Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:29:22 (3965993): wrapper (7.7.26015): starting
05:29:22 (3965993): wrapper: running run_atlas (--nthreads 8)
[2025-10-06 05:29:22] Arguments: --nthreads 8
[2025-10-06 05:29:22] Threads: 8
[2025-10-06 05:29:22] Checking for CVMFS
[2025-10-06 05:29:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-06 05:29:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-06 05:29:23] Running cvmfs_config stat atlas.cern.ch
[2025-10-06 05:29:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-06 05:29:24] 2.13.2.0 7443 28369 88100 151394 3 196 31925814 40960001 71721 16776704 0 263230408 99.800 133966546 34425 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-06 05:29:24] CVMFS is ok
[2025-10-06 05:29:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-06 05:29:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-06 05:29:24] Further information can be found at the LHC@home message board.
[2025-10-06 05:29:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-06 05:29:24] Checking for apptainer binary...
[2025-10-06 05:29:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-06 05:29:24] Running /usr/bin/apptainer --version
[2025-10-06 05:29:24] apptainer version 1.4.2-1.el9
[2025-10-06 05:29:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-06 05:29:24] c8-16-1.aglt2.org
[2025-10-06 05:29:24] apptainer works
[2025-10-06 05:29:24] Set ATHENA_PROC_NUMBER=8
[2025-10-06 05:29:24] Set ATHENA_CORE_NUMBER=8
[2025-10-06 05:29:24] Starting ATLAS job with PandaID=6832084355
[2025-10-06 05:29:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-06 06:47:40]  *** The last 200 lines of the pilot log: ***
[2025-10-06 06:47:40] 2025-10-06 10:46:36,534 | INFO     |  -- lfn=log.46376905._099568.job.log.tgz.1, status_code=0, status=transferred
[2025-10-06 06:47:40] 2025-10-06 10:46:36,535 | INFO     | stage-out finished correctly
[2025-10-06 06:47:40] 2025-10-06 10:46:36,826 | INFO     | time since job start (4572s) is within the limit (172800.0s)
[2025-10-06 06:47:40] 2025-10-06 10:46:38,140 | INFO     | monitor loop #285: job 0:6832084355 is in state 'finished'
[2025-10-06 06:47:40] 2025-10-06 10:46:38,142 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 06:47:40] 2025-10-06 10:46:38,832 | INFO     | time since job start (4574s) is within the limit (172800.0s)
[2025-10-06 06:47:40] 2025-10-06 10:46:39,761 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-06 06:47:40] 2025-10-06 10:46:39,911 | INFO     | job 6832084355 has state=finished
[2025-10-06 06:47:40] 2025-10-06 10:46:39,912 | INFO     | preparing for final server update for job 6832084355 in state='finished'
[2025-10-06 06:47:40] 2025-10-06 10:46:39,912 | INFO     | this job has now completed (state=finished)
[2025-10-06 06:47:40] 2025-10-06 10:46:39,915 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-06 06:47:40] 2025-10-06 10:46:39,915 | INFO     | log transfer has been attempted: DONE
[2025-10-06 06:47:40] 2025-10-06 10:46:39,916 | INFO     | job 6832084355 has finished - writing final server update
[2025-10-06 06:47:40] 2025-10-06 10:46:39,916 | INFO     | total number of processed events: 400 (read)
[2025-10-06 06:47:40] 2025-10-06 10:46:39,918 | INFO     | executing command: lscpu
[2025-10-06 06:47:40] 2025-10-06 10:46:40,000 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-06 06:47:40] 2025-10-06 10:46:40,647 | INFO     | monitor loop #286: job 0:6832084355 is in state 'finished'
[2025-10-06 06:47:40] 2025-10-06 10:46:40,648 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 06:47:40] 2025-10-06 10:46:40,865 | INFO     | time since job start (4576s) is within the limit (172800.0s)
