Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:03:30 (3920083): wrapper (7.7.26015): starting
06:03:30 (3920083): wrapper: running run_atlas (--nthreads 12)
[2025-10-06 06:03:30] Arguments: --nthreads 12
[2025-10-06 06:03:30] Threads: 12
[2025-10-06 06:03:30] Checking for CVMFS
[2025-10-06 06:03:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-06 06:03:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-06 06:03:30] Running cvmfs_config stat atlas.cern.ch
[2025-10-06 06:03:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-06 06:03:30] 2.11.5.0 2120 21314 213728 151398 3 266 40176688 45568001 13700 130560 0 200824692 99.850 95651647 27865 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-10-06 06:03:30] CVMFS is ok
[2025-10-06 06:03:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-06 06:03:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-06 06:03:30] Further information can be found at the LHC@home message board.
[2025-10-06 06:03:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-06 06:03:30] Checking for apptainer binary...
[2025-10-06 06:03:30] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-06 06:03:30] Running /usr/bin/apptainer --version
[2025-10-06 06:03:30] apptainer version 1.4.1-1.el9
[2025-10-06 06:03:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-06 06:03:30] wns0029.triumf.lcg
[2025-10-06 06:03:30] apptainer works
[2025-10-06 06:03:30] Set ATHENA_PROC_NUMBER=12
[2025-10-06 06:03:30] Set ATHENA_CORE_NUMBER=12
[2025-10-06 06:03:30] Starting ATLAS job with PandaID=6832634380
[2025-10-06 06:03:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-06 06:08:05]  *** The last 200 lines of the pilot log: ***
[2025-10-06 06:08:06] 2025-10-06 13:07:30,241 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-06 06:08:06] 2025-10-06 13:07:30,241 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-06 06:08:06] 2025-10-06 13:07:30,241 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-06 06:08:06] 2025-10-06 13:07:30,242 | WARNING  | wrong length of table data, x=[1759755891.0], y=[5274.0] (must be same and length>=4)
[2025-10-06 06:08:06] 2025-10-06 13:07:30,242 | INFO     | could have reported an average CPU frequency of 2758 MHz (4 samples)
[2025-10-06 06:08:06] 2025-10-06 13:07:30,242 | INFO     | ..............................
[2025-10-06 06:08:06] 2025-10-06 13:07:30,243 | INFO     | . Timing measurements:
[2025-10-06 06:08:06] 2025-10-06 13:07:30,243 | INFO     | . get job = 0 s
[2025-10-06 06:08:06] 2025-10-06 13:07:30,243 | INFO     | . initial setup = 4 s
[2025-10-06 06:08:06] 2025-10-06 13:07:30,243 | INFO     | . payload setup = 12 s
[2025-10-06 06:08:06] 2025-10-06 13:07:30,243 | INFO     | . stage-in = 0 s
[2025-10-06 06:08:06] 2025-10-06 13:07:30,243 | INFO     | . payload execution = 29 s
[2025-10-06 06:08:06] 2025-10-06 13:07:30,243 | INFO     | . stage-out = 1 s
[2025-10-06 06:08:06] 2025-10-06 13:07:30,243 | INFO     | . log creation = 0 s
[2025-10-06 06:08:06] 2025-10-06 13:07:30,243 | INFO     | ..............................
[2025-10-06 06:08:06] 2025-10-06 13:07:30,243 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-06 06:08:06] 2025-10-06 13:07:30,243 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6832634380/pilotlog.txt
[2025-10-06 06:08:06] 2025-10-06 13:07:30,301 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-06 06:08:06] - Log from pilotlog.txt -
[2025-10-06 06:08:06] 2025-10-06 13:07:30,240 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6832634380/memory_monitor_summary.json (trf name=prmon)
[2025-10-06 06:08:06] 2025-10-06 13:07:30,241 | INFO     | extracted standard info from prmon json
[2025-10-06 06:08:06] 2025-10-06 13:07:30,241 | INFO     | extracted standard memory fields from prmon json
[2025-10-06 06:08:06] 2025-10-06 13:07:30,241 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-06 06:08:06] 2025-10-06 13:07:30,241 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-06 06:08:06] 2025-10-06 13:07:30,241 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-06 06:08:06] 2025-10-06 13:07:30,242 | WARNING  | wrong length of table data, x=[1759755891.0], y=[5274.0] (must be same and length>=4)
[2025-10-06 06:08:06] 2025-10-06 13:07:30,242 | INFO     | could have reported an average CPU frequency of 2758 MHz (4 samples)
[2025-10-06 06:08:06] 2025-10-06 13:07:30,242 | INFO     | ..............................
