Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-06 22:01:36 (22508): vboxwrapper version 26210
2025-10-06 22:01:36 (22508): BOINC client version: 8.2.4
2025-10-06 22:01:37 (22508): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-10-06 22:01:37 (22508): Successfully copied 'init_data.xml' to the shared directory.
2025-10-06 22:01:37 (22508): Create VM. (boinc_6197c840100883ac, slot#1)
2025-10-06 22:01:38 (22508): Setting Memory Size for VM. (4300MB)
2025-10-06 22:01:38 (22508): Setting CPU Count for VM. (3)
2025-10-06 22:01:38 (22508): Setting Chipset Options for VM.
2025-10-06 22:01:39 (22508): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-06 22:01:39 (22508): Setting Boot Options for VM.
2025-10-06 22:01:39 (22508): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-06 22:01:40 (22508): Enabling VM Network Access.
2025-10-06 22:01:40 (22508): Disabling USB Support for VM.
2025-10-06 22:01:40 (22508): Disabling COM Port Support for VM.
2025-10-06 22:01:40 (22508): Disabling LPT Port Support for VM.
2025-10-06 22:01:41 (22508): Disabling Audio Support for VM.
2025-10-06 22:01:41 (22508): Disabling Clipboard Support for VM.
2025-10-06 22:01:41 (22508): Disabling Drag and Drop Support for VM.
2025-10-06 22:01:41 (22508): Adding storage controller(s) to VM.
2025-10-06 22:01:42 (22508): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-06 22:01:44 (22508): Adding VirtualBox Guest Additions to VM.
2025-10-06 22:01:44 (22508): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-06 22:01:44 (22508): forwarding host port 59707 to guest port 80
2025-10-06 22:01:45 (22508): Enabling remote desktop for VM.
2025-10-06 22:01:45 (22508): Required extension pack not installed, remote desktop not enabled.
2025-10-06 22:01:45 (22508): Enabling shared directory for VM.
2025-10-06 22:01:45 (22508): Starting VM using VBoxManage interface. (boinc_6197c840100883ac, slot#1)
2025-10-06 22:01:50 (22508): Successfully started VM. (PID = '21872')
2025-10-06 22:01:50 (22508): Reporting VM Process ID to BOINC.
2025-10-06 22:01:50 (22508): Guest Log: BIOS: VirtualBox 7.1.6
2025-10-06 22:01:50 (22508): Guest Log: CPUID EDX: 0x178bfbff
2025-10-06 22:01:50 (22508): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-06 22:01:50 (22508): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-06 22:01:50 (22508): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-06 22:01:50 (22508): Detected: Web Application Enabled (http://localhost:59707)
2025-10-06 22:01:50 (22508): Preference change detected
2025-10-06 22:01:50 (22508): Setting CPU throttle for VM. (60%)
2025-10-06 22:01:50 (22508): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-06 22:01:52 (22508): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-06 22:01:52 (22508): Guest Log: BIOS: Booting from Hard Disk...
2025-10-06 22:01:55 (22508): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-06 22:01:55 (22508): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-06 22:01:55 (22508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-06 22:01:55 (22508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-06 22:01:55 (22508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-06 22:01:55 (22508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-06 22:01:55 (22508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-06 22:01:55 (22508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-06 22:01:55 (22508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-06 22:01:55 (22508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-06 22:01:55 (22508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-06 22:01:55 (22508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-06 22:01:55 (22508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-06 22:01:55 (22508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-06 22:01:55 (22508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-06 22:01:55 (22508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-06 22:01:55 (22508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-06 22:01:55 (22508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-06 22:01:55 (22508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-06 22:01:55 (22508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-06 22:01:55 (22508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-06 22:01:55 (22508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-06 22:01:55 (22508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-06 22:01:55 (22508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-06 22:01:55 (22508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-06 22:01:55 (22508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-06 22:01:55 (22508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-06 22:01:55 (22508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-06 22:01:55 (22508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-06 22:01:55 (22508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-06 22:01:55 (22508): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-06 22:01:55 (22508): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-06 22:02:03 (22508): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-06 22:02:03 (22508): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-06 22:02:10 (22508): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-06 22:02:10 (22508): Guest Log: 00:00:00.000165 main     Log opened 2025-10-06T22:02:08.881043000Z
2025-10-06 22:02:10 (22508): Guest Log: 00:00:00.000241 main     OS Product: Linux
2025-10-06 22:02:10 (22508): Guest Log: 00:00:00.000261 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-06 22:02:10 (22508): Guest Log: 00:00:00.000278 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-06 22:02:10 (22508): Guest Log: 00:00:00.000294 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-06 22:02:10 (22508): Guest Log: 00:00:00.000295 main     Process ID: 1297
2025-10-06 22:02:10 (22508): Guest Log: 00:00:00.000295 main     Package type: LINUX_64BITS_GENERIC
2025-10-06 22:02:10 (22508): Guest Log: 00:00:00.001029 main     5.2.32 r132073 started. Verbose level = 0
2025-10-06 22:02:10 (22508): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-06 22:02:10 (22508): Guest Log: [INFO] Mounting shared directory
2025-10-06 22:02:10 (22508): Guest Log: [INFO] Checking for init_data.xml
2025-10-06 22:02:15 (22508): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-06 22:02:15 (22508): Guest Log: [INFO] Detected branch: prod
2025-10-06 22:02:15 (22508): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-06 22:02:15 (22508): Guest Log: Copying input files
2025-10-06 22:02:16 (22508): Guest Log: Copied input files into RunAtlas.