[2025-10-06 06:47:40] 2025-10-06 10:46:42,887 | INFO     | time since job start (4578s) is within the limit (172800.0s)
[2025-10-06 06:47:40] 2025-10-06 10:46:43,157 | INFO     | monitor loop #287: job 0:6832084355 is in state 'finished'
[2025-10-06 06:47:40] 2025-10-06 10:46:43,158 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 06:47:40] 2025-10-06 10:46:44,903 | INFO     | time since job start (4580s) is within the limit (172800.0s)
[2025-10-06 06:47:40] 2025-10-06 10:46:45,663 | INFO     | monitor loop #288: job 0:6832084355 is in state 'finished'
[2025-10-06 06:47:40] 2025-10-06 10:46:45,664 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 06:47:40] 2025-10-06 10:46:46,910 | INFO     | time since job start (4582s) is within the limit (172800.0s)
[2025-10-06 06:47:40] 2025-10-06 10:46:48,168 | INFO     | monitor loop #289: job 0:6832084355 is in state 'finished'
[2025-10-06 06:47:40] 2025-10-06 10:46:48,169 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 06:47:40] 2025-10-06 10:46:48,923 | INFO     | time since job start (4584s) is within the limit (172800.0s)
[2025-10-06 06:47:40] 2025-10-06 10:46:50,679 | INFO     | monitor loop #290: job 0:6832084355 is in state 'finished'
[2025-10-06 06:47:40] 2025-10-06 10:46:50,680 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 06:47:40] 2025-10-06 10:46:50,935 | INFO     | time since job start (4586s) is within the limit (172800.0s)
[2025-10-06 06:47:40] 2025-10-06 10:46:53,184 | INFO     | monitor loop #291: job 0:6832084355 is in state 'finished'
[2025-10-06 06:47:40] 2025-10-06 10:46:53,185 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 06:47:40] 2025-10-06 10:46:53,260 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-06 06:47:40] 2025-10-06 10:46:53,328 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3795.922976562504
[2025-10-06 06:47:40] 2025-10-06 10:46:53,425 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6832084355/memory_monitor_summary.json (trf name=prmon)
[2025-10-06 06:47:40] 2025-10-06 10:46:53,429 | INFO     | extracted standard info from prmon json
[2025-10-06 06:47:40] 2025-10-06 10:46:53,430 | INFO     | extracted standard memory fields from prmon json
[2025-10-06 06:47:40] 2025-10-06 10:46:53,430 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-06 06:47:40] 2025-10-06 10:46:53,430 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-06 06:47:40] 2025-10-06 10:46:53,430 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-06 06:47:40] 2025-10-06 10:46:53,431 | INFO     | fitting pss+swap vs Time
[2025-10-06 06:47:40] 2025-10-06 10:46:53,431 | INFO     | sum of square deviations: 89125546.4393938
[2025-10-06 06:47:40] 2025-10-06 10:46:53,431 | INFO     | sum of deviations: -43263502.04545447
[2025-10-06 06:47:40] 2025-10-06 10:46:53,431 | INFO     | mean x: 1759745430.530303
[2025-10-06 06:47:40] 2025-10-06 10:46:53,431 | INFO     | mean y: 2504061.772727273
[2025-10-06 06:47:40] 2025-10-06 10:46:53,431 | INFO     | -- intersect: 856723228.7205327
[2025-10-06 06:47:40] 2025-10-06 10:46:53,431 | INFO     | intersect: 856723228.7205327
[2025-10-06 06:47:40] 2025-10-06 10:46:53,432 | INFO     | chi2: 0.03885075212674305
[2025-10-06 06:47:40] 2025-10-06 10:46:53,432 | INFO     | -- intersect: 856723228.7205327
[2025-10-06 06:47:40] 2025-10-06 10:46:53,432 | INFO     | current memory leak: -0.49 B/s (using 66 data points, chi2=0.04)
[2025-10-06 06:47:40] 2025-10-06 10:46:53,435 | INFO     | could have reported an average CPU frequency of 3799 MHz (6 samples)
[2025-10-06 06:47:40] 2025-10-06 10:46:53,435 | INFO     | ..............................