[2025-10-06 06:08:06] 2025-10-06 13:07:30,243 | INFO     | . Timing measurements:
[2025-10-06 06:08:06] 2025-10-06 13:07:30,243 | INFO     | . get job = 0 s
[2025-10-06 06:08:06] 2025-10-06 13:07:30,243 | INFO     | . initial setup = 4 s
[2025-10-06 06:08:06] 2025-10-06 13:07:30,243 | INFO     | . payload setup = 12 s
[2025-10-06 06:08:06] 2025-10-06 13:07:30,243 | INFO     | . stage-in = 0 s
[2025-10-06 06:08:06] 2025-10-06 13:07:30,243 | INFO     | . payload execution = 29 s
[2025-10-06 06:08:06] 2025-10-06 13:07:30,243 | INFO     | . stage-out = 1 s
[2025-10-06 06:08:06] 2025-10-06 13:07:30,243 | INFO     | . log creation = 0 s
[2025-10-06 06:08:06] 2025-10-06 13:07:30,243 | INFO     | ..............................
[2025-10-06 06:08:06] 2025-10-06 13:07:30,243 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-06 06:08:06] 2025-10-06 13:07:30,243 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6832634380/pilotlog.txt
[2025-10-06 06:08:06] 2025-10-06 13:07:30,302 | WARNING  | 
[2025-10-06 06:08:06] [begin log extracts]
[2025-10-06 06:08:06] - Log from pilotlog.txt -
[2025-10-06 06:08:06] 2025-10-06 13:07:30,240 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6832634380/memory_monitor_summary.json (trf name=prmon)
[2025-10-06 06:08:06] 2025-10-06 13:07:30,241 | INFO     | extracted standard info from prmon json
[2025-10-06 06:08:06] 2025-10-06 13:07:30,241 | INFO     | extracted standard memory fields from prmon json
[2025-10-06 06:08:06] 2025-10-06 13:07:30,241 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-06 06:08:06] 2025-10-06 13:07:30,241 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-06 06:08:06] 2025-10-06 13:07:30,241 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-06 06:08:06] 2025-10-06 13:07:30,242 | WARNING  | wrong length of table data, x=[1759755891.0], y=[5274.0] (must be same and length>=4)
[2025-10-06 06:08:06] 2025-10-06 13:07:30,242 | INFO     | could have reported an average CPU frequency of 2758 MHz (4 samples)
[2025-10-06 06:08:06] 2025-10-06 13:07:30,242 | INFO     | ..............................
[2025-10-06 06:08:06] 2025-10-06 13:07:30,243 | INFO     | . Timing measurements:
[2025-10-06 06:08:06] 2025-10-06 13:07:30,243 | INFO     | . get job = 0 s
[2025-10-06 06:08:06] 2025-10-06 13:07:30,243 | INFO     | . initial setup = 4 s
[2025-10-06 06:08:06] 2025-10-06 13:07:30,243 | INFO     | . payload setup = 12 s
[2025-10-06 06:08:06] 2025-10-06 13:07:30,243 | INFO     | . stage-in = 0 s
[2025-10-06 06:08:06] 2025-10-06 13:07:30,243 | INFO     | . payload execution = 29 s
[2025-10-06 06:08:06] 2025-10-06 13:07:30,243 | INFO     | . stage-out = 1 s
[2025-10-06 06:08:06] 2025-10-06 13:07:30,243 | INFO     | . log creation = 0 s
[2025-10-06 06:08:06] 2025-10-06 13:07:30,243 | INFO     | ..............................
