Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:31:21 (869373): wrapper (7.7.26015): starting
17:31:21 (869373): wrapper: running run_atlas (--nthreads 3)
[2025-10-06 17:31:21] Arguments: --nthreads 3
[2025-10-06 17:31:21] Threads: 3
[2025-10-06 17:31:21] Checking for CVMFS
[2025-10-06 17:31:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-06 17:31:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-06 17:31:21] Running cvmfs_config stat atlas.cern.ch
[2025-10-06 17:31:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-06 17:31:21] 2.9.2.0 778741 219 61032 151403 1 57 29011634 36864001 0 130560 0 241129 99.986 12143 1505 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-06 17:31:21] CVMFS is ok
[2025-10-06 17:31:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-06 17:31:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-06 17:31:21] Further information can be found at the LHC@home message board.
[2025-10-06 17:31:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-06 17:31:21] Checking for apptainer binary...
[2025-10-06 17:31:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-06 17:31:21] Running /usr/bin/apptainer --version
[2025-10-06 17:31:21] apptainer version 1.4.1-1.1
[2025-10-06 17:31:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-06 17:31:21] magicA246
[2025-10-06 17:31:21] apptainer works
[2025-10-06 17:31:21] Set ATHENA_PROC_NUMBER=3
[2025-10-06 17:31:21] Set ATHENA_CORE_NUMBER=3
[2025-10-06 17:31:21] Starting ATLAS job with PandaID=6831974184
[2025-10-06 17:31:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-06 18:41:39]  *** The last 200 lines of the pilot log: ***
[2025-10-06 18:41:39] 2025-10-06 16:40:39,440 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-06 18:41:39] 2025-10-06 16:40:39,441 | INFO     | did not find any defunct processes belonging to 879544
[2025-10-06 18:41:39] 2025-10-06 16:40:39,442 | INFO     | did not find any defunct processes belonging to 879544
[2025-10-06 18:41:39] 2025-10-06 16:40:39,442 | INFO     | ready for new job
[2025-10-06 18:41:39] 2025-10-06 16:40:39,442 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-06 18:41:39] 2025-10-06 16:40:39,443 | INFO     | ***************************************
[2025-10-06 18:41:39] 2025-10-06 16:40:39,443 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-06 18:41:39] 2025-10-06 16:40:39,443 | INFO     | ***************************************
[2025-10-06 18:41:39] 2025-10-06 16:40:39,443 | INFO     | 
[2025-10-06 18:41:39] 2025-10-06 16:40:39,443 | INFO     | architecture information:
[2025-10-06 18:41:39] 2025-10-06 16:40:39,444 | INFO     | executing command: cat /etc/os-release
[2025-10-06 18:41:39] 2025-10-06 16:40:39,453 | INFO     | cat /etc/os-release:
[2025-10-06 18:41:39] NAME="CentOS Linux"
[2025-10-06 18:41:39] VERSION="7 (Core)"
[2025-10-06 18:41:39] ID="centos"
[2025-10-06 18:41:39] ID_LIKE="rhel fedora"
[2025-10-06 18:41:39] VERSION_ID="7"
[2025-10-06 18:41:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-06 18:41:39] ANSI_COLOR="0;31"
[2025-10-06 18:41:39] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-06 18:41:39] HOME_URL="https://www.centos.org/"