[2025-10-06 06:47:40] 2025-10-06 10:46:53,435 | INFO     | . Timing measurements:
[2025-10-06 06:47:40] 2025-10-06 10:46:53,435 | INFO     | . get job = 0 s
[2025-10-06 06:47:40] 2025-10-06 10:46:53,435 | INFO     | . initial setup = 7 s
[2025-10-06 06:47:40] 2025-10-06 10:46:53,435 | INFO     | . payload setup = 35 s
[2025-10-06 06:47:40] 2025-10-06 10:46:53,435 | INFO     | . stage-in = 0 s
[2025-10-06 06:47:40] 2025-10-06 10:46:53,435 | INFO     | . payload execution = 4472 s
[2025-10-06 06:47:40] 2025-10-06 10:46:53,436 | INFO     | . stage-out = 1 s
[2025-10-06 06:47:40] 2025-10-06 10:46:53,436 | INFO     | . log creation = 0 s
[2025-10-06 06:47:40] 2025-10-06 10:46:53,436 | INFO     | ..............................
[2025-10-06 06:47:40] 2025-10-06 10:46:53,590 | INFO     | 
[2025-10-06 06:47:40] 2025-10-06 10:46:53,591 | INFO     | job summary report
[2025-10-06 06:47:40] 2025-10-06 10:46:53,591 | INFO     | --------------------------------------------------
[2025-10-06 06:47:40] 2025-10-06 10:46:53,591 | INFO     | PanDA job id: 6832084355
[2025-10-06 06:47:40] 2025-10-06 10:46:53,591 | INFO     | task id: 46376905
[2025-10-06 06:47:40] 2025-10-06 10:46:53,591 | INFO     | errors: (none)
[2025-10-06 06:47:40] 2025-10-06 10:46:53,591 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-06 06:47:40] 2025-10-06 10:46:53,591 | INFO     | pilot state: finished 
[2025-10-06 06:47:40] 2025-10-06 10:46:53,591 | INFO     | transexitcode: 0
[2025-10-06 06:47:40] 2025-10-06 10:46:53,591 | INFO     | exeerrorcode: 0
[2025-10-06 06:47:40] 2025-10-06 10:46:53,591 | INFO     | exeerrordiag: 
[2025-10-06 06:47:40] 2025-10-06 10:46:53,591 | INFO     | exitcode: 0
[2025-10-06 06:47:40] 2025-10-06 10:46:53,591 | INFO     | exitmsg: OK
[2025-10-06 06:47:40] 2025-10-06 10:46:53,591 | INFO     | cpuconsumptiontime: 20626 s
[2025-10-06 06:47:40] 2025-10-06 10:46:53,591 | INFO     | nevents: 400
[2025-10-06 06:47:40] 2025-10-06 10:46:53,591 | INFO     | neventsw: 0
[2025-10-06 06:47:40] 2025-10-06 10:46:53,591 | INFO     | pid: 3983008
[2025-10-06 06:47:40] 2025-10-06 10:46:53,591 | INFO     | pgrp: 3983008
[2025-10-06 06:47:40] 2025-10-06 10:46:53,591 | INFO     | corecount: 8
[2025-10-06 06:47:40] 2025-10-06 10:46:53,591 | INFO     | event service: False
[2025-10-06 06:47:40] 2025-10-06 10:46:53,591 | INFO     | sizes: {0: 2348645, 1: 2348844, 12: 2348844, 23: 2348872, 31: 2349162, 33: 2349190, 4512: 2375419, 4514: 2384417, 4517: 2384473, 4531: 2384667}
[2025-10-06 06:47:40] 2025-10-06 10:46:53,591 | INFO     | --------------------------------------------------
[2025-10-06 06:47:40] 2025-10-06 10:46:53,591 | INFO     | 
[2025-10-06 06:47:40] 2025-10-06 10:46:53,592 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-10-06 06:47:40] 2025-10-06 10:46:53,696 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-06 06:47:40] 2025-10-06 10:46:53,696 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-06 06:47:40] 2025-10-06 10:46:53,696 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-06 06:47:40] 2025-10-06 10:46:53,696 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-06 06:47:40] 2025-10-06 10:46:53,696 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-06 06:47:40] 2025-10-06 10:46:53,696 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-06 06:47:40] 2025-10-06 10:46:53,696 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-06 