Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:58:06 (3049840): wrapper (7.7.26015): starting
09:58:06 (3049840): wrapper: running run_atlas (--nthreads 8)
[2025-10-06 09:58:06] Arguments: --nthreads 8
[2025-10-06 09:58:06] Threads: 8
[2025-10-06 09:58:06] Checking for CVMFS
[2025-10-06 09:58:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-06 09:58:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-06 09:58:07] Running cvmfs_config stat atlas.cern.ch
[2025-10-06 09:58:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-06 09:58:08] 2.13.2.0 552491 28457 123520 151399 3 898 23887303 40960000 83191 16776704 0 304724088 99.805 155290874 33836 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-06 09:58:08] CVMFS is ok
[2025-10-06 09:58:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-06 09:58:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-06 09:58:08] Further information can be found at the LHC@home message board.
[2025-10-06 09:58:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-06 09:58:08] Checking for apptainer binary...
[2025-10-06 09:58:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-06 09:58:08] Running /usr/bin/apptainer --version
[2025-10-06 09:58:08] apptainer version 1.4.2-1.el9
[2025-10-06 09:58:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-06 09:58:08] c8-7-5.aglt2.org
[2025-10-06 09:58:08] apptainer works
[2025-10-06 09:58:08] Set ATHENA_PROC_NUMBER=8
[2025-10-06 09:58:08] Set ATHENA_CORE_NUMBER=8
[2025-10-06 09:58:08] Starting ATLAS job with PandaID=6831880650
[2025-10-06 09:58:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-06 11:29:23]  *** The last 200 lines of the pilot log: ***
[2025-10-06 11:29:23] 2025-10-06 15:26:28,978 | INFO     | .. there are 80 such processes running
[2025-10-06 11:29:23] 2025-10-06 15:26:29,980 | INFO     | time since job start (5251s) is within the limit (172800.0s)
[2025-10-06 11:29:23] 2025-10-06 15:26:30,608 | INFO     | monitor loop #343: job 0:6831880650 is in state 'finished'
[2025-10-06 11:29:23] 2025-10-06 15:26:30,608 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 11:29:23] 2025-10-06 15:26:31,987 | INFO     | time since job start (5253s) is within the limit (172800.0s)
[2025-10-06 11:29:23] 2025-10-06 15:26:33,116 | INFO     | monitor loop #344: job 0:6831880650 is in state 'finished'
[2025-10-06 11:29:23] 2025-10-06 15:26:33,116 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 11:29:23] 2025-10-06 15:26:33,994 | INFO     | time since job start (5255s) is within the limit (172800.0s)
[2025-10-06 11:29:23] 2025-10-06 15:26:33,994 | INFO     | 5259s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-06 11:29:23] 2025-10-06 15:26:35,621 | INFO     | monitor loop #345: job 0:6831880650 is in state 'finished'
[2025-10-06 11:29:23] 2025-10-06 15:26:35,621 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 11:29:23] 2025-10-06 15:26:36,001 | INFO     | time since job start (5258s) is within the limit (172800.0s)
[2025-10-06 11:29:23] 2025-10-06 15:26:38,024 | INFO     | time since job start (5260s) is within the limit (172800.0s)
[2025-10-06 11:29:23] 2025-10-06 15:26:38,126 | INFO     | monitor loop #346: job 0:6831880650 is in state 'finished'
[2025-10-06 11:29:23] 2025-10-06 15:26:38,126 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 11:29:23] 2025-10-06 15:26:40,035 | INFO     | time since job start (5262s) is within the limit (172800.0s)
[2025-10-06 11:29:23] 2025-10-06 15:26:40,631 | INFO     | monitor loop #347: job 0:6831880650 is in state 'finished'