[2025-10-06 18:41:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-06 18:41:39] 
[2025-10-06 18:41:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-06 18:41:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-06 18:41:39] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-06 18:41:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-06 18:41:39] 
[2025-10-06 18:41:39] 2025-10-06 16:40:39,453 | INFO     | ***************************************
[2025-10-06 18:41:39] 2025-10-06 16:40:39,956 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-06 18:41:39] 2025-10-06 16:40:39,970 | INFO     | sufficient remaining disk space (376620187648 B)
[2025-10-06 18:41:39] 2025-10-06 16:40:39,970 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-06 18:41:39] 2025-10-06 16:40:39,970 | INFO     | current server update state: UPDATING_FINAL
[2025-10-06 18:41:39] 2025-10-06 16:40:39,970 | INFO     | update_server=False
[2025-10-06 18:41:39] 2025-10-06 16:40:39,970 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-06 18:41:39] 2025-10-06 16:40:39,970 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-06 18:41:39] 2025-10-06 16:40:39,970 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-06 18:41:39] 2025-10-06 16:40:40,452 | INFO     | all data control threads have been joined
[2025-10-06 18:41:39] 2025-10-06 16:40:40,516 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-06 18:41:39] 2025-10-06 16:40:40,516 | INFO     | aborting loop
[2025-10-06 18:41:39] 2025-10-06 16:40:40,679 | INFO     | all job control threads have been joined
[2025-10-06 18:41:39] 2025-10-06 16:40:40,787 | INFO     | all payload control threads have been joined
[2025-10-06 18:41:39] 2025-10-06 16:40:40,976 | INFO     | [job] retrieve thread has finished
[2025-10-06 18:41:39] 2025-10-06 16:40:40,976 | INFO     | [job] queue monitor thread has finished
[2025-10-06 18:41:39] 2025-10-06 16:40:40,977 | INFO     | [job] create_data_payload thread has finished
[2025-10-06 18:41:39] 2025-10-06 16:40:41,030 | INFO     | [payload] validate_pre thread has finished
[2025-10-06 18:41:39] 2025-10-06 16:40:41,217 | INFO     | [payload] validate_post thread has finished
[2025-10-06 18:41:39] 2025-10-06 16:40:41,457 | INFO     | [data] control thread has finished
[2025-10-06 18:41:39] 2025-10-06 16:40:41,522 | INFO     | [job] job monitor thread has finished
[2025-10-06 18:41:39] 2025-10-06 16:40:41,658 | INFO     | [payload] execute_payloads thread has finished
[2025-10-06 18:41:39] 2025-10-06 16:40:41,685 | INFO     | [job] control thread has finished
[2025-10-06 18:41:39] 2025-10-06 16:40:41,793 | INFO     | [payload] control thread has finished
[2025-10-06 18:41:39] 2025-10-06 16:40:41,976 | INFO     | [data] copytool_out thread has finished
[2025-10-06 18:41:39] 2025-10-06 16:40:42,161 | INFO     | [data] copytool_in thread has finished
[2025-10-06 18:41:39] 2025-10-06 16:40:42,282 | INFO     | [payload] failed_post thread has finished
[2025-10-06 18:41:39] 2025-10-06 16:40:42,395 | INFO     | [job] validate thread has finished
[2025-10-06 18:41:39] 2025-10-06 16:40:43,317 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-06 18:41:39] 2025-10-06 16:40:47,324 | INFO     | [data] queue_monitor thread has finished
