:22:09,131 | INFO     | update_server=False
[2025-10-06 16:23:01] 2025-10-06 21:22:09,131 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-06 16:23:01] 2025-10-06 21:22:09,447 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-06 16:23:01] 2025-10-06 21:22:09,817 | INFO     | all data control threads have been joined
[2025-10-06 16:23:01] 2025-10-06 21:22:09,911 | INFO     | all payload control threads have been joined
[2025-10-06 16:23:01] 2025-10-06 21:22:09,922 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-06 16:23:01] 2025-10-06 21:22:09,922 | INFO     | aborting loop
[2025-10-06 16:23:01] 2025-10-06 21:22:10,136 | INFO     | [job] retrieve thread has finished
[2025-10-06 16:23:01] 2025-10-06 21:22:10,283 | INFO     | [payload] validate_post thread has finished
[2025-10-06 16:23:01] 2025-10-06 21:22:10,314 | INFO     | all job control threads have been joined
[2025-10-06 16:23:01] 2025-10-06 21:22:10,799 | INFO     | [payload] execute_payloads thread has finished
[2025-10-06 16:23:01] 2025-10-06 21:22:10,823 | INFO     | [data] control thread has finished
[2025-10-06 16:23:01] 2025-10-06 21:22:10,916 | INFO     | [payload] control thread has finished
[2025-10-06 16:23:01] 2025-10-06 21:22:10,928 | INFO     | [job] job monitor thread has finished
[2025-10-06 16:23:01] 2025-10-06 21:22:11,184 | INFO     | [job] validate thread has finished
[2025-10-06 16:23:01] 2025-10-06 21:22:11,201 | INFO     | [payload] failed_post thread has finished
[2025-10-06 16:23:01] 2025-10-06 21:22:11,320 | INFO     | [job] control thread has finished
[2025-10-06 16:23:01] 2025-10-06 21:22:11,342 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-06 16:23:01] 2025-10-06 21:22:11,452 | INFO     | [data] copytool_out thread has finished
[2025-10-06 16:23:01] 2025-10-06 21:22:11,477 | INFO     | [job] create_data_payload thread has finished
[2025-10-06 16:23:01] 2025-10-06 21:22:11,502 | INFO     | [data] copytool_in thread has finished
[2025-10-06 16:23:01] 2025-10-06 21:22:11,582 | INFO     | [payload] validate_pre thread has finished
[2025-10-06 16:23:01] 2025-10-06 21:22:11,928 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-06 16:23:01] 2025-10-06 21:22:12,249 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-06 16:23:01] 2025-10-06 21:22:12,933 | INFO     | [job] queue monitor thread has finished
[2025-10-06 16:23:01] 2025-10-06 21:22:16,254 | INFO     | [data] queue_monitor thread has finished
[2025-10-06 16:23:01] 2025-10-06 21:22:40,667 | INFO     | PID=1066930 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-06 16:23:01] 2025-10-06 21:22:40,668 | INFO     | .. there are 4 such processes running
[2025-10-06 16:23:01] 2025-10-06 21:22:40,668 | INFO     | found 0 job(s) in 20 queues
[2025-10-06 16:23:01] 2025-10-06 21:22:40,668 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-06 16:23:01] 2025-10-06 21:22:40,668 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-06 16:23:01] 2025-10-06 21:22:55,185 | INFO     | [monitor] cgroup control has ended
[2025-10-06 16:23:01] 2025-10-06 21:22:55,740 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139723223156544)>', '<ExcThread(monitor, started 139722827474688)>']
[2025-10-06 16:23:01] 2025-10-06 21:22:56,740 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-06 16:23:01] 2025-10-06 21:22:56,740 | INFO     | [monitor] control thread has ended
[2025-10-06 16:23:01] 2025-10-06 21:23:00,765 | INFO     | all workflow threads have been joined
[2025-10-06 16:23:01] 2025-10-06 21:23:00,765 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-06 16:23:01] 2025-10-06 21:23:00,766 | INFO     | traces error code: 0
[2025-10-06 16:23:01] 2025-10-06 21:23:00,766 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-06 16:23:01] 2025-10-06 21:23:00,857 [wrapper] ==== pilot stdout END ====
[2025-10-06 16:23:01] 2025-10-06 21:23:00,860 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-06 16:23:01] 2025-10-06 21:23:00,862 [wrapper] pilotpid: 1066930
[2025-10-06 16:23:01] 2025-10-06 21:23:00,865 [wrapper] Pilot exit status: 0
[2025-10-06 16:23:01] 2025-10-06 21:23:00,877 [wrapper] pandaids: 6832421586
[2025-10-06 16:23:01] 2025-10-06 21:23:00,949 [wrapper] cleanup supervisor_pilot 1157983 1066931
[2025-10-06 16:23:01] 2025-10-06 21:23:00,952 [wrapper] Test setup, not cleaning