2025-10-06 22:02:16 (22508): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-06 22:02:16 (22508): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-06 22:02:16 (22508): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-06 22:02:16 (22508): Guest Log: Further information can be found at the LHC@home message board.
2025-10-06 22:02:20 (22508): Guest Log: 00:00:10.002451 timesync vgsvcTimeSyncWorker: Radical guest time change: -32 388 443 542 000ns (GuestNow=1 759 755 740 439 374 000 ns GuestLast=1 759 788 128 882 916 000 ns fSetTimeLastLoop=true )
2025-10-06 22:02:28 (22508): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-06 22:02:29 (22508): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-06 22:02:29 (22508): Guest Log: 2.6.3.0 1572 0 32164 151398 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-06 22:02:30 (22508): Guest Log: copied the webapp to /var/www
2025-10-06 22:02:30 (22508): Guest Log: ATHENA_PROC_NUMBER=3
2025-10-06 22:02:30 (22508): Guest Log: ATHENA_CORE_NUMBER=3
2025-10-06 22:02:30 (22508): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-06 22:02:30 (22508): Guest Log:  *** Starting ATLAS job. (PandaID=6832338612 taskID=46376905) ***
2025-10-06 22:34:50 (22508): VM state change detected. (old = 'running', new = 'paused')
2025-10-06 22:35:10 (22508): VM state change detected. (old = 'paused', new = 'running')
2025-10-06 22:44:21 (22508): VM state change detected. (old = 'running', new = 'paused')
2025-10-06 22:44:41 (22508): VM state change detected. (old = 'paused', new = 'running')
2025-10-06 23:42:35 (22508): Status Report: Elapsed Time: '6000.000000'
2025-10-06 23:42:35 (22508): Status Report: CPU Time: '10127.640625'
2025-10-06 23:44:36 (22508): VM state change detected. (old = 'running', new = 'paused')
2025-10-06 23:44:56 (22508): VM state change detected. (old = 'paused', new = 'running')
2025-10-07 00:44:41 (22508): VM state change detected. (old = 'running', new = 'paused')
2025-10-07 00:45:01 (22508): VM state change detected. (old = 'paused', new = 'running')
2025-10-07 00:54:11 (22508): VM state change detected. (old = 'running', new = 'paused')
2025-10-07 00:54:31 (22508): VM state change detected. (old = 'paused', new = 'running')
2025-10-07 01:04:36 (22508): Guest Log:  *** Job finished ***
2025-10-07 01:04:36 (22508): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-07 01:04:36 (22508): Guest Log: 2025-10-06 16:02:41,160 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-07 01:04:36 (22508): Guest Log: 2025-10-06 16:02:41,160 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-07 01:04:36 (22508): Guest Log: 2025-10-06 16:02:52,137 | INFO     | [monitor] cgroup control has ended
2025-10-07 01:04:36 (22508): Guest Log: 2025-10-06 16:02:52,860 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139931135592256)>', '<ExcThread(monitor, started 139930395191040)>']
2025-10-07 01:04:36 (22508): Guest Log: 2025-10-06 16:02:53,200 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-07 01:04:36 (22508): Guest Log: 2025-10-06 16:02:53,200 | INFO     | [monitor] control thread has ended
