Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:45:40 (31914): wrapper (7.7.26015): starting
06:45:40 (31914): wrapper: running run_atlas (--nthreads 8)
[2025-10-06 06:45:40] Arguments: --nthreads 8
[2025-10-06 06:45:40] Threads: 8
[2025-10-06 06:45:40] Checking for CVMFS
[2025-10-06 06:45:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-06 06:45:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-06 06:45:41] Running cvmfs_config stat atlas.cern.ch
[2025-10-06 06:45:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-06 06:45:41] 2.11.2.0 2864 5606 69900 151395 1 59 15918614 20275200 1 130560 0 4554614 99.991 186361 38496 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-06 06:45:41] CVMFS is ok
[2025-10-06 06:45:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-06 06:45:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-06 06:45:41] Further information can be found at the LHC@home message board.
[2025-10-06 06:45:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-06 06:45:41] Checking for apptainer binary...
[2025-10-06 06:45:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-06 06:45:41] Running /usr/bin/apptainer --version
[2025-10-06 06:45:41] apptainer version 1.3.2-1.el7
[2025-10-06 06:45:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-06 06:45:43] c-115-17.aglt2.org
[2025-10-06 06:45:43] apptainer works
[2025-10-06 06:45:43] Set ATHENA_PROC_NUMBER=8
[2025-10-06 06:45:43] Set ATHENA_CORE_NUMBER=8
[2025-10-06 06:45:43] Starting ATLAS job with PandaID=6832200227
[2025-10-06 06:45:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-06 08:20:21]  *** The last 200 lines of the pilot log: ***
[2025-10-06 08:20:21]  status_code=0
[2025-10-06 08:20:21]  storage_token=
[2025-10-06 08:20:21]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6832200227/log.46376905._101502.job.log.tgz.1
[2025-10-06 08:20:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f5/b7/log.46376905._101502.job.log.tgz.1
[2025-10-06 08:20:21]  workdir=None
[2025-10-06 08:20:21] ]
[2025-10-06 08:20:21] 2025-10-06 12:19:40,808 | INFO     | transferring file log.46376905._101502.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6832200227/log.46376905._101502.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-06 08:20:21] 2025-10-06 12:19:40,808 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6832200227/log.46376905._101502.job.log.tgz.1 /tmp/boinchome/slots/0/log.46376905._101502.job
[2025-10-06 08:20:21] 2025-10-06 12:19:40,835 | INFO     | adding to output.list: log.46376905._101502.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f5/b7/log.46376905._101502.job.log.tg
[2025-10-06 08:20:21] 2025-10-06 12:19:40,836 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-06 08:20:21] 2025-10-06 12:19:40,837 | INFO     | summary of transferred files:
[2025-10-06 08:20:21] 2025-10-06 12:19:40,837 | INFO     |  -- lfn=log.46376905._101502.job.log.tgz.1, status_code=0, status=transferred
[2025-10-06 08:20:21] 2025-10-06 12:19:40,837 | INFO     | stage-out finished correctly
[2025-10-06 08:20:21] 2025-10-06 12:19:41,031 | INFO     | PID=3269 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-06 08:20:21] 2025-10-06 12:19:42,032 | INFO     | time since job start (5622s) is within the limit (172800.0s)
[2025-10-06 08:20:21] 2025-10-06 12:19:42,032 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-06 08:20:21] 2025-10-06 12:19:42,450 | INFO     | job 6832200227 has state=finished
[2025-10-06 08:20:21] 2025-10-06 12:19:42,450 | INFO     | preparing for final server update for job 6832200227 in state='finished'