[2025-10-06 16:23:01] 2025-10-06 21:23:00,955 [wrapper] apfmon messages muted
[2025-10-06 16:23:01] 2025-10-06 21:23:00,960 [wrapper] ==== wrapper stdout END ====
[2025-10-06 16:23:01] 2025-10-06 21:23:00,963 [wrapper] ==== wrapper stderr END ====
[2025-10-06 16:23:01]  *** Error codes and diagnostics ***
[2025-10-06 16:23:01]     "exeErrorCode": 0,
[2025-10-06 16:23:01]     "exeErrorDiag": "",
[2025-10-06 16:23:01]     "pilotErrorCode": 0,
[2025-10-06 16:23:01]     "pilotErrorDiag": "",
[2025-10-06 16:23:01]  *** Listing of results directory ***
[2025-10-06 16:23:01] total 392004
[2025-10-06 16:23:01] -rw-r--r-- 1 mark mark    552446 Oct  6 00:28 pilot3.tar.gz
[2025-10-06 16:23:01] -rwx------ 1 mark mark     36292 Oct  6 00:39 runpilot2-wrapper.sh
[2025-10-06 16:23:01] -rw-r--r-- 1 mark mark      5112 Oct  6 00:39 queuedata.json
[2025-10-06 16:23:01] -rw-rw-r-- 1 mark mark       100 Oct  6 15:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-06 16:23:01] -rwxr-xr-x 1 mark mark      7986 Oct  6 15:34 run_atlas
[2025-10-06 16:23:01] -rw-rw-r-- 1 mark mark       105 Oct  6 15:34 job.xml
[2025-10-06 16:23:01] -rw-r--r-- 2 mark mark 212682397 Oct  6 15:34 EVNT.46376901._003937.pool.root.1
[2025-10-06 16:23:01] -rw-r--r-- 2 mark mark     15120 Oct  6 15:34 start_atlas.sh
[2025-10-06 16:23:01] drwxrwx--x 2 mark mark      4096 Oct  6 15:34 shared
[2025-10-06 16:23:01] -rw-r--r-- 2 mark mark    565595 Oct  6 15:34 input.tar.gz
[2025-10-06 16:23:01] -rw-rw-r-- 1 mark mark      9229 Oct  6 15:34 init_data.xml
[2025-10-06 16:23:01] -rw-rw-r-- 1 mark mark         0 Oct  6 15:34 boinc_setup_complete
[2025-10-06 16:23:01] -rw-rw-r-- 1 mark mark         0 Oct  6 15:34 boinc_lockfile
[2025-10-06 16:23:01] -rw-rw-r-- 1 mark mark      2518 Oct  6 15:34 pandaJob.out
[2025-10-06 16:23:01] -rw------- 1 mark mark    975026 Oct  6 15:34 agis_schedconf.cvmfs.json
[2025-10-06 16:23:01] -rw------- 1 mark mark   1560401 Oct  6 15:34 agis_ddmendpoints.agis.ALL.json
[2025-10-06 16:23:01] drwx------ 4 mark mark      4096 Oct  6 15:34 pilot3
[2025-10-06 16:23:01] -rw------- 1 mark mark 183272203 Oct  6 16:21 HITS.46376905._106298.pool.root.1
[2025-10-06 16:23:01] -rw-rw-r-- 1 mark mark       529 Oct  6 16:21 boinc_task_state.xml
[2025-10-06 16:23:01] -rw------- 1 mark mark        95 Oct  6 16:21 pilot_heartbeat.json
[2025-10-06 16:23:01] -rw------- 1 mark mark      1032 Oct  6 16:21 memory_monitor_summary.json
[2025-10-06 16:23:01] -rw------- 1 mark mark    347255 Oct  6 16:21 log.46376905._106298.job.log.tgz.1
[2025-10-06 16:23:01] -rw------- 1 mark mark      7787 Oct  6 16:22 heartbeat.json
[2025-10-06 16:23:01] -rw-rw-r-- 1 mark mark      8192 Oct  6 16:22 boinc_mmap_file
[2025-10-06 16:23:01] -rw-rw-r-- 1 mark mark        27 Oct  6 16:22 wrapper_checkpoint.txt
[2025-10-06 16:23:01] -rw------- 1 mark mark      4832 Oct  6 16:23 pilotlog.txt
[2025-10-06 16:23:01] -rw------- 1 mark mark    436945 Oct  6 16:23 log.46376905._106298.job.log.1
[2025-10-06 16:23:01] -rw------- 1 mark mark       357 Oct  6 16:23 output.list
[2025-10-06 16:23:01] -rw-rw-r-- 1 mark mark       620 Oct  6 16:23 runtime_log
[2025-10-06 16:23:01] -rw------- 1 mark mark    798720 Oct  6 16:23 result.tar.gz
[2025-10-06 16:23:01] -rw-rw-r-- 1 mark mark      8759 Oct  6 16:23 runtime_log.err
[2025-10-06 16:23:01] -rw------- 1 mark mark       645 Oct  6 16:23 I6FODmH7sP8n9Rq4apOajLDm4fhM0noT9bVof3QYDmNcIMDm7RpjRo.diag
[2025-10-06 16:23:01] -rw-rw-r-- 1 mark mark     22421 Oct  6 16:23 stderr.txt
[2025-10-06 16:23:01] HITS file was successfully produced:
[2025-10-06 16:23:01] -rw------- 1 mark mark 183272203 Oct  6 16:21 shared/HITS.pool.root.1
[2025-10-06 16:23:01]  *** Contents of shared directory: ***
[2025-10-06 16:23:01] total 388040
[2025-10-06 16:23:01] -rw-r--r-- 2 mark mark 212682397 Oct  6 15:34 ATLAS.root_0
[2025-10-06 16:23:01] -rw-r--r-- 2 mark mark     15120 Oct  6 15:34 start_atlas.sh
[2025-10-06 16:23:01] -rw-r--r-- 2 mark mark    565595 Oct  6 15:34 input.tar.gz
[2025-10-06 16:23:01] -rw------- 1 mark mark 183272203 Oct  6 16:21 HITS.pool.root.1
[2025-10-06 16:23:01] -rw------- 1 mark mark    798720 Oct  6 16:23 result.tar.gz
16:23:02 (1062851): run_atlas exited; CPU time 29360.140833
16:23:02 (1062851): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN