Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:54:59 (2104508): wrapper (7.7.26015): starting
05:54:59 (2104508): wrapper: running run_atlas (--nthreads 8)
[2025-10-06 05:54:59] Arguments: --nthreads 8
[2025-10-06 05:54:59] Threads: 8
[2025-10-06 05:54:59] Checking for CVMFS
[2025-10-06 05:54:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-06 05:54:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-06 05:54:59] Running cvmfs_config stat atlas.cern.ch
[2025-10-06 05:55:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-06 05:55:00] 2.13.2.0 645510 116271 294232 151394 1 311 30130648 40960000 11274 16776704 2 283323970 99.688 231298362 34112 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-06 05:55:00] CVMFS is ok
[2025-10-06 05:55:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-06 05:55:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-06 05:55:00] Further information can be found at the LHC@home message board.
[2025-10-06 05:55:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-06 05:55:00] Checking for apptainer binary...
[2025-10-06 05:55:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-06 05:55:00] Running /usr/bin/apptainer --version
[2025-10-06 05:55:00] apptainer version 1.4.2-1.el9
[2025-10-06 05:55:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-06 05:55:00] c-212-5.aglt2.org
[2025-10-06 05:55:00] apptainer works
[2025-10-06 05:55:00] Set ATHENA_PROC_NUMBER=8
[2025-10-06 05:55:00] Set ATHENA_CORE_NUMBER=8
[2025-10-06 05:55:00] Starting ATLAS job with PandaID=6832049215
[2025-10-06 05:55:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
09:11:46 (2534464): wrapper (7.7.26015): starting
09:11:46 (2534464): wrapper: running run_atlas (--nthreads 9)
[2025-10-06 09:11:46] Arguments: --nthreads 9
[2025-10-06 09:11:46] Threads: 9
[2025-10-06 09:11:46] This job has been restarted, cleaning up previous attempt
[2025-10-06 09:11:46] Checking for CVMFS
[2025-10-06 09:11:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-06 09:11:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-06 09:11:46] Running cvmfs_config stat atlas.cern.ch
[2025-10-06 09:11:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-06 09:11:47] 2.13.2.0 645510 116468 296176 151398 0 454 32677038 40960001 7220 16776704 2 283909004 99.687 232019465 34117 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-06 09:11:47] CVMFS is ok
[2025-10-06 09:11:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-06 09:11:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-06 09:11:47] Further information can be found at the LHC@home message board.
[2025-10-06 09:11:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-06 09:11:47] Checking for apptainer binary...
[2025-10-06 09:11:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-06 09:11:47] Running /usr/bin/apptainer --version
[2025-10-06 09:11:47] apptainer version 1.4.2-1.el9
[2025-10-06 09:11:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-06 09:11:47] c-212-5.aglt2.org
[2025-10-06 09:11:47] apptainer works
[2025-10-06 09:11:47] Set ATHENA_PROC_NUMBER=9
[2025-10-06 09:11:47] Set ATHENA_CORE_NUMBER=9
[2025-10-06 09:11:47] Starting ATLAS job with PandaID=6832049215
[2025-10-06 09:11:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-06 14:50:13]  *** The last 200 lines of the pilot log: ***
[2025-10-06 14:50:13] 2025-10-06 18:49:38,217 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-06 14:50:13] 2025-10-06 18:49:38,242 | INFO     | fitting pss+swap vs Time
[2025-10-06 14:50:13] 2025-10-06 18:49:38,255 | INFO     | sum of square deviations: 11244971922.997086
[2025-10-06 14:50:13] 2025-10-06 18:49:38,257 | INFO     | sum of deviations: 47968119175.74018
[2025-10-06 14:50:13] 2025-10-06 18:49:38,258 | INFO     | mean x: 1759766436.0030212
[2025-10-06 14:50:13] 2025-10-06 18:49:38,258 | INFO     | mean y: 2521391.2598187313
[2025-10-06 14:50:13] 2025-10-06 18:49:38,258 | INFO     | -- intersect: -7504183534.43485
[2025-10-06 14:50:13] 2025-10-06 18:49:38,258 | INFO     | intersect: -7504183534.43485
[2025-10-06 14:50:13] 2025-10-06 18:49:38,258 | INFO     | chi2: 2.2110334058084726
[2025-10-06 14:50:13] 2025-10-06 18:49:38,262 | INFO     | sum of square deviations: 10743037235.496859
[2025-10-06 14:50:13] 2025-10-06 18:49:38,264 | INFO     | sum of deviations: 68638973046.06141
[2025-10-06 14:50:13] 2025-10-06 18:49:38,264 | INFO     | mean x: 1759766283.5030675
[2025-10-06 14:50:13] 2025-10-06 18:49:38,264 | INFO     | mean y: 2527589.438650307
[2025-10-06 14:50:13] 2025-10-06 18:49:38,264 | INFO     | -- intersect: -11240898999.610895
[2025-10-06 14:50:13] 2025-10-06 18:49:38,264 | INFO     | intersect: -11240898999.610895
[2025-10-06 14:50:13] 2025-10-06 18:49:38,264 | INFO     | chi2: 1.4605042623525966
[2025-10-06 14:50:13] 2025-10-06 18:49:38,265 | INFO     | current chi2=1.4605042623525966 (change=33.94472202383764 %)
[2025-10-06 14:50:13] 2025-10-06 18:49:38,265 | INFO     | sum of square deviations: 10256265622.996845
[2025-10-06 14:50:13] 2025-10-06 18:49:38,287 | INFO     | sum of deviations: 66883529961.56387
[2025-10-06 14:50:13] 2025-10-06 18:49:38,288 | INFO     | mean x: 1759766131.0031152
[2025-10-06 14:50:13] 2025-10-06 18:49:38,288 | INFO     | mean y: 2527039.436137072
[2025-10-06 14:50:13] 2025-10-06 18:49:38,288 | INFO     | -- intersect: -11473323438.186424
[2025-10-06 14:50:13] 2025-10-06 18:49:38,288 | INFO     | intersect: -11473323438.186424
[2025-10-06 14:50:13] 2025-10-06 18:49:38,288 | INFO     | chi2: 1.4608282222523916
[2025-10-06 14:50:13] 2025-10-06 18:49:38,288 | INFO     | current chi2=1.4608282222523916 (change=-0.02218137311514712 %)
[2025-10-06 14:50:13] 2025-10-06 18:49:38,288 | INFO     | right removable region: 320
[2025-10-06 14:50:13] 2025-10-06 18:49:38,289 | INFO     | sum of square deviations: 10743036625.496859
[2025-10-06 14:50:13] 2025-10-06 18:49:38,311 | INFO     | sum of deviations: -4458123150.981594
[2025-10-06 14:50:13] 2025-10-06 18:49:38,312 | INFO     | mean x: 1759766588.5030675
[2025-10-06 14:50:13] 2025-10-06 18:49:38,312 | INFO     | mean y: 2537221.981595092