2025-10-07 01:04:36 (22508): Guest Log: 2025-10-06 16:02:57,865 | INFO     | all workflow threads have been joined
2025-10-07 01:04:36 (22508): Guest Log: 2025-10-06 16:02:57,865 | INFO     | end of generic workflow (traces error code: 0)
2025-10-07 01:04:36 (22508): Guest Log: 2025-10-06 16:02:57,865 | INFO     | traces error code: 0
2025-10-07 01:04:36 (22508): Guest Log: 2025-10-06 16:02:57,865 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-07 01:04:36 (22508): Guest Log: 2025-10-06 16:02:57,979 [wrapper] ==== pilot stdout END ====
2025-10-07 01:04:36 (22508): Guest Log: 2025-10-06 16:02:57,982 [wrapper] ==== wrapper stdout RESUME ====
2025-10-07 01:04:36 (22508): Guest Log: 2025-10-06 16:02:57,986 [wrapper] pilotpid: 5956
2025-10-07 01:04:36 (22508): Guest Log: 2025-10-06 16:02:57,989 [wrapper] Pilot exit status: 0
2025-10-07 01:04:36 (22508): Guest Log: 2025-10-06 16:02:58,066 [wrapper] pandaids: 6832338612
2025-10-07 01:04:36 (22508): Guest Log: 2025-10-06 16:02:58,086 [wrapper] cleanup supervisor_pilot  6183 5957
2025-10-07 01:04:36 (22508): Guest Log: 2025-10-06 16:02:58,089 [wrapper] Test setup, not cleaning
2025-10-07 01:04:36 (22508): Guest Log: 2025-10-06 16:02:58,093 [wrapper] apfmon messages muted
2025-10-07 01:04:36 (22508): Guest Log: 2025-10-06 16:02:58,097 [wrapper] ==== wrapper stdout END ====
2025-10-07 01:04:36 (22508): Guest Log: 2025-10-06 16:02:58,100 [wrapper] ==== wrapper stderr END ====
2025-10-07 01:04:36 (22508): Guest Log:  *** Error codes and diagnostics ***
2025-10-07 01:04:36 (22508): Guest Log:     "exeErrorCode": 0,
2025-10-07 01:04:36 (22508): Guest Log:     "exeErrorDiag": "",
2025-10-07 01:04:36 (22508): Guest Log:     "pilotErrorCode": 0,
2025-10-07 01:04:36 (22508): Guest Log:     "pilotErrorDiag": "",
2025-10-07 01:04:36 (22508): Guest Log:  *** Listing of results directory ***
2025-10-07 01:04:36 (22508): Guest Log: total 173432
2025-10-07 01:04:36 (22508): Guest Log: -rw-r--r--. 1 atlas atlas    552446 Oct  6 04:54 pilot3.tar.gz
2025-10-07 01:04:36 (22508): Guest Log: -rwx------. 1 atlas atlas     36292 Oct  6 04:59 runpilot2-wrapper.sh
2025-10-07 01:04:36 (22508): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct  6 04:59 queuedata.json
2025-10-07 01:04:36 (22508): Guest Log: -rwxr-xr-x. 1 atlas atlas      8604 Oct  6 13:02 init_data.xml
2025-10-07 01:04:36 (22508): Guest Log: -rwxr-xr-x. 1 atlas atlas    565601 Oct  6 13:02 input.tar.gz
2025-10-07 01:04:36 (22508): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct  6 13:02 start_atlas.sh
2025-10-07 01:04:36 (22508): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct  6 13:02 EVNT.46376901._003922.pool.root.1 -> /data/./ATLAS.root_0
2025-10-07 01:04:36 (22508): Guest Log: -rw-r--r--. 1 atlas atlas      2518 Oct  6 13:02 pandaJob.out
2025-10-07 01:04:36 (22508): Guest Log: -rw-------. 1 atlas atlas    975008 Oct  6 13:03 agis_schedconf.cvmfs.json
2025-10-07 01:04:36 (22508): Guest Log: -rw-------. 1 atlas atlas   1560401 Oct  6 13:03 agis_ddmendpoints.agis.ALL.json
2025-10-07 01:04:36 (22508): Guest Log: drwx------. 4 atlas atlas      4096 Oct  6 13:03 pilot3