[2025-10-06 06:08:06] 2025-10-06 13:07:30,243 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-06 06:08:06] 2025-10-06 13:07:30,243 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6832634380/pilotlog.txt
[2025-10-06 06:08:06] [end log extracts]
[2025-10-06 06:08:06] 2025-10-06 13:07:30,302 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-06 06:08:06] 2025-10-06 13:07:30,303 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-10-06 06:08:06] 2025-10-06 13:07:30,645 | INFO     | 
[2025-10-06 06:08:06] 2025-10-06 13:07:30,645 | INFO     | job summary report
[2025-10-06 06:08:06] 2025-10-06 13:07:30,645 | INFO     | --------------------------------------------------
[2025-10-06 06:08:06] 2025-10-06 13:07:30,645 | INFO     | PanDA job id: 6832634380
[2025-10-06 06:08:06] 2025-10-06 13:07:30,646 | INFO     | task id: 46376905
[2025-10-06 06:08:06] 2025-10-06 13:07:30,646 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-06 06:05:00,087 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-06 06:08:06] 2025-10-06 13:07:30,646 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-06 06:08:06] 2025-10-06 13:07:30,646 | INFO     | pilot state: failed 
[2025-10-06 06:08:06] 2025-10-06 13:07:30,646 | INFO     | transexitcode: 65
[2025-10-06 06:08:06] 2025-10-06 13:07:30,646 | INFO     | exeerrorcode: 65
[2025-10-06 06:08:06] 2025-10-06 13:07:30,646 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-10-06 06:08:06] 2025-10-06 13:07:30,646 | INFO     | exitcode: 65
[2025-10-06 06:08:06] 2025-10-06 13:07:30,646 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-10-06 06:08:06] 2025-10-06 13:07:30,646 | INFO     | cpuconsumptiontime: 15 s
[2025-10-06 06:08:06] 2025-10-06 13:07:30,646 | INFO     | nevents: 0
[2025-10-06 06:08:06] 2025-10-06 13:07:30,646 | INFO     | neventsw: 0
[2025-10-06 06:08:06] 2025-10-06 13:07:30,646 | INFO     | pid: 3930402
[2025-10-06 06:08:06] 2025-10-06 13:07:30,646 | INFO     | pgrp: 3930402
[2025-10-06 06:08:06] 2025-10-06 13:07:30,646 | INFO     | corecount: 12
[2025-10-06 06:08:06] 2025-10-06 13:07:30,646 | INFO     | event service: False
[2025-10-06 06:08:06] 2025-10-06 13:07:30,646 | INFO     | sizes: {0: 2348646, 1: 2348845, 12: 2348845, 14: 2349135, 23: 2349163, 45: 2372494, 47: 2376786, 50: 2376842, 185: 2377008}
[2025-10-06 06:08:06] 2025-10-06 13:07:30,646 | INFO     | --------------------------------------------------
[2025-10-06 06:08:06] 2025-10-06 13:07:30,646 | INFO     | 
[2025-10-06 06:08:06] 2025-10-06 13:07:30,646 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-10-06 06:08:06] 2025-10-06 13:07:30,663 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-06 06:08:06] 2025-10-06 13:07:30,664 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-06 06:08:06] 2025-10-06 13:07:30,664 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-06 06:08:06] 2025-10-06 13:07:30,664 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-06 06:08:06] 2025-10-06 13:07:30,664 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-06 06:08:06] 2025-10-06 13:07:30,664 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-06 06:08:06] 2025-10-06 13:07:30,664 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-06 06:08:06] 2025-10-06 13:07:30,664 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-06 06:08:06] 2025-10-06 13:07:30,664 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-06 06:08:06] 2025-10-06 13:07:30,664 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-06 06:08:06] 2025-10-06 13:07:30,664 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-06 06:08:06] 2025-10-06 13:07:30,664 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-06 06:08:06] 2025-10-06 13:07:30,664 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-06 06:08:06] 2025-10-06 13:07:30,664 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-06 06:08:06] 2025-10-06 13:07:30,664 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-06 06:08:06] 2025-10-06 13:07:30,664 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-06 06:08:06] 2025-10-06 13:07:30,664 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-06 06:08:06] 2025-10-06 13:07:30,664 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-06 06:08:06] 2025-10-06 13:07:30,664 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-06 06:08:06] 2025-10-06 13:07:30,664 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-06 06:08:06] 2025-10-06 13:07:30,665 | INFO     | job 6832634380 has completed (purged errors)