06:47:40] 2025-10-06 10:46:53,696 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-06 06:47:40] 2025-10-06 10:46:53,696 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-06 06:47:40] 2025-10-06 10:46:53,696 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-06 06:47:40] 2025-10-06 10:46:53,696 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-06 06:47:40] 2025-10-06 10:46:53,697 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-06 06:47:40] 2025-10-06 10:46:53,697 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-06 06:47:40] 2025-10-06 10:46:53,697 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-06 06:47:40] 2025-10-06 10:46:53,697 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-06 06:47:40] 2025-10-06 10:46:53,697 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-06 06:47:40] 2025-10-06 10:46:53,697 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-06 06:47:40] 2025-10-06 10:46:53,697 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-06 06:47:40] 2025-10-06 10:46:53,697 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-06 06:47:40] 2025-10-06 10:46:53,697 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-06 06:47:40] 2025-10-06 10:46:53,697 | INFO     | job 6832084355 has completed (purged errors)
[2025-10-06 06:47:40] 2025-10-06 10:46:53,697 | INFO     | overall cleanup function is called
[2025-10-06 06:47:40] 2025-10-06 10:46:54,502 | INFO     | PID=3972592 has CPU usage=9.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-06 06:47:40] 2025-10-06 10:46:54,502 | INFO     | .. there are 78 such processes running
[2025-10-06 06:47:40] 2025-10-06 10:46:54,736 | INFO     | --- collectZombieJob: --- 10, [3983008]
[2025-10-06 06:47:40] 2025-10-06 10:46:54,737 | INFO     | zombie collector waiting for pid 3983008
[2025-10-06 06:47:40] 2025-10-06 10:46:54,737 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-06 06:47:40] 2025-10-06 10:46:54,737 | INFO     | collected zombie processes
[2025-10-06 06:47:40] 2025-10-06 10:46:54,737 | INFO     | will attempt to kill all subprocesses of pid=3983008
[2025-10-06 06:47:40] 2025-10-06 10:46:55,688 | INFO     | process IDs to be killed: [3983008] (in reverse order)
[2025-10-06 06:47:40] 2025-10-06 10:46:55,908 | WARNING  | found no corresponding commands to process id(s)
[2025-10-06 06:47:40] 2025-10-06 10:46:55,908 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-06 06:47:40] 2025-10-06 10:46:55,937 | INFO     | did not find any defunct processes belonging to 3983008
[2025-10-06 06:47:40] 2025-10-06 10:46:55,964 | INFO     | did not find any defunct processes belonging to 3983008
[2025-10-06 06:47:40] 2025-10-06 10:46:55,965 | INFO     | ready for new job
[2025-10-06 06:47:40] 2025-10-06 10:46:55,965 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-06 06:47:40] 2025-10-06 10:46:55,966 | INFO     | ***************************************
[2025-10-06 06:47:40] 2025-10-06 10:46:55,966 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-06 06:47:40] 2025-10-06 10:46:55,966 | INFO     | ***************************************
[2025-10-06 06:47:40] 2025-10-06 10:46:55,966 | INFO     | 
[2025-10-06 06:47:40] 2025-10-06 10:46:55,996 | INFO     | architecture information:
[2025-10-06 06:47:40] 2025-10-06 10:46:56,000 | INFO     | executing command: cat /etc/os-release
[2025-10-06 06:47:40] 2025-10-06 10:46:56,034 | INFO     | cat /etc/os-release:
[2025-10-06 06:47:40] NAME="CentOS Linux"
[2025-10-06 06:47:40] VERSION="7 (Core)"
[2025-10-06 06:47:40] ID="centos"
[2025-10-06 06:47:40] ID_LIKE="rhel fedora"
[2025-10-06 06:47:40] VERSION_ID="7"
[2025-10-06 06:47:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-06 06:47:40] ANSI_COLOR="0;31"
[2025-10-06 06:47:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-06 06:47:40] HOME_URL="https://www.centos.org/"
[2025-10-06 06:47:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-06 06:47:40] 
[2025-10-06 06:47:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-06 06:47:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-06 06:47:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-06 06:47:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-06 06:47:40] 
[2025-10-06 06:47:40] 2025-10-06 10:46:56,034 | INFO     | ***************************************
[2025-10-06 06:47:40] 2025-10-06 10:46:56,537 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-10-06 06:47:40] 2025-10-06 10:46:56,559 | INFO     | sufficient remaining disk space (170231070720 B)
[2025-10-06 06:47:40] 2025-10-06 10:46:56,560 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-06 06:47:40] 2025-10-06 10:46:56,560 | INFO     | current server update state: UPDATING_FINAL
[2025-10-06 06:47:40] 2025-10-06 10:46:56,560 | INFO     | update_server=False
[2025-10-06 06:47:40] 2025-10-06 10:46:56,560 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-06 06:47:40] 2025-10-06 10:46:56,699 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-06 06:47:40] 2025-10-06 10:46:56,700 | INFO     | aborting loop
[2025-10-06 06:47:40] 2025-10-06 10:46:56,755 | INFO     | all data control threads have been joined
[2025-10-06 06:47:40] 2025-10-06 10:46:57,244 | INFO     | all payload control threads have been joined
[2025-10-06 06:47:40] 2025-10-06 10:46:57,280 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-06 06:47:40] 2025-10-06 10:46:57,568 | INFO     | [job] retrieve thread has finished
[2025-10-06 06:47:40] 2025-10-06 10:46:57,706 | INFO     | [job] job monitor thread has finished
[2025-10-06 06:47:40] 2025-10-06 10:46:57,726 | INFO     | [data] copytool_in thread has finished
[2025-10-06 06:47:40] 2025-10-06 10:46:57,748 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-06 06:47:40] 2025-10-06 10:46:57,778 | INFO     | [data] control thread has finished
[2025-10-06 06:47:40] 2025-10-06 10:46:57,926 | INFO     | all job control threads have been joined
[2025-10-06 06:47:40] 2025-10-06 10:46:58,250 | INFO     | [payload] control thread has finished
[2025-10-06 06:47:40] 2025-10-06 10:46:58,271 | INFO     | [payload] failed_post thread has finished
[2025-10-06 06:47:40] 2025-10-06 10:46:58,424 | INFO     | [payload] execute_payloads thread has finished
[2025-10-06 06:47:40] 2025-10-06 10:46:58,605 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-06 06:47:40] 2025-10-06 10:46:58,731 | INFO     | [payload] validate_post thread has finished
[2025-10-06 06:47:40] 2025-10-06 10:46:58,732 | INFO     | [job] validate thread has finished
[2025-10-06 06:47:40] 2025-10-06 10:46:58,775 | INFO     | [payload] validate_pre thread has finished
[2025-10-06 06:47:40] 2025-10-06 10:46:58,847 | INFO     | [job] create_data_payload thread has finished
[2025-10-06 06:47:40] 2025-10-06 10:46:58,932 | INFO     | [job] control thread has finished