[2025-10-06 08:20:21] 2025-10-06 12:19:42,451 | INFO     | this job has now completed (state=finished)
[2025-10-06 08:20:21] 2025-10-06 12:19:42,451 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-06 08:20:21] 2025-10-06 12:19:42,451 | INFO     | log transfer has been attempted: DONE
[2025-10-06 08:20:21] 2025-10-06 12:19:42,451 | INFO     | job 6832200227 has finished - writing final server update
[2025-10-06 08:20:21] 2025-10-06 12:19:42,452 | INFO     | total number of processed events: 400 (read)
[2025-10-06 08:20:21] 2025-10-06 12:19:42,453 | INFO     | executing command: lscpu
[2025-10-06 08:20:21] 2025-10-06 12:19:42,481 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-06 08:20:21] 2025-10-06 12:19:42,796 | INFO     | monitor loop #419: job 0:6832200227 is in state 'finished'
[2025-10-06 08:20:21] 2025-10-06 12:19:42,796 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 08:20:21] 2025-10-06 12:19:44,037 | INFO     | time since job start (5624s) is within the limit (172800.0s)
[2025-10-06 08:20:21] 2025-10-06 12:19:45,299 | INFO     | monitor loop #420: job 0:6832200227 is in state 'finished'
[2025-10-06 08:20:21] 2025-10-06 12:19:45,300 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 08:20:21] 2025-10-06 12:19:46,043 | INFO     | time since job start (5626s) is within the limit (172800.0s)
[2025-10-06 08:20:21] 2025-10-06 12:19:47,803 | INFO     | monitor loop #421: job 0:6832200227 is in state 'finished'
[2025-10-06 08:20:21] 2025-10-06 12:19:47,803 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 08:20:21] 2025-10-06 12:19:47,877 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-06 08:20:21] 2025-10-06 12:19:47,880 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1745.75
[2025-10-06 08:20:21] 2025-10-06 12:19:47,882 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6832200227/memory_monitor_summary.json (trf name=prmon)
[2025-10-06 08:20:21] 2025-10-06 12:19:47,883 | INFO     | extracted standard info from prmon json
[2025-10-06 08:20:21] 2025-10-06 12:19:47,883 | INFO     | extracted standard memory fields from prmon json
[2025-10-06 08:20:21] 2025-10-06 12:19:47,883 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-06 08:20:21] 2025-10-06 12:19:47,884 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-06 08:20:21] 2025-10-06 12:19:47,884 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-06 08:20:21] 2025-10-06 12:19:47,886 | INFO     | fitting pss+swap vs Time
[2025-10-06 08:20:21] 2025-10-06 12:19:47,886 | INFO     | sum of square deviations: 190403570.0
[2025-10-06 08:20:21] 2025-10-06 12:19:47,887 | INFO     | sum of deviations: -8326535806.999997
[2025-10-06 08:20:21] 2025-10-06 12:19:47,887 | INFO     | mean x: 1759750458.0
[2025-10-06 08:20:21] 2025-10-06 12:19:47,887 | INFO     | mean y: 2563320.8352941177
[2025-10-06 08:20:21] 2025-10-06 12:19:47,887 | INFO     | -- intersect: 76958185528.5578
[2025-10-06 08:20:21] 2025-10-06 12:19:47,887 | INFO     | intersect: 76958185528.5578
[2025-10-06 08:20:21] 2025-10-06 12:19:47,888 | INFO     | chi2: 0.07954110018511504
[2025-10-06 08:20:21] 2025-10-06 12:19:47,888 | INFO     | -- intersect: 76958185528.5578
[2025-10-06 08:20:21] 2025-10-06 12:19:47,888 | INFO     | current memory leak: -43.73 B/s (using 85 data points, chi2=0.08)
[2025-10-06 08:20:21] 2025-10-06 12:19:47,888 | INFO     | could have reported an average CPU frequency of 2097 MHz (7 samples)
[2025-10-06 08:20:21] 2025-10-06 12:19:47,888 | INFO     | ..............................
