Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:56:15 (2035661): wrapper (7.7.26015): starting
05:56:15 (2035661): wrapper: running run_atlas (--nthreads 8)
[2025-10-06 05:56:15] Arguments: --nthreads 8
[2025-10-06 05:56:15] Threads: 8
[2025-10-06 05:56:15] Checking for CVMFS
[2025-10-06 05:56:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-06 05:56:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-06 05:56:17] Running cvmfs_config stat atlas.cern.ch
[2025-10-06 05:56:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-06 05:56:18] 2.11.3.0 4007 22879 165408 151398 1 99 45519873 45568000 18288 130560 0 113685373 99.828 57548485 26253 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-10-06 05:56:18] CVMFS is ok
[2025-10-06 05:56:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-06 05:56:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-06 05:56:18] Further information can be found at the LHC@home message board.
[2025-10-06 05:56:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-06 05:56:18] Checking for apptainer binary...
[2025-10-06 05:56:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-06 05:56:18] Running /usr/bin/apptainer --version
[2025-10-06 05:56:18] apptainer version 1.4.1-1.el9
[2025-10-06 05:56:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-06 05:56:18] wns0017.triumf.lcg
[2025-10-06 05:56:18] apptainer works
[2025-10-06 05:56:18] Set ATHENA_PROC_NUMBER=8
[2025-10-06 05:56:18] Set ATHENA_CORE_NUMBER=8
[2025-10-06 05:56:18] Starting ATLAS job with PandaID=6832634376
[2025-10-06 05:56:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-06 06:04:20]  *** The last 200 lines of the pilot log: ***
[2025-10-06 06:04:20] 2025-10-06 13:03:42,077 | INFO     | ..............................
[2025-10-06 06:04:20] 2025-10-06 13:03:42,077 | INFO     | . Timing measurements:
[2025-10-06 06:04:20] 2025-10-06 13:03:42,078 | INFO     | . get job = 0 s
[2025-10-06 06:04:20] 2025-10-06 13:03:42,078 | INFO     | . initial setup = 8 s
[2025-10-06 06:04:20] 2025-10-06 13:03:42,078 | INFO     | . payload setup = 54 s
[2025-10-06 06:04:20] 2025-10-06 13:03:42,078 | INFO     | . stage-in = 0 s
[2025-10-06 06:04:20] 2025-10-06 13:03:42,078 | INFO     | . payload execution = 120 s
[2025-10-06 06:04:20] 2025-10-06 13:03:42,078 | INFO     | . stage-out = 1 s
[2025-10-06 06:04:20] 2025-10-06 13:03:42,222 | INFO     | . log creation = 0 s
[2025-10-06 06:04:20] 2025-10-06 13:03:42,222 | INFO     | ..............................
[2025-10-06 06:04:20] 2025-10-06 13:03:42,222 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-06 06:04:20] 2025-10-06 13:03:42,223 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6832634376/pilotlog.txt
[2025-10-06 06:04:20] 2025-10-06 13:03:42,397 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-06 06:04:20] - Log from pilotlog.txt -
[2025-10-06 06:04:20] 2025-10-06 13:03:42,075 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6832634376/memory_monitor_summary.json (trf name=prmon)
[2025-10-06 06:04:20] 2025-10-06 13:03:42,076 | INFO     | extracted standard info from prmon json
[2025-10-06 06:04:20] 2025-10-06 13:03:42,076 | INFO     | extracted standard memory fields from prmon json
[2025-10-06 06:04:20] 2025-10-06 13:03:42,076 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-06 06:04:20] 2025-10-06 13:03:42,076 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-06 06:04:20] 2025-10-06 13:03:42,077 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-06 06:04:20] 2025-10-06 13:03:42,077 | WARNING  | wrong length of table data, x=[1759755597.0, 1759755658.0], y=[1464.0, 469907.0] (must be same and length>=4)
[2025-10-06 06:04:20] 2025-10-06 13:03:42,077 | INFO     | could have reported an average CPU frequency of 2094 MHz (4 samples)
[2025-10-06 06:04:20] 2025-10-06 13:03:42,077 | INFO     | ..............................