[2025-10-06 06:47:40] 2025-10-06 10:46:59,293 | INFO     | [data] copytool_out thread has finished
[2025-10-06 06:47:40] 2025-10-06 10:46:59,486 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-06 06:47:40] 2025-10-06 10:46:59,610 | INFO     | [job] queue monitor thread has finished
[2025-10-06 06:47:40] 2025-10-06 10:47:03,501 | INFO     | [data] queue_monitor thread has finished
[2025-10-06 06:47:40] 2025-10-06 10:47:27,976 | INFO     | PID=3972592 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-06 06:47:40] 2025-10-06 10:47:27,976 | INFO     | .. there are 78 such processes running
[2025-10-06 06:47:40] 2025-10-06 10:47:27,977 | INFO     | found 0 job(s) in 20 queues
[2025-10-06 06:47:40] 2025-10-06 10:47:27,977 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-06 06:47:40] 2025-10-06 10:47:27,977 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-06 06:47:40] 2025-10-06 10:47:31,792 | INFO     | [monitor] cgroup control has ended
[2025-10-06 06:47:40] 2025-10-06 10:47:33,403 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140632468805440)>', '<ExcThread(monitor, started 140631456347904)>']
[2025-10-06 06:47:40] 2025-10-06 10:47:34,015 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-06 06:47:40] 2025-10-06 10:47:34,016 | INFO     | [monitor] control thread has ended
[2025-10-06 06:47:40] 2025-10-06 10:47:38,429 | INFO     | all workflow threads have been joined
[2025-10-06 06:47:40] 2025-10-06 10:47:38,430 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-06 06:47:40] 2025-10-06 10:47:38,430 | INFO     | traces error code: 0
[2025-10-06 06:47:40] 2025-10-06 10:47:38,430 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-06 06:47:40] 2025-10-06 10:47:39,618 [wrapper] ==== pilot stdout END ====
[2025-10-06 06:47:40] 2025-10-06 10:47:39,641 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-06 06:47:40] 2025-10-06 10:47:39,664 [wrapper] pilotpid: 3972592
[2025-10-06 06:47:40] 2025-10-06 10:47:39,678 [wrapper] Pilot exit status: 0
[2025-10-06 06:47:40] 2025-10-06 10:47:39,797 [wrapper] pandaids: 6832084355
[2025-10-06 06:47:40] 2025-10-06 10:47:40,094 [wrapper] cleanup supervisor_pilot  348971 3972593
[2025-10-06 06:47:40] 2025-10-06 10:47:40,105 [wrapper] Test setup, not cleaning
[2025-10-06 06:47:40] 2025-10-06 10:47:40,125 [wrapper] apfmon messages muted
[2025-10-06 06:47:40] 2025-10-06 10:47:40,159 [wrapper] ==== wrapper stdout END ====
[2025-10-06 06:47:40] 2025-10-06 10:47:40,162 [wrapper] ==== wrapper stderr END ====
[2025-10-06 06:47:40]  *** Error codes and diagnostics ***
[2025-10-06 06:47:40]     "exeErrorCode": 0,
[2025-10-06 06:47:40]     "exeErrorDiag": "",
[2025-10-06 06:47:40]     "pilotErrorCode": 0,
[2025-10-06 06:47:40]     "pilotErrorDiag": "",
[2025-10-06 06:47:40]  *** Listing of results directory ***
[2025-10-06 06:47:40] total 388532
[2025-10-06 06:47:40] -rw-r--r--. 1 boincer umatlas    552446 Oct  5 19:27 pilot3.tar.gz
[2025-10-06 06:47:40] -rw-r--r--. 1 boincer umatlas      5112 Oct  5 19:38 queuedata.json
[2025-10-06 06:47:40] -rwx------. 1 boincer umatlas     36292 Oct  5 19:38 runpilot2-wrapper.sh
[2025-10-06 06:47:40] -rw-r--r--. 1 boincer umatlas       100 Oct  6 05:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-06 06:47:40] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  6 05:29 run_atlas
[2025-10-06 06:47:40] -rw-r--r--. 1 boincer umatlas       105 Oct  6 05:29 job.xml