[2025-10-06 08:20:21] 2025-10-06 12:19:47,888 | INFO     | . Timing measurements:
[2025-10-06 08:20:21] 2025-10-06 12:19:47,889 | INFO     | . get job = 0 s
[2025-10-06 08:20:21] 2025-10-06 12:19:47,889 | INFO     | . initial setup = 2 s
[2025-10-06 08:20:21] 2025-10-06 12:19:47,889 | INFO     | . payload setup = 8 s
[2025-10-06 08:20:21] 2025-10-06 12:19:47,889 | INFO     | . stage-in = 0 s
[2025-10-06 08:20:21] 2025-10-06 12:19:47,889 | INFO     | . payload execution = 5591 s
[2025-10-06 08:20:21] 2025-10-06 12:19:47,889 | INFO     | . stage-out = 0 s
[2025-10-06 08:20:21] 2025-10-06 12:19:47,889 | INFO     | . log creation = 0 s
[2025-10-06 08:20:21] 2025-10-06 12:19:47,889 | INFO     | ..............................
[2025-10-06 08:20:21] 2025-10-06 12:19:48,048 | INFO     | time since job start (5628s) is within the limit (172800.0s)
[2025-10-06 08:20:21] 2025-10-06 12:19:48,444 | INFO     | 
[2025-10-06 08:20:21] 2025-10-06 12:19:48,445 | INFO     | job summary report
[2025-10-06 08:20:21] 2025-10-06 12:19:48,445 | INFO     | --------------------------------------------------
[2025-10-06 08:20:21] 2025-10-06 12:19:48,445 | INFO     | PanDA job id: 6832200227
[2025-10-06 08:20:21] 2025-10-06 12:19:48,445 | INFO     | task id: 46376905
[2025-10-06 08:20:21] 2025-10-06 12:19:48,445 | INFO     | errors: (none)
[2025-10-06 08:20:21] 2025-10-06 12:19:48,446 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-06 08:20:21] 2025-10-06 12:19:48,446 | INFO     | pilot state: finished 
[2025-10-06 08:20:21] 2025-10-06 12:19:48,446 | INFO     | transexitcode: 0
[2025-10-06 08:20:21] 2025-10-06 12:19:48,446 | INFO     | exeerrorcode: 0
[2025-10-06 08:20:21] 2025-10-06 12:19:48,446 | INFO     | exeerrordiag: 
[2025-10-06 08:20:21] 2025-10-06 12:19:48,447 | INFO     | exitcode: 0
[2025-10-06 08:20:21] 2025-10-06 12:19:48,447 | INFO     | exitmsg: OK
[2025-10-06 08:20:21] 2025-10-06 12:19:48,447 | INFO     | cpuconsumptiontime: 41954 s
[2025-10-06 08:20:21] 2025-10-06 12:19:48,447 | INFO     | nevents: 400
[2025-10-06 08:20:21] 2025-10-06 12:19:48,447 | INFO     | neventsw: 0
[2025-10-06 08:20:21] 2025-10-06 12:19:48,447 | INFO     | pid: 9813
[2025-10-06 08:20:21] 2025-10-06 12:19:48,448 | INFO     | pgrp: 9813
[2025-10-06 08:20:21] 2025-10-06 12:19:48,448 | INFO     | corecount: 8
[2025-10-06 08:20:21] 2025-10-06 12:19:48,448 | INFO     | event service: False
[2025-10-06 08:20:21] 2025-10-06 12:19:48,448 | INFO     | sizes: {0: 2347988, 1: 2348844, 7: 2349106, 12: 2349134, 5603: 2375718, 5604: 2384716, 5605: 2384900, 5611: 2385094}
[2025-10-06 08:20:21] 2025-10-06 12:19:48,448 | INFO     | --------------------------------------------------
[2025-10-06 08:20:21] 2025-10-06 12:19:48,449 | INFO     | 
[2025-10-06 08:20:21] 2025-10-06 12:19:48,449 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-06 08:20:21] 2025-10-06 12:19:48,478 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-06 08:20:21] 2025-10-06 12:19:48,478 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-06 08:20:21] 2025-10-06 12:19:48,478 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-06 08:20:21] 2025-10-06 12:19:48,479 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-06 08:20:21] 2025-10-06 12:19:48,479 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-06 08:20:21] 2025-10-06 12:19:48,479 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-06 