[2025-10-06 06:04:20] 2025-10-06 13:03:42,077 | INFO     | . Timing measurements:
[2025-10-06 06:04:20] 2025-10-06 13:03:42,078 | INFO     | . get job = 0 s
[2025-10-06 06:04:20] 2025-10-06 13:03:42,078 | INFO     | . initial setup = 8 s
[2025-10-06 06:04:20] 2025-10-06 13:03:42,078 | INFO     | . payload setup = 54 s
[2025-10-06 06:04:20] 2025-10-06 13:03:42,078 | INFO     | . stage-in = 0 s
[2025-10-06 06:04:20] 2025-10-06 13:03:42,078 | INFO     | . payload execution = 120 s
[2025-10-06 06:04:20] 2025-10-06 13:03:42,078 | INFO     | . stage-out = 1 s
[2025-10-06 06:04:20] 2025-10-06 13:03:42,222 | INFO     | . log creation = 0 s
[2025-10-06 06:04:20] 2025-10-06 13:03:42,222 | INFO     | ..............................
[2025-10-06 06:04:20] 2025-10-06 13:03:42,222 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-06 06:04:20] 2025-10-06 13:03:42,223 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6832634376/pilotlog.txt
[2025-10-06 06:04:20] 2025-10-06 13:03:42,398 | WARNING  | 
[2025-10-06 06:04:20] [begin log extracts]
[2025-10-06 06:04:20] - Log from pilotlog.txt -
[2025-10-06 06:04:20] 2025-10-06 13:03:42,075 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6832634376/memory_monitor_summary.json (trf name=prmon)
[2025-10-06 06:04:20] 2025-10-06 13:03:42,076 | INFO     | extracted standard info from prmon json
[2025-10-06 06:04:20] 2025-10-06 13:03:42,076 | INFO     | extracted standard memory fields from prmon json
[2025-10-06 06:04:20] 2025-10-06 13:03:42,076 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-06 06:04:20] 2025-10-06 13:03:42,076 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-06 06:04:20] 2025-10-06 13:03:42,077 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-06 06:04:20] 2025-10-06 13:03:42,077 | WARNING  | wrong length of table data, x=[1759755597.0, 1759755658.0], y=[1464.0, 469907.0] (must be same and length>=4)
[2025-10-06 06:04:20] 2025-10-06 13:03:42,077 | INFO     | could have reported an average CPU frequency of 2094 MHz (4 samples)
[2025-10-06 06:04:20] 2025-10-06 13:03:42,077 | INFO     | ..............................
[2025-10-06 06:04:20] 2025-10-06 13:03:42,077 | INFO     | . Timing measurements:
[2025-10-06 06:04:20] 2025-10-06 13:03:42,078 | INFO     | . get job = 0 s
[2025-10-06 06:04:20] 2025-10-06 13:03:42,078 | INFO     | . initial setup = 8 s
[2025-10-06 06:04:20] 2025-10-06 13:03:42,078 | INFO     | . payload setup = 54 s
[2025-10-06 06:04:20] 2025-10-06 13:03:42,078 | INFO     | . stage-in = 0 s
[2025-10-06 06:04:20] 2025-10-06 13:03:42,078 | INFO     | . payload execution = 120 s
[2025-10-06 06:04:20] 2025-10-06 13:03:42,078 | INFO     | . stage-out = 1 s
[2025-10-06 06:04:20] 2025-10-06 13:03:42,222 | INFO     | . log creation = 0 s
[2025-10-06 06:04:20] 2025-10-06 13:03:42,222 | INFO     | ..............................