[2025-10-06 06:47:40] -rw-r--r--. 2 boincer umatlas 214904524 Oct  6 05:29 EVNT.46376901._003680.pool.root.1
[2025-10-06 06:47:40] -rw-r--r--. 2 boincer umatlas    565605 Oct  6 05:29 input.tar.gz
[2025-10-06 06:47:40] drwxrwx--x. 2 boincer umatlas      4096 Oct  6 05:29 shared
[2025-10-06 06:47:40] -rw-r--r--. 2 boincer umatlas     15120 Oct  6 05:29 start_atlas.sh
[2025-10-06 06:47:40] -rw-r--r--. 1 boincer umatlas         0 Oct  6 05:29 boinc_lockfile
[2025-10-06 06:47:40] -rw-r--r--. 1 boincer umatlas      2519 Oct  6 05:29 pandaJob.out
[2025-10-06 06:47:40] -rw-------. 1 boincer umatlas    975003 Oct  6 05:30 agis_schedconf.cvmfs.json
[2025-10-06 06:47:40] -rw-------. 1 boincer umatlas   1560401 Oct  6 05:30 agis_ddmendpoints.agis.ALL.json
[2025-10-06 06:47:40] drwx------. 4 boincer umatlas      4096 Oct  6 05:30 pilot3
[2025-10-06 06:47:40] -rw-r--r--. 1 boincer umatlas       529 Oct  6 06:46 boinc_task_state.xml
[2025-10-06 06:47:40] -rw-------. 1 boincer umatlas 177258686 Oct  6 06:46 HITS.46376905._099568.pool.root.1
[2025-10-06 06:47:40] -rw-------. 1 boincer umatlas      1046 Oct  6 06:46 memory_monitor_summary.json
[2025-10-06 06:47:40] -rw-------. 1 boincer umatlas    309592 Oct  6 06:46 log.46376905._099568.job.log.tgz.1
[2025-10-06 06:47:40] -rw-------. 1 boincer umatlas      7799 Oct  6 06:46 heartbeat.json
[2025-10-06 06:47:40] -rw-------. 1 boincer umatlas        95 Oct  6 06:46 pilot_heartbeat.json
[2025-10-06 06:47:40] -rw-r--r--. 1 boincer umatlas      7162 Oct  6 06:47 init_data.xml
[2025-10-06 06:47:40] -rw-r--r--. 1 boincer umatlas        27 Oct  6 06:47 wrapper_checkpoint.txt
[2025-10-06 06:47:40] -rw-r--r--. 1 boincer umatlas      8192 Oct  6 06:47 boinc_mmap_file
[2025-10-06 06:47:40] -rw-------. 1 boincer umatlas      4825 Oct  6 06:47 pilotlog.txt
[2025-10-06 06:47:40] -rw-------. 1 boincer umatlas    595964 Oct  6 06:47 log.46376905._099568.job.log.1
[2025-10-06 06:47:40] -rw-------. 1 boincer umatlas       357 Oct  6 06:47 output.list
[2025-10-06 06:47:40] -rw-r--r--. 1 boincer umatlas       620 Oct  6 06:47 runtime_log
[2025-10-06 06:47:40] -rw-------. 1 boincer umatlas    921600 Oct  6 06:47 result.tar.gz
[2025-10-06 06:47:40] -rw-r--r--. 1 boincer umatlas      8698 Oct  6 06:47 runtime_log.err
[2025-10-06 06:47:40] -rw-------. 1 boincer umatlas       655 Oct  6 06:47 el2NDmaUnP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm5fRNDmwP2dwm.diag
[2025-10-06 06:47:40] -rw-r--r--. 1 boincer umatlas     22296 Oct  6 06:47 stderr.txt
[2025-10-06 06:47:40] HITS file was successfully produced:
[2025-10-06 06:47:40] -rw-------. 1 boincer umatlas 177258686 Oct  6 06:46 shared/HITS.pool.root.1
[2025-10-06 06:47:40]  *** Contents of shared directory: ***
[2025-10-06 06:47:40] total 384452
[2025-10-06 06:47:40] -rw-r--r--. 2 boincer umatlas 214904524 Oct  6 05:29 ATLAS.root_0
[2025-10-06 06:47:40] -rw-r--r--. 2 boincer umatlas    565605 Oct  6 05:29 input.tar.gz
[2025-10-06 06:47:40] -rw-r--r--. 2 boincer umatlas     15120 Oct  6 05:29 start_atlas.sh
[2025-10-06 06:47:40] -rw-------. 1 boincer umatlas 177258686 Oct  6 06:46 HITS.pool.root.1
[2025-10-06 06:47:40] -rw-------. 1 boincer umatlas    921600 Oct  6 06:47 result.tar.gz
06:47:42 (3965993): run_atlas exited; CPU time 20739.042149
06:47:42 (3965993): called boinc_finish(0)

</stderr_txt>
]]>

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