08:20:21] 2025-10-06 12:19:48,479 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-06 08:20:21] 2025-10-06 12:19:48,480 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-06 08:20:21] 2025-10-06 12:19:48,480 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-06 08:20:21] 2025-10-06 12:19:48,480 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-06 08:20:21] 2025-10-06 12:19:48,480 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-06 08:20:21] 2025-10-06 12:19:48,480 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-06 08:20:21] 2025-10-06 12:19:48,481 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-06 08:20:21] 2025-10-06 12:19:48,481 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-06 08:20:21] 2025-10-06 12:19:48,481 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-06 08:20:21] 2025-10-06 12:19:48,481 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-06 08:20:21] 2025-10-06 12:19:48,482 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-06 08:20:21] 2025-10-06 12:19:48,482 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-06 08:20:21] 2025-10-06 12:19:48,482 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-06 08:20:21] 2025-10-06 12:19:48,482 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-06 08:20:21] 2025-10-06 12:19:48,483 | INFO     | job 6832200227 has completed (purged errors)
[2025-10-06 08:20:21] 2025-10-06 12:19:48,483 | INFO     | overall cleanup function is called
[2025-10-06 08:20:21] 2025-10-06 12:19:49,491 | INFO     | --- collectZombieJob: --- 10, [9813]
[2025-10-06 08:20:21] 2025-10-06 12:19:49,491 | INFO     | zombie collector waiting for pid 9813
[2025-10-06 08:20:21] 2025-10-06 12:19:49,491 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-06 08:20:21] 2025-10-06 12:19:49,492 | INFO     | collected zombie processes
[2025-10-06 08:20:21] 2025-10-06 12:19:49,492 | INFO     | will attempt to kill all subprocesses of pid=9813
[2025-10-06 08:20:21] 2025-10-06 12:19:49,580 | INFO     | process IDs to be killed: [9813] (in reverse order)
[2025-10-06 08:20:21] 2025-10-06 12:19:49,636 | WARNING  | found no corresponding commands to process id(s)
[2025-10-06 08:20:21] 2025-10-06 12:19:49,637 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-06 08:20:21] 2025-10-06 12:19:49,643 | INFO     | did not find any defunct processes belonging to 9813
[2025-10-06 08:20:21] 2025-10-06 12:19:49,646 | INFO     | did not find any defunct processes belonging to 9813
[2025-10-06 08:20:21] 2025-10-06 12:19:49,646 | INFO     | ready for new job
[2025-10-06 08:20:21] 2025-10-06 12:19:49,646 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-06 08:20:21] 2025-10-06 12:19:49,648 | INFO     | ***************************************
[2025-10-06 08:20:21] 2025-10-06 12:19:49,648 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-06 08:20:21] 2025-10-06 12:19:49,648 | INFO     | ***************************************
[2025-10-06 08:20:21] 2025-10-06 12:19:49,648 | INFO     | 
[2025-10-06 08:20:21] 2025-10-06 12:19:49,649 | INFO     | architecture information:
[2025-10-06 08:20:21] 2025-10-06 12:19:49,649 | INFO     | executing command: cat /etc/os-release
[2025-10-06 08:20:21] 2025-10-06 12:19:49,668 | INFO     | cat /etc/os-release:
[2025-10-06 08:20:21] NAME="CentOS Linux"
[2025-10-06 08:20:21] VERSION="7 (Core)"
[2025-10-06 08:20:21] ID="centos"