[2025-10-06 06:04:20] 2025-10-06 13:03:42,222 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-06 06:04:20] 2025-10-06 13:03:42,223 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6832634376/pilotlog.txt
[2025-10-06 06:04:20] [end log extracts]
[2025-10-06 06:04:20] 2025-10-06 13:03:42,398 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-06 06:04:20] 2025-10-06 13:03:42,399 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-10-06 06:04:20] 2025-10-06 13:03:43,059 | INFO     | 
[2025-10-06 06:04:20] 2025-10-06 13:03:43,061 | INFO     | job summary report
[2025-10-06 06:04:20] 2025-10-06 13:03:43,062 | INFO     | --------------------------------------------------
[2025-10-06 06:04:20] 2025-10-06 13:03:43,062 | INFO     | PanDA job id: 6832634376
[2025-10-06 06:04:20] 2025-10-06 13:03:43,062 | INFO     | task id: 46376905
[2025-10-06 06:04:20] 2025-10-06 13:03:43,062 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-06 06:00:56,627 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-06 06:04:20] 2025-10-06 13:03:43,062 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-06 06:04:20] 2025-10-06 13:03:43,062 | INFO     | pilot state: failed 
[2025-10-06 06:04:20] 2025-10-06 13:03:43,062 | INFO     | transexitcode: 65
[2025-10-06 06:04:20] 2025-10-06 13:03:43,062 | INFO     | exeerrorcode: 65
[2025-10-06 06:04:20] 2025-10-06 13:03:43,062 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-10-06 06:04:20] 2025-10-06 13:03:43,062 | INFO     | exitcode: 65
[2025-10-06 06:04:20] 2025-10-06 13:03:43,062 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-10-06 06:04:20] 2025-10-06 13:03:43,062 | INFO     | cpuconsumptiontime: 20 s
[2025-10-06 06:04:20] 2025-10-06 13:03:43,062 | INFO     | nevents: 0
[2025-10-06 06:04:20] 2025-10-06 13:03:43,063 | INFO     | neventsw: 0
[2025-10-06 06:04:20] 2025-10-06 13:03:43,063 | INFO     | pid: 2046731
[2025-10-06 06:04:20] 2025-10-06 13:03:43,063 | INFO     | pgrp: 2046731
[2025-10-06 06:04:20] 2025-10-06 13:03:43,063 | INFO     | corecount: 8
[2025-10-06 06:04:20] 2025-10-06 13:03:43,063 | INFO     | event service: False
[2025-10-06 06:04:20] 2025-10-06 13:03:43,063 | INFO     | sizes: {0: 2348645, 1: 2348645, 2: 2348844, 3: 2348900, 15: 2348900, 26: 2348928, 37: 2349084, 49: 2349112, 60: 2349140, 61: 2349430, 71: 2349458, 178: 2372933, 17
[2025-10-06 06:04:20] 2025-10-06 13:03:43,063 | INFO     | --------------------------------------------------
[2025-10-06 06:04:20] 2025-10-06 13:03:43,063 | INFO     | 
[2025-10-06 06:04:20] 2025-10-06 13:03:43,063 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-10-06 06:04:20] 2025-10-06 13:03:43,253 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-06 06:04:20] 2025-10-06 13:03:43,253 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-06 06:04:20] 2025-10-06 13:03:43,253 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-06 06:04:20] 2025-10-06 13:03:43,253 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-06 06:04:20] 2025-10-06 13:03:43,254 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-06 06:04:20] 2025-10-06 13:03:43,254 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-06 06:04:20] 2025-10-06 13:03:43,254 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-06 06:04:20] 2025-10-06 13:03:43,254 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-06 06:04:20] 2025-10-06 13:03:43,254 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-06 06:04:20] 2025-10-06 13:03:43,254 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-06 06:04:20] 2025-10-06 13:03:43,254 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-06 06:04:20] 2025-10-06 13:03:43,254 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-06 06:04:20] 2025-10-06 13:03:43,254 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-06 06:04:20] 2025-10-06 13:03:43,254 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-06 06:04:20] 2025-10-06 13:03:43,254 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-06 06:04:20] 2025-10-06 13:03:43,254 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-06 06:04:20] 2025-10-06 13:03:43,254 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-06 06:04:20] 2025-10-06 13:03:43,255 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-06 06:04:20] 2025-10-06 13:03:43,255 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-06 06:04:20] 2025-10-06 13:03:43,255 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-06 06:04:20] 2025-10-06 13:03:43,255 | INFO     | job 6832634376 has completed (purged errors)