[2025-10-06 18:41:39] 2025-10-06 16:40:50,593 | INFO     | job.realtimelogging is not enabled
[2025-10-06 18:41:39] 2025-10-06 16:40:51,599 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-06 18:41:39] 2025-10-06 16:41:10,039 | INFO     | PID=873092 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-06 18:41:39] 2025-10-06 16:41:10,040 | INFO     | found 0 job(s) in 20 queues
[2025-10-06 18:41:39] 2025-10-06 16:41:10,040 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-06 18:41:39] 2025-10-06 16:41:10,040 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-06 18:41:39] 2025-10-06 16:41:34,077 | INFO     | [monitor] cgroup control has ended
[2025-10-06 18:41:39] 2025-10-06 16:41:34,496 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140639124903744)>', '<ExcThread(monitor, started 140638460815104)>']
[2025-10-06 18:41:39] 2025-10-06 16:41:35,164 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-06 18:41:39] 2025-10-06 16:41:35,164 | INFO     | [monitor] control thread has ended
[2025-10-06 18:41:39] 2025-10-06 16:41:39,522 | INFO     | all workflow threads have been joined
[2025-10-06 18:41:39] 2025-10-06 16:41:39,522 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-06 18:41:39] 2025-10-06 16:41:39,523 | INFO     | traces error code: 0
[2025-10-06 18:41:39] 2025-10-06 16:41:39,523 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-06 18:41:39] 2025-10-06 16:41:39,576 [wrapper] ==== pilot stdout END ====
[2025-10-06 18:41:39] 2025-10-06 16:41:39,579 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-06 18:41:39] 2025-10-06 16:41:39,581 [wrapper] pilotpid: 873092
[2025-10-06 18:41:39] 2025-10-06 16:41:39,584 [wrapper] Pilot exit status: 0
[2025-10-06 18:41:39] 2025-10-06 16:41:39,591 [wrapper] pandaids: 6831974184
[2025-10-06 18:41:39] 2025-10-06 16:41:39,610 [wrapper] cleanup supervisor_pilot  889072 873093
[2025-10-06 18:41:39] 2025-10-06 16:41:39,613 [wrapper] Test setup, not cleaning
[2025-10-06 18:41:39] 2025-10-06 16:41:39,616 [wrapper] apfmon messages muted
[2025-10-06 18:41:39] 2025-10-06 16:41:39,618 [wrapper] ==== wrapper stdout END ====
[2025-10-06 18:41:39] 2025-10-06 16:41:39,621 [wrapper] ==== wrapper stderr END ====
[2025-10-06 18:41:39]  *** Error codes and diagnostics ***
[2025-10-06 18:41:39]     "exeErrorCode": 0,
[2025-10-06 18:41:39]     "exeErrorDiag": "",
[2025-10-06 18:41:39]     "pilotErrorCode": 0,
[2025-10-06 18:41:39]     "pilotErrorDiag": "",
[2025-10-06 18:41:39]  *** Listing of results directory ***
[2025-10-06 18:41:39] total 384104
[2025-10-06 18:41:39] -rw-r--r-- 1 boinc boinc    552446 Oct  5 21:50 pilot3.tar.gz
[2025-10-06 18:41:39] -rw-r--r-- 1 boinc boinc      5112 Oct  5 22:21 queuedata.json
[2025-10-06 18:41:39] -rwx------ 1 boinc boinc     36292 Oct  5 22:21 runpilot2-wrapper.sh
[2025-10-06 18:41:39] -rw-r--r-- 1 boinc boinc       100 Oct  6 17:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-06 18:41:39] -rwxr-xr-x 1 boinc boinc      7986 Oct  6 17:31 run_atlas
[2025-10-06 18:41:39] -rw-r--r-- 1 boinc boinc       105 Oct  6 17:31 job.xml
[2025-10-06 18:41:39] -rw-r--r-- 2 boinc boinc 215554539 Oct  6 17:31 EVNT.46376901._003504.pool.root.1