[2025-10-06 06:08:06] 2025-10-06 13:07:30,665 | INFO     | overall cleanup function is called
[2025-10-06 06:08:06] 2025-10-06 13:07:31,673 | INFO     | --- collectZombieJob: --- 10, [3930402]
[2025-10-06 06:08:06] 2025-10-06 13:07:31,673 | INFO     | zombie collector waiting for pid 3930402
[2025-10-06 06:08:06] 2025-10-06 13:07:31,673 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-06 06:08:06] 2025-10-06 13:07:31,673 | INFO     | collected zombie processes
[2025-10-06 06:08:06] 2025-10-06 13:07:31,673 | INFO     | will attempt to kill all subprocesses of pid=3930402
[2025-10-06 06:08:06] 2025-10-06 13:07:32,009 | INFO     | process IDs to be killed: [3930402] (in reverse order)
[2025-10-06 06:08:06] 2025-10-06 13:07:32,115 | WARNING  | found no corresponding commands to process id(s)
[2025-10-06 06:08:06] 2025-10-06 13:07:32,116 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-06 06:08:06] 2025-10-06 13:07:32,198 | INFO     | did not find any defunct processes belonging to 3930402
[2025-10-06 06:08:06] 2025-10-06 13:07:32,225 | INFO     | did not find any defunct processes belonging to 3930402
[2025-10-06 06:08:06] 2025-10-06 13:07:32,225 | INFO     | ready for new job
[2025-10-06 06:08:06] 2025-10-06 13:07:32,226 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-06 06:08:06] 2025-10-06 13:07:32,239 | INFO     | ***************************************
[2025-10-06 06:08:06] 2025-10-06 13:07:32,239 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-06 06:08:06] 2025-10-06 13:07:32,239 | INFO     | ***************************************
[2025-10-06 06:08:06] 2025-10-06 13:07:32,239 | INFO     | 
[2025-10-06 06:08:06] 2025-10-06 13:07:32,241 | INFO     | architecture information:
[2025-10-06 06:08:06] 2025-10-06 13:07:32,251 | INFO     | executing command: cat /etc/os-release
[2025-10-06 06:08:06] 2025-10-06 13:07:32,324 | INFO     | cat /etc/os-release:
[2025-10-06 06:08:06] NAME="CentOS Linux"
[2025-10-06 06:08:06] VERSION="7 (Core)"
[2025-10-06 06:08:06] ID="centos"
[2025-10-06 06:08:06] ID_LIKE="rhel fedora"
[2025-10-06 06:08:06] VERSION_ID="7"
[2025-10-06 06:08:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-06 06:08:06] ANSI_COLOR="0;31"
[2025-10-06 06:08:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-06 06:08:06] HOME_URL="https://www.centos.org/"
[2025-10-06 06:08:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-06 06:08:06] 
[2025-10-06 06:08:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-06 06:08:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-06 06:08:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-06 06:08:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-06 06:08:06] 
[2025-10-06 06:08:06] 2025-10-06 13:07:32,324 | INFO     | ***************************************
[2025-10-06 06:08:06] 2025-10-06 13:07:32,827 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-10-06 06:08:06] 2025-10-06 13:07:32,931 | INFO     | sufficient remaining disk space (2228503969792 B)
[2025-10-06 06:08:06] 2025-10-06 13:07:32,932 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-06 06:08:06] 2025-10-06 13:07:32,932 | INFO     | current server update state: UPDATING_FINAL
[2025-10-06 06:08:06] 2025-10-06 13:07:32,932 | INFO     | update_server=False
[2025-10-06 06:08:06] 2025-10-06 13:07:32,932 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-06 06:08:06] 2025-10-06 13:07:32,933 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-06 06:08:06] 2025-10-06 13:07:32,933 | INFO     | aborting loop
[2025-10-06 06:08:06] 2025-10-06 13:07:33,081 | INFO     | all data control threads have been joined