2025-10-07 01:04:36 (22508): Guest Log: -rw-------. 1 atlas atlas 170392842 Oct  6 16:01 HITS.46376905._105869.pool.root.1
2025-10-07 01:04:36 (22508): Guest Log: -rw-------. 1 atlas atlas      1024 Oct  6 16:01 memory_monitor_summary.json
2025-10-07 01:04:36 (22508): Guest Log: -rw-------. 1 atlas atlas    331145 Oct  6 16:02 log.46376905._105869.job.log.tgz.1
2025-10-07 01:04:36 (22508): Guest Log: -rw-------. 1 atlas atlas      7753 Oct  6 16:02 heartbeat.json
2025-10-07 01:04:36 (22508): Guest Log: -rw-------. 1 atlas atlas        95 Oct  6 16:02 pilot_heartbeat.json
2025-10-07 01:04:36 (22508): Guest Log: -rw-------. 1 atlas atlas      4877 Oct  6 16:02 pilotlog.txt
2025-10-07 01:04:36 (22508): Guest Log: -rw-------. 1 atlas atlas   1360373 Oct  6 16:02 log.46376905._105869.job.log.1
2025-10-07 01:04:36 (22508): Guest Log: -rw-------. 1 atlas atlas       357 Oct  6 16:02 output.list
2025-10-07 01:04:36 (22508): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct  6 16:02 runtime_log
2025-10-07 01:04:36 (22508): Guest Log: -rw-------. 1 atlas atlas   1710080 Oct  6 16:02 result.tar.gz
2025-10-07 01:04:36 (22508): Guest Log: -rw-------. 1 atlas atlas       669 Oct  6 16:02 ZsjNDmgUsP8n9Rq4apOajLDm4fhM0noT9bVof3QYDm2YIMDm1YnhOo.diag
2025-10-07 01:04:36 (22508): Guest Log: -rw-r--r--. 1 atlas atlas      8666 Oct  6 16:02 runtime_log.err
2025-10-07 01:04:36 (22508): Guest Log: Looking for outputfile HITS.46376905._105869.pool.root.1
2025-10-07 01:04:36 (22508): Guest Log: HITS file was successfully produced
2025-10-07 01:04:36 (22508): Guest Log: -rw-------. 1 atlas atlas 170392842 Oct  6 16:01 /home/atlas/RunAtlas/HITS.46376905._105869.pool.root.1
2025-10-07 01:04:37 (22508): Guest Log: Successfully finished the ATLAS job!
2025-10-07 01:04:37 (22508): Guest Log: Copying the results back to the shared directory!
2025-10-07 01:04:37 (22508): Guest Log:  *** Contents of shared directory: ***
2025-10-07 01:04:37 (22508): Guest Log: total 376188
2025-10-07 01:04:37 (22508): Guest Log: -rwxrwxrwx. 1 root root 212512731 Oct  6 13:01 ATLAS.root_0
2025-10-07 01:04:37 (22508): Guest Log: -rwxrwxrwx. 1 root root 170392842 Oct  6  2025 HITS.pool.root.1
2025-10-07 01:04:37 (22508): Guest Log: -rwxrwxrwx. 1 root root      8604 Oct  6 13:01 init_data.xml
2025-10-07 01:04:37 (22508): Guest Log: -rwxrwxrwx. 1 root root    565601 Oct  6 10:49 input.tar.gz
2025-10-07 01:04:37 (22508): Guest Log: -rwxrwxrwx. 1 root root   1710080 Oct  6  2025 result.tar.gz
2025-10-07 01:04:37 (22508): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct  6 10:49 start_atlas.sh
2025-10-07 01:04:37 (22508): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-07 01:04:37 (22508): VM Completion File Detected.
2025-10-07 01:04:37 (22508): Powering off VM.
2025-10-07 01:04:38 (22508): Successfully stopped VM.
2025-10-07 01:04:38 (22508): Deregistering VM. (boinc_6197c840100883ac, slot#1)
2025-10-07 01:04:38 (22508): Removing network bandwidth throttle group from VM.
2025-10-07 01:04:38 (22508): Removing VM from VirtualBox.
2025-10-07 01:04:43 (22508): called boinc_finish(0)

</stderr_txt>
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