Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:33:24 (1097118): wrapper (7.7.26015): starting
19:33:24 (1097118): wrapper: running run_atlas (--nthreads 3)
[2025-10-06 19:33:24] Arguments: --nthreads 3
[2025-10-06 19:33:24] Threads: 3
[2025-10-06 19:33:24] Checking for CVMFS
[2025-10-06 19:33:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-06 19:33:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-06 19:33:25] Running cvmfs_config stat atlas.cern.ch
[2025-10-06 19:33:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-06 19:33:25] 2.9.2.0 967898 341 57488 151406 3 57 1821699 36864000 0 130560 0 298133 99.986 15986 910 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-06 19:33:25] CVMFS is ok
[2025-10-06 19:33:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-06 19:33:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-06 19:33:25] Further information can be found at the LHC@home message board.
[2025-10-06 19:33:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-06 19:33:25] Checking for apptainer binary...
[2025-10-06 19:33:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-06 19:33:25] Running /usr/bin/apptainer --version
[2025-10-06 19:33:25] apptainer version 1.4.1-1.1
[2025-10-06 19:33:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-06 19:33:25] atlasA221b
[2025-10-06 19:33:25] apptainer works
[2025-10-06 19:33:25] Set ATHENA_PROC_NUMBER=3
[2025-10-06 19:33:25] Set ATHENA_CORE_NUMBER=3
[2025-10-06 19:33:25] Starting ATLAS job with PandaID=6832259572
[2025-10-06 19:33:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-06 20:57:46]  *** The last 200 lines of the pilot log: ***
[2025-10-06 20:57:46] 2025-10-06 18:56:48,964 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-06 20:57:46] 2025-10-06 18:56:48,964 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-06 20:57:46] 2025-10-06 18:56:48,964 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-06 20:57:46] 2025-10-06 18:56:48,964 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-06 20:57:46] 2025-10-06 18:56:48,964 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-06 20:57:46] 2025-10-06 18:56:48,964 | INFO     | job 6832259572 has completed (purged errors)
[2025-10-06 20:57:46] 2025-10-06 18:56:48,964 | INFO     | overall cleanup function is called
[2025-10-06 20:57:46] 2025-10-06 18:56:49,970 | INFO     | --- collectZombieJob: --- 10, [1107318]
[2025-10-06 20:57:46] 2025-10-06 18:56:49,971 | INFO     | zombie collector waiting for pid 1107318
[2025-10-06 20:57:46] 2025-10-06 18:56:49,971 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-06 20:57:46] 2025-10-06 18:56:49,971 | INFO     | collected zombie processes
[2025-10-06 20:57:46] 2025-10-06 18:56:49,971 | INFO     | will attempt to kill all subprocesses of pid=1107318
[2025-10-06 20:57:46] 2025-10-06 18:56:50,081 | INFO     | process IDs to be killed: [1107318] (in reverse order)
[2025-10-06 20:57:46] 2025-10-06 18:56:50,110 | WARNING  | found no corresponding commands to process id(s)
[2025-10-06 20:57:46] 2025-10-06 18:56:50,110 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-06 20:57:46] 2025-10-06 18:56:50,122 | INFO     | did not find any defunct processes belonging to 1107318
[2025-10-06 20:57:46] 2025-10-06 18:56:50,128 | INFO     | did not find any defunct processes belonging to 1107318
[2025-10-06 20:57:46] 2025-10-06 18:56:50,128 | INFO     | ready for new job
[2025-10-06 20:57:46] 2025-10-06 18:56:50,129 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-06 20:57:46] 2025-10-06 18:56:50,138 | INFO     | ***************************************