[2025-10-06 06:08:06] 2025-10-06 13:07:33,083 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-06 06:08:06] 2025-10-06 13:07:33,590 | INFO     | all job control threads have been joined
[2025-10-06 06:08:06] 2025-10-06 13:07:33,621 | INFO     | all payload control threads have been joined
[2025-10-06 06:08:06] 2025-10-06 13:07:33,745 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-06 06:08:06] 2025-10-06 13:07:33,938 | INFO     | [job] retrieve thread has finished
[2025-10-06 06:08:06] 2025-10-06 13:07:33,939 | INFO     | [job] job monitor thread has finished
[2025-10-06 06:08:06] 2025-10-06 13:07:34,087 | INFO     | [data] control thread has finished
[2025-10-06 06:08:06] 2025-10-06 13:07:34,468 | INFO     | [payload] validate_pre thread has finished
[2025-10-06 06:08:06] 2025-10-06 13:07:34,596 | INFO     | [job] control thread has finished
[2025-10-06 06:08:06] 2025-10-06 13:07:34,627 | INFO     | [payload] control thread has finished
[2025-10-06 06:08:06] 2025-10-06 13:07:34,960 | INFO     | [payload] validate_post thread has finished
[2025-10-06 06:08:06] 2025-10-06 13:07:35,089 | INFO     | [payload] execute_payloads thread has finished
[2025-10-06 06:08:06] 2025-10-06 13:07:35,089 | INFO     | [job] create_data_payload thread has finished
[2025-10-06 06:08:06] 2025-10-06 13:07:35,121 | INFO     | [job] validate thread has finished
[2025-10-06 06:08:06] 2025-10-06 13:07:35,129 | INFO     | [payload] failed_post thread has finished
[2025-10-06 06:08:06] 2025-10-06 13:07:35,212 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-06 06:08:06] 2025-10-06 13:07:35,266 | INFO     | [data] copytool_in thread has finished
[2025-10-06 06:08:06] 2025-10-06 13:07:35,653 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-06 06:08:06] 2025-10-06 13:07:35,760 | INFO     | [data] copytool_out thread has finished
[2025-10-06 06:08:06] 2025-10-06 13:07:36,659 | INFO     | [job] queue monitor thread has finished
[2025-10-06 06:08:06] 2025-10-06 13:07:37,092 | INFO     | [data] queue_monitor thread has finished
[2025-10-06 06:08:06] 2025-10-06 13:07:51,555 | INFO     | [monitor] cgroup control has ended
[2025-10-06 06:08:06] 2025-10-06 13:07:52,907 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139875213264704)>', '<ExcThread(monitor, started 139874885666560)>']
[2025-10-06 06:08:06] 2025-10-06 13:07:57,933 | INFO     | all workflow threads have been joined
[2025-10-06 06:08:06] 2025-10-06 13:07:57,933 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-06 06:08:06] 2025-10-06 13:07:57,933 | INFO     | traces error code: 0
[2025-10-06 06:08:06] 2025-10-06 13:07:57,934 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-06 06:08:06] 2025-10-06 13:08:03,553 | INFO     | PID=3923733 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-06 06:08:06] 2025-10-06 13:08:03,554 | INFO     | .. there are 28 such processes running
[2025-10-06 06:08:06] 2025-10-06 13:08:03,555 | INFO     | found 0 job(s) in 20 queues
[2025-10-06 06:08:06] 2025-10-06 13:08:03,555 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-06 06:08:06] 2025-10-06 13:08:03,555 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-06 06:08:06] 2025-10-06 13:08:03,555 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-06 06:08:06] 2025-10-06 13:08:03,555 | INFO     | [monitor] control thread has ended
[2025-10-06 06:08:06] 2025-10-06 13:08:04,289 [wrapper] ==== pilot stdout END ====
[2025-10-06 06:08:06] 2025-10-06 13:08:04,328 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-06 06:08:06] 2025-10-06 13:08:04,377 [wrapper] pilotpid: 3923733
[2025-10-06 06:08:06] 2025-10-06 13:08:04,419 [wrapper] Pilot exit status: 0
[2025-10-06 06:08:06] 2025-10-06 13:08:04,620 [wrapper] pandaids: 6832634380
[2025-10-06 06:08:06] 2025-10-06 13:08:05,004 [wrapper] cleanup supervisor_pilot 3923739 3923734
[2025-10-06 06:08:06] 2025-10-06 13:08:05,035 [wrapper] Test setup, not cleaning
[2025-10-06 06:08:06] 2025-10-06 13:08:05,082 [wrapper] apfmon messages muted