[2025-10-06 06:04:20] 2025-10-06 13:03:43,255 | INFO     | overall cleanup function is called
[2025-10-06 06:04:20] 2025-10-06 13:03:44,156 | INFO     | PID=2039691 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-06 06:04:20] 2025-10-06 13:03:44,164 | INFO     | .. there are 33 such processes running
[2025-10-06 06:04:20] 2025-10-06 13:03:44,350 | INFO     | --- collectZombieJob: --- 10, [2046731]
[2025-10-06 06:04:20] 2025-10-06 13:03:44,350 | INFO     | zombie collector waiting for pid 2046731
[2025-10-06 06:04:20] 2025-10-06 13:03:44,350 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-06 06:04:20] 2025-10-06 13:03:44,350 | INFO     | collected zombie processes
[2025-10-06 06:04:20] 2025-10-06 13:03:44,351 | INFO     | will attempt to kill all subprocesses of pid=2046731
[2025-10-06 06:04:20] 2025-10-06 13:03:46,160 | INFO     | process IDs to be killed: [2046731] (in reverse order)
[2025-10-06 06:04:20] 2025-10-06 13:03:46,636 | WARNING  | found no corresponding commands to process id(s)
[2025-10-06 06:04:20] 2025-10-06 13:03:46,636 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-06 06:04:20] 2025-10-06 13:03:46,680 | INFO     | did not find any defunct processes belonging to 2046731
[2025-10-06 06:04:20] 2025-10-06 13:03:46,779 | INFO     | did not find any defunct processes belonging to 2046731
[2025-10-06 06:04:20] 2025-10-06 13:03:46,779 | INFO     | ready for new job
[2025-10-06 06:04:20] 2025-10-06 13:03:46,780 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-06 06:04:20] 2025-10-06 13:03:46,781 | INFO     | ***************************************
[2025-10-06 06:04:20] 2025-10-06 13:03:46,781 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-06 06:04:20] 2025-10-06 13:03:46,781 | INFO     | ***************************************
[2025-10-06 06:04:20] 2025-10-06 13:03:46,781 | INFO     | 
[2025-10-06 06:04:20] 2025-10-06 13:03:46,783 | INFO     | architecture information:
[2025-10-06 06:04:20] 2025-10-06 13:03:46,803 | INFO     | executing command: cat /etc/os-release
[2025-10-06 06:04:20] 2025-10-06 13:03:46,851 | INFO     | cat /etc/os-release:
[2025-10-06 06:04:20] NAME="CentOS Linux"
[2025-10-06 06:04:20] VERSION="7 (Core)"
[2025-10-06 06:04:20] ID="centos"
[2025-10-06 06:04:20] ID_LIKE="rhel fedora"
[2025-10-06 06:04:20] VERSION_ID="7"
[2025-10-06 06:04:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-06 06:04:20] ANSI_COLOR="0;31"
[2025-10-06 06:04:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-06 06:04:20] HOME_URL="https://www.centos.org/"
[2025-10-06 06:04:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-06 06:04:20] 
[2025-10-06 06:04:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-06 06:04:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-06 06:04:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-06 06:04:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-06 06:04:20] 
[2025-10-06 06:04:20] 2025-10-06 13:03:46,852 | INFO     | ***************************************
[2025-10-06 06:04:20] 2025-10-06 13:03:47,354 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-10-06 06:04:20] 2025-10-06 13:03:47,523 | INFO     | sufficient remaining disk space (1425440505856 B)
[2025-10-06 06:04:20] 2025-10-06 13:03:47,523 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-06 06:04:20] 2025-10-06 13:03:47,523 | INFO     | current server update state: UPDATING_FINAL
[2025-10-06 06:04:20] 2025-10-06 13:03:47,523 | INFO     | update_server=False
[2025-10-06 06:04:20] 2025-10-06 13:03:47,523 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-06 06:04:20] 2025-10-06 13:03:47,714 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-06 06:04:20] 2025-10-06 13:03:47,736 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-06 06:04:20] 2025-10-06 13:03:47,736 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-06 06:04:20] 2025-10-06 13:03:47,736 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-06 06:04:20] 2025-10-06 13:03:47,736 | INFO     | will abort loop