[2025-10-06 11:29:23] 2025-10-06 15:26:40,631 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 11:29:23] 2025-10-06 15:26:42,045 | INFO     | time since job start (5264s) is within the limit (172800.0s)
[2025-10-06 11:29:23] 2025-10-06 15:26:43,148 | INFO     | monitor loop #348: job 0:6831880650 is in state 'finished'
[2025-10-06 11:29:23] 2025-10-06 15:26:43,148 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 11:29:23] 2025-10-06 15:26:44,070 | INFO     | time since job start (5266s) is within the limit (172800.0s)
[2025-10-06 11:29:23] 2025-10-06 15:26:45,653 | INFO     | monitor loop #349: job 0:6831880650 is in state 'finished'
[2025-10-06 11:29:23] 2025-10-06 15:26:45,653 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 11:29:23] 2025-10-06 15:26:46,077 | INFO     | time since job start (5268s) is within the limit (172800.0s)
[2025-10-06 11:29:23] 2025-10-06 15:26:48,094 | INFO     | time since job start (5270s) is within the limit (172800.0s)
[2025-10-06 11:29:23] 2025-10-06 15:26:48,164 | INFO     | monitor loop #350: job 0:6831880650 is in state 'finished'
[2025-10-06 11:29:23] 2025-10-06 15:26:48,164 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 11:29:23] 2025-10-06 15:26:50,100 | INFO     | time since job start (5272s) is within the limit (172800.0s)
[2025-10-06 11:29:23] 2025-10-06 15:26:50,674 | INFO     | monitor loop #351: job 0:6831880650 is in state 'finished'
[2025-10-06 11:29:23] 2025-10-06 15:26:50,674 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 11:29:23] 2025-10-06 15:26:50,741 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-06 11:29:23] 2025-10-06 15:26:50,747 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9924218750075
[2025-10-06 11:29:23] 2025-10-06 15:26:50,796 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6831880650/memory_monitor_summary.json (trf name=prmon)
[2025-10-06 11:29:23] 2025-10-06 15:26:50,802 | INFO     | extracted standard info from prmon json
[2025-10-06 11:29:23] 2025-10-06 15:26:50,802 | INFO     | extracted standard memory fields from prmon json
[2025-10-06 11:29:23] 2025-10-06 15:26:50,802 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-06 11:29:23] 2025-10-06 15:26:50,802 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-06 11:29:23] 2025-10-06 15:26:50,802 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-06 11:29:23] 2025-10-06 15:26:50,803 | INFO     | fitting pss+swap vs Time
[2025-10-06 11:29:23] 2025-10-06 15:26:50,803 | INFO     | sum of square deviations: 141535008.8831167
[2025-10-06 11:29:23] 2025-10-06 15:26:50,804 | INFO     | sum of deviations: 4035118957.8181815
[2025-10-06 11:29:23] 2025-10-06 15:26:50,804 | INFO     | mean x: 1759761919.038961
[2025-10-06 11:29:23] 2025-10-06 15:26:50,804 | INFO     | mean y: 2282042.727272727
[2025-10-06 11:29:23] 2025-10-06 15:26:50,804 | INFO     | -- intersect: -50167981390.99803
[2025-10-06 11:29:23] 2025-10-06 15:26:50,804 | INFO     | intersect: -50167981390.99803
[2025-10-06 11:29:23] 2025-10-06 15:26:50,804 | INFO     | chi2: 0.10216889863912294
[2025-10-06 11:29:23] 2025-10-06 15:26:50,804 | INFO     | -- intersect: -50167981390.99803
[2025-10-06 11:29:23] 2025-10-06 15:26:50,804 | INFO     | current memory leak: 28.51 B/s (using 77 data points, chi2=0.10)
[2025-10-06 11:29:23] 2025-10-06 15:26:50,804 | INFO     | could have reported an average CPU frequency of 3799 MHz (6 samples)
[2025-10-06 11:29:23] 2025-10-06 15:26:50,804 | INFO     | ..............................