[2025-10-06 14:50:13] 2025-10-06 18:49:38,312 | INFO     | -- intersect: 732801526.3878539
[2025-10-06 14:50:13] 2025-10-06 18:49:38,312 | INFO     | intersect: 732801526.3878539
[2025-10-06 14:50:13] 2025-10-06 18:49:38,312 | INFO     | chi2: 0.8153722171691378
[2025-10-06 14:50:13] 2025-10-06 18:49:38,312 | INFO     | current chi2=0.8153722171691378 (change=63.122573588118456 %)
[2025-10-06 14:50:13] 2025-10-06 18:49:38,313 | INFO     | sum of square deviations: 10256264402.996845
[2025-10-06 14:50:13] 2025-10-06 18:49:38,333 | INFO     | sum of deviations: -13895955441.417446
[2025-10-06 14:50:13] 2025-10-06 18:49:38,334 | INFO     | mean x: 1759766741.0031152
[2025-10-06 14:50:13] 2025-10-06 18:49:38,334 | INFO     | mean y: 2540158.4174454827
[2025-10-06 14:50:13] 2025-10-06 18:49:38,334 | INFO     | -- intersect: 2386803985.812771
[2025-10-06 14:50:13] 2025-10-06 18:49:38,334 | INFO     | intersect: 2386803985.812771
[2025-10-06 14:50:13] 2025-10-06 18:49:38,334 | INFO     | chi2: 0.7655351228182635
[2025-10-06 14:50:13] 2025-10-06 18:49:38,334 | INFO     | current chi2=0.7655351228182635 (change=6.1121894150259255 %)
[2025-10-06 14:50:13] 2025-10-06 18:49:38,335 | INFO     | left removable region: 20
[2025-10-06 14:50:13] 2025-10-06 18:49:38,335 | INFO     | sum of square deviations: 8372154718.996668
[2025-10-06 14:50:13] 2025-10-06 18:49:38,356 | INFO     | sum of deviations: 4954605831.520001
[2025-10-06 14:50:13] 2025-10-06 18:49:38,356 | INFO     | mean x: 1759766710.5033333
[2025-10-06 14:50:13] 2025-10-06 18:49:38,357 | INFO     | mean y: 2546951.48
[2025-10-06 14:50:13] 2025-10-06 18:49:38,357 | INFO     | -- intersect: -1038875561.4354658
[2025-10-06 14:50:13] 2025-10-06 18:49:38,357 | INFO     | intersect: -1038875561.4354658
[2025-10-06 14:50:13] 2025-10-06 18:49:38,357 | INFO     | chi2: 0.0029996105668036706
[2025-10-06 14:50:13] 2025-10-06 18:49:38,357 | INFO     | -- intersect: -1038875561.4354658
[2025-10-06 14:50:13] 2025-10-06 18:49:38,371 | INFO     | current memory leak: 0.59 B/s (using 300 data points, chi2=0.00)
[2025-10-06 14:50:13] 2025-10-06 18:49:38,372 | INFO     | could have reported an average CPU frequency of 3259 MHz (15 samples)
[2025-10-06 14:50:13] 2025-10-06 18:49:38,372 | INFO     | ..............................
[2025-10-06 14:50:13] 2025-10-06 18:49:38,372 | INFO     | . Timing measurements:
[2025-10-06 14:50:13] 2025-10-06 18:49:38,372 | INFO     | . get job = 0 s
[2025-10-06 14:50:13] 2025-10-06 18:49:38,372 | INFO     | . initial setup = 2 s
[2025-10-06 14:50:13] 2025-10-06 18:49:38,372 | INFO     | . payload setup = 11 s
[2025-10-06 14:50:13] 2025-10-06 18:49:38,372 | INFO     | . stage-in = 0 s
[2025-10-06 14:50:13] 2025-10-06 18:49:38,373 | INFO     | . payload execution = 20194 s
[2025-10-06 14:50:13] 2025-10-06 18:49:38,373 | INFO     | . stage-out = 3 s
[2025-10-06 14:50:13] 2025-10-06 18:49:38,373 | INFO     | . log creation = 0 s
[2025-10-06 14:50:13] 2025-10-06 18:49:38,373 | INFO     | ..............................