[2025-10-06 18:41:39] -rw-r--r-- 2 boinc boinc    565603 Oct  6 17:31 input.tar.gz
[2025-10-06 18:41:39] -rw-r--r-- 2 boinc boinc     15120 Oct  6 17:31 start_atlas.sh
[2025-10-06 18:41:39] drwxrwx--x 2 boinc boinc      4096 Oct  6 17:31 shared
[2025-10-06 18:41:39] -rw-r--r-- 1 boinc boinc         0 Oct  6 17:31 boinc_setup_complete
[2025-10-06 18:41:39] -rw-r--r-- 1 boinc boinc      6448 Oct  6 17:31 init_data.xml
[2025-10-06 18:41:39] -rw-r--r-- 1 boinc boinc         0 Oct  6 17:31 boinc_lockfile
[2025-10-06 18:41:39] -rw-r--r-- 1 boinc boinc      2519 Oct  6 17:31 pandaJob.out
[2025-10-06 18:41:39] -rw------- 1 boinc boinc    975002 Oct  6 17:31 agis_schedconf.cvmfs.json
[2025-10-06 18:41:39] -rw------- 1 boinc boinc   1560401 Oct  6 17:31 agis_ddmendpoints.agis.ALL.json
[2025-10-06 18:41:39] drwx------ 4 boinc boinc      4096 Oct  6 17:31 pilot3
[2025-10-06 18:41:39] -rw------- 1 boinc boinc 172184451 Oct  6 18:40 HITS.46376905._095075.pool.root.1
[2025-10-06 18:41:39] -rw-r--r-- 1 boinc boinc       529 Oct  6 18:40 boinc_task_state.xml
[2025-10-06 18:41:39] -rw------- 1 boinc boinc      1017 Oct  6 18:40 memory_monitor_summary.json
[2025-10-06 18:41:39] -rw------- 1 boinc boinc    233903 Oct  6 18:40 log.46376905._095075.job.log.tgz.1
[2025-10-06 18:41:39] -rw------- 1 boinc boinc      7756 Oct  6 18:40 heartbeat.json
[2025-10-06 18:41:39] -rw------- 1 boinc boinc        95 Oct  6 18:41 pilot_heartbeat.json
[2025-10-06 18:41:39] -rw-r--r-- 1 boinc boinc      8192 Oct  6 18:41 boinc_mmap_file
[2025-10-06 18:41:39] -rw-r--r-- 1 boinc boinc        27 Oct  6 18:41 wrapper_checkpoint.txt
[2025-10-06 18:41:39] -rw------- 1 boinc boinc      4823 Oct  6 18:41 pilotlog.txt
[2025-10-06 18:41:39] -rw------- 1 boinc boinc    614750 Oct  6 18:41 log.46376905._095075.job.log.1
[2025-10-06 18:41:39] -rw------- 1 boinc boinc       357 Oct  6 18:41 output.list
[2025-10-06 18:41:39] -rw-r--r-- 1 boinc boinc       620 Oct  6 18:41 runtime_log
[2025-10-06 18:41:39] -rw------- 1 boinc boinc    870400 Oct  6 18:41 result.tar.gz
[2025-10-06 18:41:39] -rw-r--r-- 1 boinc boinc      8792 Oct  6 18:41 runtime_log.err
[2025-10-06 18:41:39] -rw------- 1 boinc boinc       661 Oct  6 18:41 GQYLDmxPkP8n9Rq4apOajLDm4fhM0noT9bVof3QYDmTRHMDmF5n7Hn.diag
[2025-10-06 18:41:39] -rw-r--r-- 1 boinc boinc      9949 Oct  6 18:41 stderr.txt
[2025-10-06 18:41:39] HITS file was successfully produced:
[2025-10-06 18:41:39] -rw------- 1 boinc boinc 172184451 Oct  6 18:40 shared/HITS.pool.root.1
[2025-10-06 18:41:39]  *** Contents of shared directory: ***
[2025-10-06 18:41:39] total 380088
[2025-10-06 18:41:39] -rw-r--r-- 2 boinc boinc 215554539 Oct  6 17:31 ATLAS.root_0
[2025-10-06 18:41:39] -rw-r--r-- 2 boinc boinc    565603 Oct  6 17:31 input.tar.gz
[2025-10-06 18:41:39] -rw-r--r-- 2 boinc boinc     15120 Oct  6 17:31 start_atlas.sh
[2025-10-06 18:41:39] -rw------- 1 boinc boinc 172184451 Oct  6 18:40 HITS.pool.root.1
[2025-10-06 18:41:39] -rw------- 1 boinc boinc    870400 Oct  6 18:41 result.tar.gz
18:41:41 (869373): run_atlas exited; CPU time 11772.276733
18:41:41 (869373): called boinc_finish(0)

</stderr_txt>
]]>

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