[2025-10-06 11:29:23] 2025-10-06 15:26:50,804 | INFO     | . Timing measurements:
[2025-10-06 11:29:23] 2025-10-06 15:26:50,804 | INFO     | . get job = 0 s
[2025-10-06 11:29:23] 2025-10-06 15:26:50,804 | INFO     | . initial setup = 3 s
[2025-10-06 11:29:23] 2025-10-06 15:26:50,804 | INFO     | . payload setup = 53 s
[2025-10-06 11:29:23] 2025-10-06 15:26:50,804 | INFO     | . stage-in = 0 s
[2025-10-06 11:29:23] 2025-10-06 15:26:50,804 | INFO     | . payload execution = 5120 s
[2025-10-06 11:29:23] 2025-10-06 15:26:50,805 | INFO     | . stage-out = 2 s
[2025-10-06 11:29:23] 2025-10-06 15:26:50,805 | INFO     | . log creation = 0 s
[2025-10-06 11:29:23] 2025-10-06 15:26:50,805 | INFO     | ..............................
[2025-10-06 11:29:23] 2025-10-06 15:26:51,382 | INFO     | 
[2025-10-06 11:29:23] 2025-10-06 15:26:51,382 | INFO     | job summary report
[2025-10-06 11:29:23] 2025-10-06 15:26:51,382 | INFO     | --------------------------------------------------
[2025-10-06 11:29:23] 2025-10-06 15:26:51,382 | INFO     | PanDA job id: 6831880650
[2025-10-06 11:29:23] 2025-10-06 15:26:51,382 | INFO     | task id: 46376905
[2025-10-06 11:29:23] 2025-10-06 15:26:51,382 | INFO     | errors: (none)
[2025-10-06 11:29:23] 2025-10-06 15:26:51,382 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-06 11:29:23] 2025-10-06 15:26:51,382 | INFO     | pilot state: finished 
[2025-10-06 11:29:23] 2025-10-06 15:26:51,382 | INFO     | transexitcode: 0
[2025-10-06 11:29:23] 2025-10-06 15:26:51,382 | INFO     | exeerrorcode: 0
[2025-10-06 11:29:23] 2025-10-06 15:26:51,382 | INFO     | exeerrordiag: 
[2025-10-06 11:29:23] 2025-10-06 15:26:51,382 | INFO     | exitcode: 0
[2025-10-06 11:29:23] 2025-10-06 15:26:51,382 | INFO     | exitmsg: OK
[2025-10-06 11:29:23] 2025-10-06 15:26:51,382 | INFO     | cpuconsumptiontime: 21054 s
[2025-10-06 11:29:23] 2025-10-06 15:26:51,382 | INFO     | nevents: 400
[2025-10-06 11:29:23] 2025-10-06 15:26:51,382 | INFO     | neventsw: 0
[2025-10-06 11:29:23] 2025-10-06 15:26:51,382 | INFO     | pid: 3133834
[2025-10-06 11:29:23] 2025-10-06 15:26:51,383 | INFO     | pgrp: 3133834
[2025-10-06 11:29:23] 2025-10-06 15:26:51,383 | INFO     | corecount: 8
[2025-10-06 11:29:23] 2025-10-06 15:26:51,383 | INFO     | event service: False
[2025-10-06 11:29:23] 2025-10-06 15:26:51,383 | INFO     | sizes: {0: 2348643, 1: 2348842, 12: 2348842, 23: 2348870, 25: 2349160, 33: 2349188, 5178: 2375639, 5181: 2384693, 5209: 2384831}
[2025-10-06 11:29:23] 2025-10-06 15:26:51,383 | INFO     | --------------------------------------------------
[2025-10-06 11:29:23] 2025-10-06 15:26:51,383 | INFO     | 
[2025-10-06 11:29:23] 2025-10-06 15:26:51,383 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-10-06 11:29:23] 2025-10-06 15:26:51,641 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-06 11:29:23] 2025-10-06 15:26:51,642 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-06 11:29:23] 2025-10-06 15:26:51,642 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-06 11:29:23] 2025-10-06 15:26:51,642 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-06 11:29:23] 2025-10-06 15:26:51,642 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-06 11:29:23] 2025-10-06 15:26:51,642 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-06 11:29:23] 2025-10-06 15:26:51,642 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-06 11:29:23] 2025-10-06 15:26:51,642 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-06 