[2025-10-06 08:20:21] ID_LIKE="rhel fedora"
[2025-10-06 08:20:21] VERSION_ID="7"
[2025-10-06 08:20:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-06 08:20:21] ANSI_COLOR="0;31"
[2025-10-06 08:20:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-06 08:20:21] HOME_URL="https://www.centos.org/"
[2025-10-06 08:20:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-06 08:20:21] 
[2025-10-06 08:20:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-06 08:20:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-06 08:20:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-06 08:20:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-06 08:20:21] 
[2025-10-06 08:20:21] 2025-10-06 12:19:49,668 | INFO     | ***************************************
[2025-10-06 08:20:21] 2025-10-06 12:19:50,171 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-06 08:20:21] 2025-10-06 12:19:50,190 | INFO     | sufficient remaining disk space (18622709760 B)
[2025-10-06 08:20:21] 2025-10-06 12:19:50,191 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-06 08:20:21] 2025-10-06 12:19:50,191 | INFO     | current server update state: UPDATING_FINAL
[2025-10-06 08:20:21] 2025-10-06 12:19:50,191 | INFO     | update_server=False
[2025-10-06 08:20:21] 2025-10-06 12:19:50,192 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-06 08:20:21] 2025-10-06 12:19:50,306 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-06 08:20:21] 2025-10-06 12:19:50,307 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-06 08:20:21] 2025-10-06 12:19:50,307 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-06 08:20:21] 2025-10-06 12:19:50,307 | INFO     | will abort loop
[2025-10-06 08:20:21] 2025-10-06 12:19:50,519 | INFO     | all job control threads have been joined
[2025-10-06 08:20:21] 2025-10-06 12:19:50,600 | INFO     | all payload control threads have been joined
[2025-10-06 08:20:21] 2025-10-06 12:19:50,987 | INFO     | all data control threads have been joined
[2025-10-06 08:20:21] 2025-10-06 12:19:51,197 | INFO     | [job] retrieve thread has finished
[2025-10-06 08:20:21] 2025-10-06 12:19:51,226 | INFO     | [job] create_data_payload thread has finished
[2025-10-06 08:20:21] 2025-10-06 12:19:51,313 | INFO     | [job] job monitor thread has finished
[2025-10-06 08:20:21] 2025-10-06 12:19:51,419 | INFO     | [payload] failed_post thread has finished
[2025-10-06 08:20:21] 2025-10-06 12:19:51,441 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-06 08:20:21] 2025-10-06 12:19:51,450 | INFO     | [payload] validate_pre thread has finished
[2025-10-06 08:20:21] 2025-10-06 12:19:51,451 | INFO     | [payload] execute_payloads thread has finished
[2025-10-06 08:20:21] 2025-10-06 12:19:51,521 | INFO     | [job] control thread has finished
[2025-10-06 08:20:21] 2025-10-06 12:19:51,606 | INFO     | [payload] control thread has finished
[2025-10-06 08:20:21] 2025-10-06 12:19:51,993 | INFO     | [data] control thread has finished
[2025-10-06 08:20:21] 2025-10-06 12:19:52,240 | INFO     | [payload] validate_post thread has finished
[2025-10-06 08:20:21] 2025-10-06 12:19:52,528 | INFO     | [data] copytool_in thread has finished
[2025-10-06 08:20:21] 2025-10-06 12:19:52,552 | INFO     | [job] validate thread has finished
[2025-10-06 08:20:21] 2025-10-06 12:19:52,621 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-06 08:20:21] 2025-10-06 12:19:52,979 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-06 08:20:21] 2025-10-06 12:19:53,447 | INFO     | [data] copytool_out thread has finished