[2025-10-06 20:57:46] 2025-10-06 18:56:50,139 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-06 20:57:46] 2025-10-06 18:56:50,139 | INFO     | ***************************************
[2025-10-06 20:57:46] 2025-10-06 18:56:50,139 | INFO     | 
[2025-10-06 20:57:46] 2025-10-06 18:56:50,140 | INFO     | architecture information:
[2025-10-06 20:57:46] 2025-10-06 18:56:50,140 | INFO     | executing command: cat /etc/os-release
[2025-10-06 20:57:46] 2025-10-06 18:56:50,150 | INFO     | cat /etc/os-release:
[2025-10-06 20:57:46] NAME="CentOS Linux"
[2025-10-06 20:57:46] VERSION="7 (Core)"
[2025-10-06 20:57:46] ID="centos"
[2025-10-06 20:57:46] ID_LIKE="rhel fedora"
[2025-10-06 20:57:46] VERSION_ID="7"
[2025-10-06 20:57:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-06 20:57:46] ANSI_COLOR="0;31"
[2025-10-06 20:57:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-06 20:57:46] HOME_URL="https://www.centos.org/"
[2025-10-06 20:57:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-06 20:57:46] 
[2025-10-06 20:57:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-06 20:57:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-06 20:57:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-06 20:57:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-06 20:57:46] 
[2025-10-06 20:57:46] 2025-10-06 18:56:50,150 | INFO     | ***************************************
[2025-10-06 20:57:46] 2025-10-06 18:56:50,652 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-06 20:57:46] 2025-10-06 18:56:50,666 | INFO     | sufficient remaining disk space (359209631744 B)
[2025-10-06 20:57:46] 2025-10-06 18:56:50,666 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-06 20:57:46] 2025-10-06 18:56:50,666 | INFO     | current server update state: UPDATING_FINAL
[2025-10-06 20:57:46] 2025-10-06 18:56:50,666 | INFO     | update_server=False
[2025-10-06 20:57:46] 2025-10-06 18:56:50,666 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-06 20:57:46] 2025-10-06 18:56:50,666 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-06 20:57:46] 2025-10-06 18:56:50,938 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-06 20:57:46] 2025-10-06 18:56:50,938 | INFO     | aborting loop
[2025-10-06 20:57:46] 2025-10-06 18:56:50,978 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-06 20:57:46] 2025-10-06 18:56:51,106 | INFO     | all data control threads have been joined
[2025-10-06 20:57:46] 2025-10-06 18:56:51,171 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-06 20:57:46] 2025-10-06 18:56:51,377 | INFO     | all payload control threads have been joined
[2025-10-06 20:57:46] 2025-10-06 18:56:51,671 | INFO     | [job] retrieve thread has finished
[2025-10-06 20:57:46] 2025-10-06 18:56:51,672 | INFO     | [job] queue monitor thread has finished
[2025-10-06 20:57:46] 2025-10-06 18:56:51,770 | INFO     | all job control threads have been joined
[2025-10-06 20:57:46] 2025-10-06 18:56:51,943 | INFO     | [job] job monitor thread has finished
[2025-10-06 20:57:46] 2025-10-06 18:56:52,089 | INFO     | [job] validate thread has finished
[2025-10-06 20:57:46] 2025-10-06 18:56:52,111 | INFO     | [data] control thread has finished
[2025-10-06 20:57:46] 2025-10-06 18:56:52,290 | INFO     | [job] create_data_payload thread has finished
[2025-10-06 20:57:46] 2025-10-06 18:56:52,294 | INFO     | [payload] validate_pre thread has finished
[2025-10-06 20:57:46] 2025-10-06 18:56:52,368 | INFO     | [payload] validate_post thread has finished