11:29:23] 2025-10-06 15:26:51,642 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-06 11:29:23] 2025-10-06 15:26:51,678 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-06 11:29:23] 2025-10-06 15:26:51,678 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-06 11:29:23] 2025-10-06 15:26:51,678 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-06 11:29:23] 2025-10-06 15:26:51,678 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-06 11:29:23] 2025-10-06 15:26:51,678 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-06 11:29:23] 2025-10-06 15:26:51,678 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-06 11:29:23] 2025-10-06 15:26:51,678 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-06 11:29:23] 2025-10-06 15:26:51,678 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-06 11:29:23] 2025-10-06 15:26:51,678 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-06 11:29:23] 2025-10-06 15:26:51,679 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-06 11:29:23] 2025-10-06 15:26:51,679 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-06 11:29:23] 2025-10-06 15:26:51,679 | INFO     | job 6831880650 has completed (purged errors)
[2025-10-06 11:29:23] 2025-10-06 15:26:51,679 | INFO     | overall cleanup function is called
[2025-10-06 11:29:23] 2025-10-06 15:26:52,700 | INFO     | --- collectZombieJob: --- 10, [3133834]
[2025-10-06 11:29:23] 2025-10-06 15:26:52,700 | INFO     | zombie collector waiting for pid 3133834
[2025-10-06 11:29:23] 2025-10-06 15:26:52,700 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-06 11:29:23] 2025-10-06 15:26:52,700 | INFO     | collected zombie processes
[2025-10-06 11:29:23] 2025-10-06 15:26:52,700 | INFO     | will attempt to kill all subprocesses of pid=3133834
[2025-10-06 11:29:23] 2025-10-06 15:26:55,597 | INFO     | PID=3067650 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-06 11:29:23] 2025-10-06 15:26:55,598 | INFO     | .. there are 81 such processes running
[2025-10-06 11:29:23] 2025-10-06 15:26:56,886 | INFO     | process IDs to be killed: [3133834] (in reverse order)
[2025-10-06 11:29:23] 2025-10-06 15:26:57,122 | WARNING  | found no corresponding commands to process id(s)
[2025-10-06 11:29:23] 2025-10-06 15:26:57,122 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-06 11:29:23] 2025-10-06 15:26:57,221 | INFO     | did not find any defunct processes belonging to 3133834
[2025-10-06 11:29:23] 2025-10-06 15:26:57,259 | INFO     | did not find any defunct processes belonging to 3133834
[2025-10-06 11:29:23] 2025-10-06 15:26:57,259 | INFO     | ready for new job
[2025-10-06 11:29:23] 2025-10-06 15:26:57,259 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-06 11:29:23] 2025-10-06 15:26:57,261 | INFO     | ***************************************
[2025-10-06 11:29:23] 2025-10-06 15:26:57,261 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-06 11:29:23] 2025-10-06 15:26:57,261 | INFO     | ***************************************
[2025-10-06 11:29:23] 2025-10-06 15:26:57,261 | INFO     | 
[2025-10-06 11:29:23] 2025-10-06 15:26:57,266 | INFO     | architecture information:
[2025-10-06 11:29:23] 2025-10-06 15:26:57,268 | INFO     | executing command: cat /etc/os-release
[2025-10-06 11:29:23] 2025-10-06 15:26:57,393 | INFO     | cat /etc/os-release:
[2025-10-06 11:29:23] NAME="CentOS Linux"
[2025-10-06 11:29:23] VERSION="7 (Core)"
[2025-10-06 11:29:23] ID="centos"