[2025-10-06 06:04:20] 2025-10-06 13:03:47,941 | INFO     | all job control threads have been joined
[2025-10-06 06:04:20] 2025-10-06 13:03:48,144 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-06 06:04:20] 2025-10-06 13:03:48,535 | INFO     | [job] retrieve thread has finished
[2025-10-06 06:04:20] 2025-10-06 13:03:48,593 | INFO     | all data control threads have been joined
[2025-10-06 06:04:20] 2025-10-06 13:03:48,693 | INFO     | [monitor] cgroup control has ended
[2025-10-06 06:04:20] 2025-10-06 13:03:48,742 | INFO     | [job] job monitor thread has finished
[2025-10-06 06:04:20] 2025-10-06 13:03:48,864 | INFO     | [payload] validate_post thread has finished
[2025-10-06 06:04:20] 2025-10-06 13:03:48,921 | INFO     | all payload control threads have been joined
[2025-10-06 06:04:20] 2025-10-06 13:03:48,947 | INFO     | [job] control thread has finished
[2025-10-06 06:04:20] 2025-10-06 13:03:49,087 | INFO     | [data] copytool_in thread has finished
[2025-10-06 06:04:20] 2025-10-06 13:03:49,152 | INFO     | [job] queue monitor thread has finished
[2025-10-06 06:04:20] 2025-10-06 13:03:49,181 | INFO     | [payload] failed_post thread has finished
[2025-10-06 06:04:20] 2025-10-06 13:03:49,244 | INFO     | [payload] validate_pre thread has finished
[2025-10-06 06:04:20] 2025-10-06 13:03:49,296 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-06 06:04:20] 2025-10-06 13:03:49,554 | INFO     | [payload] execute_payloads thread has finished
[2025-10-06 06:04:20] 2025-10-06 13:03:49,555 | INFO     | [job] create_data_payload thread has finished
[2025-10-06 06:04:20] 2025-10-06 13:03:49,558 | INFO     | [job] validate thread has finished
[2025-10-06 06:04:20] 2025-10-06 13:03:49,600 | INFO     | [data] control thread has finished
[2025-10-06 06:04:20] 2025-10-06 13:03:49,738 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-06 06:04:20] 2025-10-06 13:03:49,742 | INFO     | [data] copytool_out thread has finished
[2025-10-06 06:04:20] 2025-10-06 13:03:49,927 | INFO     | [payload] control thread has finished
[2025-10-06 06:04:20] 2025-10-06 13:03:53,752 | INFO     | [data] queue_monitor thread has finished
[2025-10-06 06:04:20] 2025-10-06 13:03:54,960 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139831005296448)>', '<ExcThread(monitor, started 139830092617472)>']
[2025-10-06 06:04:20] 2025-10-06 13:03:59,994 | INFO     | all workflow threads have been joined
[2025-10-06 06:04:20] 2025-10-06 13:03:59,994 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-06 06:04:20] 2025-10-06 13:03:59,995 | INFO     | traces error code: 0
[2025-10-06 06:04:20] 2025-10-06 13:03:59,995 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-06 06:04:20] 2025-10-06 13:04:18,437 | INFO     | PID=2039691 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-06 06:04:20] 2025-10-06 13:04:18,438 | INFO     | .. there are 33 such processes running
[2025-10-06 06:04:20] 2025-10-06 13:04:18,465 | INFO     | found 0 job(s) in 20 queues
[2025-10-06 06:04:20] 2025-10-06 13:04:18,465 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-06 06:04:20] 2025-10-06 13:04:18,465 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-06 06:04:20] 2025-10-06 13:04:18,465 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-06 06:04:20] 2025-10-06 13:04:18,465 | CRITICAL | thread 'MainThread' is not alive
[2025-10-06 06:04:20] 2025-10-06 13:04:18,465 | INFO     | [monitor] control thread has ended
[2025-10-06 06:04:20] 2025-10-06 13:04:18,850 [wrapper] ==== pilot stdout END ====
[2025-10-06 06:04:20] 2025-10-06 13:04:18,856 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-06 06:04:20] 2025-10-06 13:04:18,927 [wrapper] pilotpid: 2039691
[2025-10-06 06:04:20] 2025-10-06 13:04:18,971 [wrapper] Pilot exit status: 0
[2025-10-06 06:04:20] 2025-10-06 13:04:19,099 [wrapper] pandaids: 6832634376
[2025-10-06 06:04:20] 2025-10-06 13:04:19,587 [wrapper] cleanup supervisor_pilot 2039697 2039692