[2025-10-06 06:08:06] 2025-10-06 13:08:05,115 [wrapper] ==== wrapper stdout END ====
[2025-10-06 06:08:06] 2025-10-06 13:08:05,143 [wrapper] ==== wrapper stderr END ====
[2025-10-06 06:08:06]  *** Error codes and diagnostics ***
[2025-10-06 06:08:06]     "exeErrorCode": 65,
[2025-10-06 06:08:06]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-10-06 06:08:06]     "pilotErrorCode": 1305,
[2025-10-06 06:08:06]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-10-06 06:08:06]  *** Listing of results directory ***
[2025-10-06 06:08:06] total 210924
[2025-10-06 06:08:06] -rw-r--r--. 1 boinc boinc    552446 Oct  6 03:49 pilot3.tar.gz
[2025-10-06 06:08:06] -rwx------. 1 boinc boinc     36292 Oct  6 03:54 runpilot2-wrapper.sh
[2025-10-06 06:08:06] -rw-r--r--. 1 boinc boinc      5112 Oct  6 03:54 queuedata.json
[2025-10-06 06:08:06] -rw-r--r--. 1 boinc boinc       100 Oct  6 06:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-06 06:08:06] -rwxr-xr-x. 1 boinc boinc      7986 Oct  6 06:03 run_atlas
[2025-10-06 06:08:06] -rw-r--r--. 1 boinc boinc       105 Oct  6 06:03 job.xml
[2025-10-06 06:08:06] -rw-r--r--. 1 boinc boinc      6593 Oct  6 06:03 init_data.xml
[2025-10-06 06:08:06] -rw-r--r--. 2 boinc boinc 211873987 Oct  6 06:03 EVNT.46376901._004073.pool.root.1
[2025-10-06 06:08:06] -rw-r--r--. 2 boinc boinc     15120 Oct  6 06:03 start_atlas.sh
[2025-10-06 06:08:06] drwxrwx--x. 2 boinc boinc      4096 Oct  6 06:03 shared
[2025-10-06 06:08:06] -rw-r--r--. 2 boinc boinc    565603 Oct  6 06:03 input.tar.gz
[2025-10-06 06:08:06] -rw-r--r--. 1 boinc boinc         0 Oct  6 06:03 boinc_lockfile
[2025-10-06 06:08:06] -rw-r--r--. 1 boinc boinc      2521 Oct  6 06:03 pandaJob.out
[2025-10-06 06:08:06] -rw-------. 1 boinc boinc    975008 Oct  6 06:03 agis_schedconf.cvmfs.json
[2025-10-06 06:08:06] -rw-------. 1 boinc boinc   1560401 Oct  6 06:03 agis_ddmendpoints.agis.ALL.json
[2025-10-06 06:08:06] drwx------. 4 boinc boinc      4096 Oct  6 06:03 pilot3
[2025-10-06 06:08:06] -rw-------. 1 boinc boinc       953 Oct  6 06:05 memory_monitor_summary.json
[2025-10-06 06:08:06] -rw-------. 1 boinc boinc     21027 Oct  6 06:05 log.46376905._109888.job.log.tgz.1
[2025-10-06 06:08:06] -rw-------. 1 boinc boinc      8396 Oct  6 06:07 heartbeat.json
[2025-10-06 06:08:06] -rw-r--r--. 1 boinc boinc      8192 Oct  6 06:08 boinc_mmap_file
[2025-10-06 06:08:06] -rw-------. 1 boinc boinc       823 Oct  6 06:08 pilotlog.txt
[2025-10-06 06:08:06] -rw-------. 1 boinc boinc        95 Oct  6 06:08 pilot_heartbeat.json
[2025-10-06 06:08:06] -rw-r--r--. 1 boinc boinc        22 Oct  6 06:08 wrapper_checkpoint.txt
[2025-10-06 06:08:06] -rw-------. 1 boinc boinc     88965 Oct  6 06:08 log.46376905._109888.job.log.1
[2025-10-06 06:08:06] -rw-r--r--. 1 boinc boinc       524 Oct  6 06:08 boinc_task_state.xml
[2025-10-06 06:08:06] -rw-------. 1 boinc boinc       188 Oct  6 06:08 output.list
[2025-10-06 06:08:06] -rw-r--r--. 1 boinc boinc       620 Oct  6 06:08 runtime_log
[2025-10-06 06:08:06] -rw-------. 1 boinc boinc    133120 Oct  6 06:08 result.tar.gz
[2025-10-06 06:08:06] -rw-r--r--. 1 boinc boinc      8528 Oct  6 06:08 runtime_log.err
[2025-10-06 06:08:06] -rw-------. 1 boinc boinc       644 Oct  6 06:08 NwMMDmb2xP8n9Rq4apOajLDm4fhM0noT9bVof3QYDm82IMDmH8tGWm.diag
[2025-10-06 06:08:06] -rw-r--r--. 1 boinc boinc     21346 Oct  6 06:08 stderr.txt
[2025-10-06 06:08:06] No HITS result produced
[2025-10-06 06:08:06]  *** Contents of shared directory: ***
[2025-10-06 06:08:06] total 207620
[2025-10-06 06:08:06] -rw-r--r--. 2 boinc boinc 211873987 Oct  6 06:03 ATLAS.root_0
[2025-10-06 06:08:06] -rw-r--r--. 2 boinc boinc     15120 Oct  6 06:03 start_atlas.sh
[2025-10-06 06:08:06] -rw-r--r--. 2 boinc boinc    565603 Oct  6 06:03 input.tar.gz
[2025-10-06 06:08:06] -rw-------. 1 boinc boinc    133120 Oct  6 06:08 result.tar.gz
06:08:07 (3920083): run_atlas exited; CPU time 23.633765
06:08:07 (3920083): called boinc_finish(0)

</stderr_txt>
]]>

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