[2025-10-06 11:29:23] ID_LIKE="rhel fedora"
[2025-10-06 11:29:23] VERSION_ID="7"
[2025-10-06 11:29:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-06 11:29:23] ANSI_COLOR="0;31"
[2025-10-06 11:29:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-06 11:29:23] HOME_URL="https://www.centos.org/"
[2025-10-06 11:29:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-06 11:29:23] 
[2025-10-06 11:29:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-06 11:29:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-06 11:29:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-06 11:29:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-06 11:29:23] 
[2025-10-06 11:29:23] 2025-10-06 15:26:57,394 | INFO     | ***************************************
[2025-10-06 11:29:23] 2025-10-06 15:26:57,903 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-10-06 11:29:23] 2025-10-06 15:26:57,946 | INFO     | sufficient remaining disk space (169606119424 B)
[2025-10-06 11:29:23] 2025-10-06 15:26:57,947 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-06 11:29:23] 2025-10-06 15:26:57,947 | INFO     | current server update state: UPDATING_FINAL
[2025-10-06 11:29:23] 2025-10-06 15:26:57,947 | INFO     | update_server=False
[2025-10-06 11:29:23] 2025-10-06 15:26:57,947 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-06 11:29:23] 2025-10-06 15:26:58,297 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-06 11:29:23] 2025-10-06 15:26:58,297 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-06 11:29:23] 2025-10-06 15:26:58,298 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-06 11:29:23] 2025-10-06 15:26:58,298 | INFO     | will abort loop
[2025-10-06 11:29:23] 2025-10-06 15:26:58,580 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-06 11:29:23] 2025-10-06 15:26:58,846 | INFO     | all data control threads have been joined
[2025-10-06 11:29:23] 2025-10-06 15:26:58,953 | INFO     | [job] retrieve thread has finished
[2025-10-06 11:29:23] 2025-10-06 15:26:59,183 | INFO     | [data] copytool_in thread has finished
[2025-10-06 11:29:23] 2025-10-06 15:26:59,233 | INFO     | all payload control threads have been joined
[2025-10-06 11:29:23] 2025-10-06 15:26:59,304 | INFO     | [job] job monitor thread has finished
[2025-10-06 11:29:23] 2025-10-06 15:26:59,595 | INFO     | [job] validate thread has finished
[2025-10-06 11:29:23] 2025-10-06 15:26:59,670 | INFO     | all job control threads have been joined
[2025-10-06 11:29:23] 2025-10-06 15:26:59,744 | INFO     | [job] create_data_payload thread has finished
[2025-10-06 11:29:23] 2025-10-06 15:26:59,848 | INFO     | [payload] validate_post thread has finished
[2025-10-06 11:29:23] 2025-10-06 15:26:59,852 | INFO     | [data] control thread has finished
[2025-10-06 11:29:23] 2025-10-06 15:27:00,222 | INFO     | [payload] execute_payloads thread has finished
[2025-10-06 11:29:23] 2025-10-06 15:27:00,235 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-06 11:29:23] 2025-10-06 15:27:00,239 | INFO     | [payload] control thread has finished
[2025-10-06 11:29:23] 2025-10-06 15:27:00,257 | INFO     | [payload] validate_pre thread has finished
[2025-10-06 11:29:23] 2025-10-06 15:27:00,413 | INFO     | [payload] failed_post thread has finished
[2025-10-06 11:29:23] 2025-10-06 15:27:00,593 | INFO     | [data] copytool_out thread has finished