[2025-10-06 08:20:21] 2025-10-06 12:19:53,985 | INFO     | [job] queue monitor thread has finished
[2025-10-06 08:20:21] 2025-10-06 12:19:56,627 | INFO     | [data] queue_monitor thread has finished
[2025-10-06 08:20:21] 2025-10-06 12:20:00,233 | INFO     | job.realtimelogging is not enabled
[2025-10-06 08:20:21] 2025-10-06 12:20:01,239 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-06 08:20:21] 2025-10-06 12:20:08,883 | INFO     | [monitor] cgroup control has ended
[2025-10-06 08:20:21] 2025-10-06 12:20:09,665 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139830427727680)>', '<ExcThread(monitor, started 139829102769920)>']
[2025-10-06 08:20:21] 2025-10-06 12:20:14,669 | INFO     | all workflow threads have been joined
[2025-10-06 08:20:21] 2025-10-06 12:20:14,670 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-06 08:20:21] 2025-10-06 12:20:14,670 | INFO     | traces error code: 0
[2025-10-06 08:20:21] 2025-10-06 12:20:14,671 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-06 08:20:21] 2025-10-06 12:20:21,255 | INFO     | PID=3269 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-06 08:20:21] 2025-10-06 12:20:21,256 | INFO     | found 0 job(s) in 20 queues
[2025-10-06 08:20:21] 2025-10-06 12:20:21,256 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-06 08:20:21] 2025-10-06 12:20:21,256 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-06 08:20:21] 2025-10-06 12:20:21,256 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-06 08:20:21] 2025-10-06 12:20:21,257 | INFO     | [monitor] control thread has ended
[2025-10-06 08:20:21] 2025-10-06 12:20:21,367 [wrapper] ==== pilot stdout END ====
[2025-10-06 08:20:21] 2025-10-06 12:20:21,372 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-06 08:20:21] 2025-10-06 12:20:21,376 [wrapper] pilotpid: 3269
[2025-10-06 08:20:21] 2025-10-06 12:20:21,381 [wrapper] Pilot exit status: 0
[2025-10-06 08:20:21] 2025-10-06 12:20:21,398 [wrapper] pandaids: 6832200227
[2025-10-06 08:20:21] 2025-10-06 12:20:21,439 [wrapper] cleanup supervisor_pilot  1845 3270
[2025-10-06 08:20:21] 2025-10-06 12:20:21,444 [wrapper] Test setup, not cleaning
[2025-10-06 08:20:21] 2025-10-06 12:20:21,449 [wrapper] apfmon messages muted
[2025-10-06 08:20:21] 2025-10-06 12:20:21,453 [wrapper] ==== wrapper stdout END ====
[2025-10-06 08:20:21] 2025-10-06 12:20:21,458 [wrapper] ==== wrapper stderr END ====
[2025-10-06 08:20:21]  *** Error codes and diagnostics ***
[2025-10-06 08:20:21]     "exeErrorCode": 0,
[2025-10-06 08:20:21]     "exeErrorDiag": "",
[2025-10-06 08:20:21]     "pilotErrorCode": 0,
[2025-10-06 08:20:21]     "pilotErrorDiag": "",
[2025-10-06 08:20:21]  *** Listing of results directory ***
[2025-10-06 08:20:21] total 387864
[2025-10-06 08:20:21] -rw-r--r-- 1 boincer umatlas    552446 Oct  5 20:57 pilot3.tar.gz
[2025-10-06 08:20:21] -rw-r--r-- 1 boincer umatlas      5112 Oct  5 20:58 queuedata.json
[2025-10-06 08:20:21] -rwx------ 1 boincer umatlas     36292 Oct  5 20:59 runpilot2-wrapper.sh
[2025-10-06 08:20:21] -rw-r--r-- 1 boincer umatlas       100 Oct  6 06:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-06 08:20:21] -rwxr-xr-x 1 boincer umatlas      7986 Oct  6 06:45 run_atlas
[2025-10-06 08:20:21] -rw-r--r-- 1 boincer umatlas       105 Oct  6 06:45 job.xml