[2025-10-06 20:57:46] 2025-10-06 18:56:52,382 | INFO     | [payload] control thread has finished
[2025-10-06 20:57:46] 2025-10-06 18:56:52,669 | INFO     | [data] copytool_in thread has finished
[2025-10-06 20:57:46] 2025-10-06 18:56:52,776 | INFO     | [job] control thread has finished
[2025-10-06 20:57:46] 2025-10-06 18:56:52,829 | INFO     | [payload] failed_post thread has finished
[2025-10-06 20:57:46] 2025-10-06 18:56:52,984 | INFO     | [data] copytool_out thread has finished
[2025-10-06 20:57:46] 2025-10-06 18:56:53,134 | INFO     | [payload] execute_payloads thread has finished
[2025-10-06 20:57:46] 2025-10-06 18:56:55,178 | INFO     | [data] queue_monitor thread has finished
[2025-10-06 20:57:46] 2025-10-06 18:57:01,718 | INFO     | job.realtimelogging is not enabled
[2025-10-06 20:57:46] 2025-10-06 18:57:02,724 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-06 20:57:46] 2025-10-06 18:57:20,732 | INFO     | PID=1100862 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-06 20:57:46] 2025-10-06 18:57:20,732 | INFO     | found 0 job(s) in 20 queues
[2025-10-06 20:57:46] 2025-10-06 18:57:20,732 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-06 20:57:46] 2025-10-06 18:57:20,732 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-06 20:57:46] 2025-10-06 18:57:41,009 | INFO     | [monitor] cgroup control has ended
[2025-10-06 20:57:46] 2025-10-06 18:57:41,350 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139993970050880)>', '<ExcThread(monitor, started 139993032939264)>']
[2025-10-06 20:57:46] 2025-10-06 18:57:41,842 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-06 20:57:46] 2025-10-06 18:57:41,842 | INFO     | [monitor] control thread has ended
[2025-10-06 20:57:46] 2025-10-06 18:57:46,375 | INFO     | all workflow threads have been joined
[2025-10-06 20:57:46] 2025-10-06 18:57:46,376 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-06 20:57:46] 2025-10-06 18:57:46,376 | INFO     | traces error code: 0
[2025-10-06 20:57:46] 2025-10-06 18:57:46,376 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-06 20:57:46] 2025-10-06 18:57:46,425 [wrapper] ==== pilot stdout END ====
[2025-10-06 20:57:46] 2025-10-06 18:57:46,428 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-06 20:57:46] 2025-10-06 18:57:46,431 [wrapper] pilotpid: 1100862
[2025-10-06 20:57:46] 2025-10-06 18:57:46,434 [wrapper] Pilot exit status: 0
[2025-10-06 20:57:46] 2025-10-06 18:57:46,443 [wrapper] pandaids: 6832259572
[2025-10-06 20:57:46] 2025-10-06 18:57:46,461 [wrapper] cleanup supervisor_pilot 1123164 1100863
[2025-10-06 20:57:46] 2025-10-06 18:57:46,464 [wrapper] Test setup, not cleaning
[2025-10-06 20:57:46] 2025-10-06 18:57:46,467 [wrapper] apfmon messages muted
[2025-10-06 20:57:46] 2025-10-06 18:57:46,469 [wrapper] ==== wrapper stdout END ====
[2025-10-06 20:57:46] 2025-10-06 18:57:46,472 [wrapper] ==== wrapper stderr END ====
[2025-10-06 20:57:46]  *** Error codes and diagnostics ***
[2025-10-06 20:57:46]     "exeErrorCode": 0,
[2025-10-06 20:57:46]     "exeErrorDiag": "",
[2025-10-06 20:57:46]     "pilotErrorCode": 0,
[2025-10-06 20:57:46]     "pilotErrorDiag": "",
[2025-10-06 20:57:46]  *** Listing of results directory ***
[2025-10-06 20:57:46] total 391744
[2025-10-06 20:57:46] -rw-r--r-- 1 boinc boinc    552446 Oct  6 04:53 pilot3.tar.gz
[2025-10-06 20:57:46] -rwx------ 1 boinc boinc     36292 Oct  6 04:55 runpilot2-wrapper.sh
[2025-10-06 20:57:46] -rw-r--r-- 1 boinc boinc      5112 Oct  6 04:55 queuedata.json