[2025-10-06 11:29:23] 2025-10-06 15:27:00,662 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-06 11:29:23] 2025-10-06 15:27:00,697 | INFO     | [job] control thread has finished
[2025-10-06 11:29:23] 2025-10-06 15:27:01,241 | INFO     | [job] queue monitor thread has finished
[2025-10-06 11:29:23] 2025-10-06 15:27:04,671 | INFO     | [data] queue_monitor thread has finished
[2025-10-06 11:29:23] 2025-10-06 15:27:06,752 | INFO     | [monitor] cgroup control has ended
[2025-10-06 11:29:23] 2025-10-06 15:27:08,676 | INFO     | job.realtimelogging is not enabled
[2025-10-06 11:29:23] 2025-10-06 15:27:09,682 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-06 11:29:23] 2025-10-06 15:27:10,269 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139810562594624)>', '<ExcThread(monitor, started 139809775417088)>']
[2025-10-06 11:29:23] 2025-10-06 15:27:15,295 | INFO     | all workflow threads have been joined
[2025-10-06 11:29:23] 2025-10-06 15:27:15,295 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-06 11:29:23] 2025-10-06 15:27:15,295 | INFO     | traces error code: 0
[2025-10-06 11:29:23] 2025-10-06 15:27:15,296 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-06 11:29:23] 2025-10-06 15:27:30,646 | INFO     | PID=3067650 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-06 11:29:23] 2025-10-06 15:27:30,646 | INFO     | .. there are 81 such processes running
[2025-10-06 11:29:23] 2025-10-06 15:27:30,646 | INFO     | found 0 job(s) in 20 queues
[2025-10-06 11:29:23] 2025-10-06 15:27:30,646 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-06 11:29:23] 2025-10-06 15:27:30,646 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-06 11:29:23] 2025-10-06 15:27:30,646 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-06 11:29:23] 2025-10-06 15:27:30,646 | INFO     | [monitor] control thread has ended
[2025-10-06 11:29:23] 2025-10-06 15:27:31,073 [wrapper] ==== pilot stdout END ====
[2025-10-06 11:29:23] 2025-10-06 15:27:31,111 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-06 11:29:23] 2025-10-06 15:27:31,138 [wrapper] pilotpid: 3067650
[2025-10-06 11:29:23] 2025-10-06 15:27:31,181 [wrapper] Pilot exit status: 0
[2025-10-06 11:29:23] 2025-10-06 15:27:31,285 [wrapper] pandaids: 6831880650
[2025-10-06 11:29:23] 2025-10-06 15:27:31,552 [wrapper] cleanup supervisor_pilot 4103711 3067651
[2025-10-06 11:29:23] 2025-10-06 15:27:31,605 [wrapper] Test setup, not cleaning
[2025-10-06 11:29:23] 2025-10-06 15:27:31,631 [wrapper] apfmon messages muted
[2025-10-06 11:29:23] 2025-10-06 15:27:31,669 [wrapper] ==== wrapper stdout END ====
[2025-10-06 11:29:23] 2025-10-06 15:27:31,738 [wrapper] ==== wrapper stderr END ====
[2025-10-06 11:29:23]  *** Error codes and diagnostics ***
[2025-10-06 11:29:23]     "exeErrorCode": 0,
[2025-10-06 11:29:23]     "exeErrorDiag": "",
[2025-10-06 11:29:23]     "pilotErrorCode": 0,
[2025-10-06 11:29:23]     "pilotErrorDiag": "",
[2025-10-06 11:29:23]  *** Listing of results directory ***
[2025-10-06 11:29:23] total 391800
[2025-10-06 11:29:23] -rw-r--r--. 1 boincer umatlas    552446 Oct  5 14:48 pilot3.tar.gz
[2025-10-06 11:29:23] -rw-r--r--. 1 boincer umatlas      5112 Oct  5 14:59 queuedata.json
[2025-10-06 11:29:23] -rwx------. 1 boincer umatlas     36292 Oct  5 15:00 runpilot2-wrapper.sh
[2025-10-06 11:29:23] -rw-r--r--. 1 boincer umatlas       100 Oct  6 09:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-06 11:29:23] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  6 09:58 run_atlas