[2025-10-06 06:04:20] 2025-10-06 13:04:19,598 [wrapper] Test setup, not cleaning
[2025-10-06 06:04:20] 2025-10-06 13:04:19,653 [wrapper] apfmon messages muted
[2025-10-06 06:04:20] 2025-10-06 13:04:19,731 [wrapper] ==== wrapper stdout END ====
[2025-10-06 06:04:20] 2025-10-06 13:04:19,768 [wrapper] ==== wrapper stderr END ====
[2025-10-06 06:04:20]  *** Error codes and diagnostics ***
[2025-10-06 06:04:20]     "exeErrorCode": 65,
[2025-10-06 06:04:20]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-10-06 06:04:20]     "pilotErrorCode": 1305,
[2025-10-06 06:04:20]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-10-06 06:04:20]  *** Listing of results directory ***
[2025-10-06 06:04:20] total 210960
[2025-10-06 06:04:20] -rw-r--r--. 1 boinc boinc    552446 Oct  6 03:49 pilot3.tar.gz
[2025-10-06 06:04:20] -rw-r--r--. 1 boinc boinc      5112 Oct  6 03:56 queuedata.json
[2025-10-06 06:04:20] -rwx------. 1 boinc boinc     36292 Oct  6 03:57 runpilot2-wrapper.sh
[2025-10-06 06:04:20] -rw-r--r--. 1 boinc boinc       100 Oct  6 05:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-06 06:04:20] -rwxr-xr-x. 1 boinc boinc      7986 Oct  6 05:56 run_atlas
[2025-10-06 06:04:20] -rw-r--r--. 1 boinc boinc       105 Oct  6 05:56 job.xml
[2025-10-06 06:04:20] -rw-r--r--. 1 boinc boinc      6444 Oct  6 05:56 init_data.xml
[2025-10-06 06:04:20] -rw-r--r--. 2 boinc boinc 211873987 Oct  6 05:56 EVNT.46376901._004073.pool.root.1
[2025-10-06 06:04:20] -rw-r--r--. 2 boinc boinc     15120 Oct  6 05:56 start_atlas.sh
[2025-10-06 06:04:20] drwxrwx--x. 2 boinc boinc      4096 Oct  6 05:56 shared
[2025-10-06 06:04:20] -rw-r--r--. 2 boinc boinc    565604 Oct  6 05:56 input.tar.gz
[2025-10-06 06:04:20] -rw-r--r--. 1 boinc boinc         0 Oct  6 05:56 boinc_lockfile
[2025-10-06 06:04:20] -rw-r--r--. 1 boinc boinc      2520 Oct  6 05:56 pandaJob.out
[2025-10-06 06:04:20] -rw-------. 1 boinc boinc    975008 Oct  6 05:56 agis_schedconf.cvmfs.json
[2025-10-06 06:04:20] -rw-------. 1 boinc boinc   1560401 Oct  6 05:56 agis_ddmendpoints.agis.ALL.json
[2025-10-06 06:04:20] drwx------. 4 boinc boinc      4096 Oct  6 05:56 pilot3
[2025-10-06 06:04:20] -rw-r--r--. 1 boinc boinc       524 Oct  6 06:00 boinc_task_state.xml
[2025-10-06 06:04:20] -rw-------. 1 boinc boinc       987 Oct  6 06:01 memory_monitor_summary.json
[2025-10-06 06:04:20] -rw-------. 1 boinc boinc     23176 Oct  6 06:01 log.46376905._109884.job.log.tgz.1
[2025-10-06 06:04:20] -rw-------. 1 boinc boinc      8404 Oct  6 06:03 heartbeat.json
[2025-10-06 06:04:20] -rw-r--r--. 1 boinc boinc      8192 Oct  6 06:04 boinc_mmap_file
[2025-10-06 06:04:20] -rw-r--r--. 1 boinc boinc        23 Oct  6 06:04 wrapper_checkpoint.txt
[2025-10-06 06:04:20] -rw-------. 1 boinc boinc        95 Oct  6 06:04 pilot_heartbeat.json
[2025-10-06 06:04:20] -rw-------. 1 boinc boinc       893 Oct  6 06:04 pilotlog.txt
[2025-10-06 06:04:20] -rw-------. 1 boinc boinc    106080 Oct  6 06:04 log.46376905._109884.job.log.1
[2025-10-06 06:04:20] -rw-------. 1 boinc boinc       188 Oct  6 06:04 output.list
[2025-10-06 06:04:20] -rw-r--r--. 1 boinc boinc       620 Oct  6 06:04 runtime_log
[2025-10-06 06:04:20] -rw-------. 1 boinc boinc    153600 Oct  6 06:04 result.tar.gz
[2025-10-06 06:04:20] -rw-r--r--. 1 boinc boinc      8526 Oct  6 06:04 runtime_log.err
[2025-10-06 06:04:20] -rw-------. 1 boinc boinc       647 Oct  6 06:04 p2dMDmX5xP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgGTNDmSGjOrn.diag
[2025-10-06 06:04:20] -rw-r--r--. 1 boinc boinc     21955 Oct  6 06:04 stderr.txt
[2025-10-06 06:04:20] No HITS result produced
[2025-10-06 06:04:20]  *** Contents of shared directory: ***
[2025-10-06 06:04:20] total 207640
[2025-10-06 06:04:20] -rw-r--r--. 2 boinc boinc 211873987 Oct  6 05:56 ATLAS.root_0
[2025-10-06 06:04:20] -rw-r--r--. 2 boinc boinc     15120 Oct  6 05:56 start_atlas.sh
[2025-10-06 06:04:20] -rw-r--r--. 2 boinc boinc    565604 Oct  6 05:56 input.tar.gz
[2025-10-06 06:04:20] -rw-------. 1 boinc boinc    153600 Oct  6 06:04 result.tar.gz
06:04:21 (2035661): run_atlas exited; CPU time 35.980748
06:04:21 (2035661): called boinc_finish(0)

</stderr_txt>
]]>

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