[2025-10-06 20:57:46] -rw-r--r-- 1 boinc boinc       100 Oct  6 19:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-06 20:57:46] -rwxr-xr-x 1 boinc boinc      7986 Oct  6 19:33 run_atlas
[2025-10-06 20:57:46] -rw-r--r-- 1 boinc boinc       105 Oct  6 19:33 job.xml
[2025-10-06 20:57:46] -rw-r--r-- 2 boinc boinc 214917256 Oct  6 19:33 EVNT.46376901._003835.pool.root.1
[2025-10-06 20:57:46] -rw-r--r-- 2 boinc boinc    565595 Oct  6 19:33 input.tar.gz
[2025-10-06 20:57:46] -rw-r--r-- 2 boinc boinc     15120 Oct  6 19:33 start_atlas.sh
[2025-10-06 20:57:46] drwxrwx--x 2 boinc boinc      4096 Oct  6 19:33 shared
[2025-10-06 20:57:46] -rw-r--r-- 1 boinc boinc         0 Oct  6 19:33 boinc_setup_complete
[2025-10-06 20:57:46] -rw-r--r-- 1 boinc boinc      6199 Oct  6 19:33 init_data.xml
[2025-10-06 20:57:46] -rw-r--r-- 1 boinc boinc         0 Oct  6 19:33 boinc_lockfile
[2025-10-06 20:57:46] -rw-r--r-- 1 boinc boinc      2519 Oct  6 19:33 pandaJob.out
[2025-10-06 20:57:46] -rw------- 1 boinc boinc    975018 Oct  6 19:33 agis_schedconf.cvmfs.json
[2025-10-06 20:57:46] -rw------- 1 boinc boinc   1560401 Oct  6 19:33 agis_ddmendpoints.agis.ALL.json
[2025-10-06 20:57:46] drwx------ 4 boinc boinc      4096 Oct  6 19:33 pilot3
[2025-10-06 20:57:46] -rw------- 1 boinc boinc 180381114 Oct  6 20:56 HITS.46376905._103608.pool.root.1
[2025-10-06 20:57:46] -rw-r--r-- 1 boinc boinc       529 Oct  6 20:56 boinc_task_state.xml
[2025-10-06 20:57:46] -rw------- 1 boinc boinc      1020 Oct  6 20:56 memory_monitor_summary.json
[2025-10-06 20:57:46] -rw------- 1 boinc boinc    258874 Oct  6 20:56 log.46376905._103608.job.log.tgz.1
[2025-10-06 20:57:46] -rw------- 1 boinc boinc      7769 Oct  6 20:56 heartbeat.json
[2025-10-06 20:57:46] -rw------- 1 boinc boinc        95 Oct  6 20:57 pilot_heartbeat.json
[2025-10-06 20:57:46] -rw-r--r-- 1 boinc boinc        27 Oct  6 20:57 wrapper_checkpoint.txt
[2025-10-06 20:57:46] -rw-r--r-- 1 boinc boinc      8192 Oct  6 20:57 boinc_mmap_file
[2025-10-06 20:57:46] -rw------- 1 boinc boinc      4824 Oct  6 20:57 pilotlog.txt
[2025-10-06 20:57:46] -rw------- 1 boinc boinc    728482 Oct  6 20:57 log.46376905._103608.job.log.1
[2025-10-06 20:57:46] -rw------- 1 boinc boinc       357 Oct  6 20:57 output.list
[2025-10-06 20:57:46] -rw-r--r-- 1 boinc boinc       620 Oct  6 20:57 runtime_log
[2025-10-06 20:57:46] -rw------- 1 boinc boinc   1003520 Oct  6 20:57 result.tar.gz
[2025-10-06 20:57:46] -rw-r--r-- 1 boinc boinc      8797 Oct  6 20:57 runtime_log.err
[2025-10-06 20:57:46] -rw------- 1 boinc boinc       662 Oct  6 20:57 65zLDmVYqP8n9Rq4apOajLDm4fhM0noT9bVof3QYDmAMIMDmpRH5Oo.diag
[2025-10-06 20:57:46] -rw-r--r-- 1 boinc boinc     11408 Oct  6 20:57 stderr.txt
[2025-10-06 20:57:46] HITS file was successfully produced:
[2025-10-06 20:57:46] -rw------- 1 boinc boinc 180381114 Oct  6 20:56 shared/HITS.pool.root.1
[2025-10-06 20:57:46]  *** Contents of shared directory: ***
[2025-10-06 20:57:46] total 387596
[2025-10-06 20:57:46] -rw-r--r-- 2 boinc boinc 214917256 Oct  6 19:33 ATLAS.root_0
[2025-10-06 20:57:46] -rw-r--r-- 2 boinc boinc    565595 Oct  6 19:33 input.tar.gz
[2025-10-06 20:57:46] -rw-r--r-- 2 boinc boinc     15120 Oct  6 19:33 start_atlas.sh
[2025-10-06 20:57:46] -rw------- 1 boinc boinc 180381114 Oct  6 20:56 HITS.pool.root.1
[2025-10-06 20:57:46] -rw------- 1 boinc boinc   1003520 Oct  6 20:57 result.tar.gz
20:57:47 (1097118): run_atlas exited; CPU time 14269.860642
20:57:47 (1097118): called boinc_finish(0)

</stderr_txt>
]]>

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