[2025-10-06 11:29:23] -rw-r--r--. 1 boincer umatlas       105 Oct  6 09:58 job.xml
[2025-10-06 11:29:23] -rw-r--r--. 2 boincer umatlas 217507430 Oct  6 09:58 EVNT.46376901._003433.pool.root.1
[2025-10-06 11:29:23] -rw-r--r--. 2 boincer umatlas     15120 Oct  6 09:58 start_atlas.sh
[2025-10-06 11:29:23] drwxrwx--x. 2 boincer umatlas      4096 Oct  6 09:58 shared
[2025-10-06 11:29:23] -rw-r--r--. 2 boincer umatlas    565602 Oct  6 09:58 input.tar.gz
[2025-10-06 11:29:23] -rw-r--r--. 1 boincer umatlas         0 Oct  6 09:58 boinc_lockfile
[2025-10-06 11:29:23] -rw-r--r--. 1 boincer umatlas      2518 Oct  6 09:58 pandaJob.out
[2025-10-06 11:29:23] -rw-------. 1 boincer umatlas    975002 Oct  6 09:58 agis_schedconf.cvmfs.json
[2025-10-06 11:29:23] -rw-------. 1 boincer umatlas   1560401 Oct  6 09:58 agis_ddmendpoints.agis.ALL.json
[2025-10-06 11:29:23] drwx------. 4 boincer umatlas      4096 Oct  6 09:58 pilot3
[2025-10-06 11:29:23] -rw-------. 1 boincer umatlas 177806619 Oct  6 11:25 HITS.46376905._093193.pool.root.1
[2025-10-06 11:29:23] -rw-r--r--. 1 boincer umatlas       529 Oct  6 11:25 boinc_task_state.xml
[2025-10-06 11:29:23] -rw-------. 1 boincer umatlas      1049 Oct  6 11:26 memory_monitor_summary.json
[2025-10-06 11:29:23] -rw-------. 1 boincer umatlas    316942 Oct  6 11:26 log.46376905._093193.job.log.tgz.1
[2025-10-06 11:29:23] -rw-------. 1 boincer umatlas        95 Oct  6 11:26 pilot_heartbeat.json
[2025-10-06 11:29:23] -rw-------. 1 boincer umatlas      7799 Oct  6 11:26 heartbeat.json
[2025-10-06 11:29:23] -rw-------. 1 boincer umatlas       823 Oct  6 11:27 pilotlog.txt
[2025-10-06 11:29:23] -rw-------. 1 boincer umatlas    686791 Oct  6 11:27 log.46376905._093193.job.log.1
[2025-10-06 11:29:23] -rw-------. 1 boincer umatlas       357 Oct  6 11:27 output.list
[2025-10-06 11:29:23] -rw-r--r--. 1 boincer umatlas       620 Oct  6 11:27 runtime_log
[2025-10-06 11:29:23] -rw-------. 1 boincer umatlas   1024000 Oct  6 11:27 result.tar.gz
[2025-10-06 11:29:23] -rw-r--r--. 1 boincer umatlas      8693 Oct  6 11:27 runtime_log.err
[2025-10-06 11:29:23] -rw-------. 1 boincer umatlas       655 Oct  6 11:27 pniNDmc9iP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmLiQNDmRn150n.diag
[2025-10-06 11:29:23] -rw-r--r--. 1 boincer umatlas      7162 Oct  6 11:29 init_data.xml
[2025-10-06 11:29:23] -rw-r--r--. 1 boincer umatlas      8192 Oct  6 11:29 boinc_mmap_file
[2025-10-06 11:29:23] -rw-r--r--. 1 boincer umatlas        27 Oct  6 11:29 wrapper_checkpoint.txt
[2025-10-06 11:29:23] -rw-r--r--. 1 boincer umatlas     22273 Oct  6 11:29 stderr.txt
[2025-10-06 11:29:23] HITS file was successfully produced:
[2025-10-06 11:29:23] -rw-------. 1 boincer umatlas 177806619 Oct  6 11:25 shared/HITS.pool.root.1
[2025-10-06 11:29:23]  *** Contents of shared directory: ***
[2025-10-06 11:29:23] total 387628
[2025-10-06 11:29:23] -rw-r--r--. 2 boincer umatlas 217507430 Oct  6 09:58 ATLAS.root_0
[2025-10-06 11:29:23] -rw-r--r--. 2 boincer umatlas     15120 Oct  6 09:58 start_atlas.sh
[2025-10-06 11:29:23] -rw-r--r--. 2 boincer umatlas    565602 Oct  6 09:58 input.tar.gz
[2025-10-06 11:29:23] -rw-------. 1 boincer umatlas 177806619 Oct  6 11:25 HITS.pool.root.1
[2025-10-06 11:29:23] -rw-------. 1 boincer umatlas   1024000 Oct  6 11:27 result.tar.gz
11:29:25 (3049840): run_atlas exited; CPU time 21247.087013
11:29:25 (3049840): called boinc_finish(0)

</stderr_txt>
]]>

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