[2025-10-06 08:20:21] -rw-r--r-- 2 boincer umatlas 213731414 Oct  6 06:45 EVNT.46376901._003752.pool.root.1
[2025-10-06 08:20:21] -rw-r--r-- 2 boincer umatlas     15120 Oct  6 06:45 start_atlas.sh
[2025-10-06 08:20:21] drwxrwx--x 2 boincer umatlas      4096 Oct  6 06:45 shared
[2025-10-06 08:20:21] -rw-r--r-- 2 boincer umatlas    565604 Oct  6 06:45 input.tar.gz
[2025-10-06 08:20:21] -rw-r--r-- 1 boincer umatlas         0 Oct  6 06:45 boinc_lockfile
[2025-10-06 08:20:21] -rw-r--r-- 1 boincer umatlas      2519 Oct  6 06:45 pandaJob.out
[2025-10-06 08:20:21] -rw------- 1 boincer umatlas    975011 Oct  6 06:45 agis_schedconf.cvmfs.json
[2025-10-06 08:20:21] -rw------- 1 boincer umatlas   1560401 Oct  6 06:45 agis_ddmendpoints.agis.ALL.json
[2025-10-06 08:20:21] drwx------ 4 boincer umatlas      4096 Oct  6 06:46 pilot3
[2025-10-06 08:20:21] -rw-r--r-- 1 boincer umatlas      5910 Oct  6 08:10 init_data.xml
[2025-10-06 08:20:21] -rw------- 1 boincer umatlas 177256542 Oct  6 08:19 HITS.46376905._101502.pool.root.1
[2025-10-06 08:20:21] -rw-r--r-- 1 boincer umatlas       529 Oct  6 08:19 boinc_task_state.xml
[2025-10-06 08:20:21] -rw------- 1 boincer umatlas      1048 Oct  6 08:19 memory_monitor_summary.json
[2025-10-06 08:20:21] -rw------- 1 boincer umatlas    348804 Oct  6 08:19 log.46376905._101502.job.log.tgz.1
[2025-10-06 08:20:21] -rw------- 1 boincer umatlas      7842 Oct  6 08:19 heartbeat.json
[2025-10-06 08:20:21] -rw-r--r-- 1 boincer umatlas      8192 Oct  6 08:20 boinc_mmap_file
[2025-10-06 08:20:21] -rw-r--r-- 1 boincer umatlas        27 Oct  6 08:20 wrapper_checkpoint.txt
[2025-10-06 08:20:21] -rw------- 1 boincer umatlas        95 Oct  6 08:20 pilot_heartbeat.json
[2025-10-06 08:20:21] -rw------- 1 boincer umatlas       744 Oct  6 08:20 pilotlog.txt
[2025-10-06 08:20:21] -rw------- 1 boincer umatlas    800781 Oct  6 08:20 log.46376905._101502.job.log.1
[2025-10-06 08:20:21] -rw------- 1 boincer umatlas       357 Oct  6 08:20 output.list
[2025-10-06 08:20:21] -rw-r--r-- 1 boincer umatlas       620 Oct  6 08:20 runtime_log
[2025-10-06 08:20:21] -rw------- 1 boincer umatlas   1167360 Oct  6 08:20 result.tar.gz
[2025-10-06 08:20:21] -rw------- 1 boincer umatlas       658 Oct  6 08:20 Z6JKDmCloP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmH3RNDmU1huvn.diag
[2025-10-06 08:20:21] -rw-r--r-- 1 boincer umatlas      8703 Oct  6 08:20 runtime_log.err
[2025-10-06 08:20:21] -rw-r--r-- 1 boincer umatlas     22134 Oct  6 08:20 stderr.txt
[2025-10-06 08:20:21] HITS file was successfully produced:
[2025-10-06 08:20:21] -rw------- 1 boincer umatlas 177256542 Oct  6 08:19 shared/HITS.pool.root.1
[2025-10-06 08:20:21]  *** Contents of shared directory: ***
[2025-10-06 08:20:21] total 383548
[2025-10-06 08:20:21] -rw-r--r-- 2 boincer umatlas 213731414 Oct  6 06:45 ATLAS.root_0
[2025-10-06 08:20:21] -rw-r--r-- 2 boincer umatlas     15120 Oct  6 06:45 start_atlas.sh
[2025-10-06 08:20:21] -rw-r--r-- 2 boincer umatlas    565604 Oct  6 06:45 input.tar.gz
[2025-10-06 08:20:21] -rw------- 1 boincer umatlas 177256542 Oct  6 08:19 HITS.pool.root.1
[2025-10-06 08:20:21] -rw------- 1 boincer umatlas   1167360 Oct  6 08:20 result.tar.gz
08:20:23 (31914): run_atlas exited; CPU time 41959.287757
08:20:23 (31914): called boinc_finish(0)

</stderr_txt>
]]>

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