[2025-10-06 14:50:13] 2025-10-06 18:49:38,691 | INFO     | 
[2025-10-06 14:50:13] 2025-10-06 18:49:38,691 | INFO     | job summary report
[2025-10-06 14:50:13] 2025-10-06 18:49:38,691 | INFO     | --------------------------------------------------
[2025-10-06 14:50:13] 2025-10-06 18:49:38,691 | INFO     | PanDA job id: 6832049215
[2025-10-06 14:50:13] 2025-10-06 18:49:38,691 | INFO     | task id: 46376905
[2025-10-06 14:50:13] 2025-10-06 18:49:38,691 | INFO     | errors: (none)
[2025-10-06 14:50:13] 2025-10-06 18:49:38,691 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-06 14:50:13] 2025-10-06 18:49:38,691 | INFO     | pilot state: finished 
[2025-10-06 14:50:13] 2025-10-06 18:49:38,691 | INFO     | transexitcode: 0
[2025-10-06 14:50:13] 2025-10-06 18:49:38,691 | INFO     | exeerrorcode: 0
[2025-10-06 14:50:13] 2025-10-06 18:49:38,691 | INFO     | exeerrordiag: 
[2025-10-06 14:50:13] 2025-10-06 18:49:38,692 | INFO     | exitcode: 0
[2025-10-06 14:50:13] 2025-10-06 18:49:38,692 | INFO     | exitmsg: OK
[2025-10-06 14:50:13] 2025-10-06 18:49:38,692 | INFO     | cpuconsumptiontime: 29348 s
[2025-10-06 14:50:13] 2025-10-06 18:49:38,692 | INFO     | nevents: 400
[2025-10-06 14:50:13] 2025-10-06 18:49:38,692 | INFO     | neventsw: 0
[2025-10-06 14:50:13] 2025-10-06 18:49:38,692 | INFO     | pid: 2591339
[2025-10-06 14:50:13] 2025-10-06 18:49:38,692 | INFO     | pgrp: 2591339
[2025-10-06 14:50:13] 2025-10-06 18:49:38,692 | INFO     | corecount: 9
[2025-10-06 14:50:13] 2025-10-06 18:49:38,692 | INFO     | event service: False
[2025-10-06 14:50:13] 2025-10-06 18:49:38,692 | INFO     | sizes: {0: 2347987, 1: 2348843, 9: 2349105, 12: 2349133, 20209: 2382929, 20213: 2391927, 20216: 2392111, 20230: 2392305}
[2025-10-06 14:50:13] 2025-10-06 18:49:38,692 | INFO     | --------------------------------------------------
[2025-10-06 14:50:13] 2025-10-06 18:49:38,692 | INFO     | 
[2025-10-06 14:50:13] 2025-10-06 18:49:38,692 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-06 14:50:13] 2025-10-06 18:49:38,766 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-06 14:50:13] 2025-10-06 18:49:38,766 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-06 14:50:13] 2025-10-06 18:49:38,766 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-06 14:50:13] 2025-10-06 18:49:38,767 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-06 14:50:13] 2025-10-06 18:49:38,767 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-06 14:50:13] 2025-10-06 18:49:38,767 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-06 14:50:13] 2025-10-06 18:49:38,767 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-06 14:50:13] 2025-10-06 18:49:38,767 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-06 14:50:13] 2025-10-06 18:49:38,767 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-06 14:50:13] 2025-10-06 18:49:38,767 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-06 14:50:13] 2025-10-06 18:49:38,767 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-06 14:50:13] 2025-10-06 18:49:38,767 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-06 14:50:13] 2025-10-06 18:49:38,767 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-06 14:50:13] 2025-10-06 18:49:38,767 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-06 14:50:13] 2025-10-06 18:49:38,767 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-06 14:50:13] 2025-10-06 18:49:38,767 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-06 14:50:13] 2025-10-06 18:49:38,767 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-06 14:50:13] 2025-10-06 18:49:38,767 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-06 14:50:13] 2025-10-06 18:49:38,768 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-06 14:50:13] 2025-10-06 18:49:38,768 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-06 14:50:13] 2025-10-06 18:49:38,768 | INFO     | job 6832049215 has completed (purged errors)
[2025-10-06 14:50:13] 2025-10-06 18:49:38,768 | INFO     | overall cleanup function is called
[2025-10-06 14:50:13] 2025-10-06 18:49:39,781 | INFO     | --- collectZombieJob: --- 10, [2591339]
[2025-10-06 14:50:13] 2025-10-06 18:49:39,781 | INFO     | zombie collector waiting for pid 2591339
[2025-10-06 14:50:13] 2025-10-06 18:49:39,781 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-06 14:50:13] 2025-10-06 18:49:39,781 | INFO     | collected zombie processes
[2025-10-06 14:50:13] 2025-10-06 18:49:39,781 | INFO     | will attempt to kill all subprocesses of pid=2591339
[2025-10-06 14:50:13] 2025-10-06 18:49:40,426 | INFO     | process IDs to be killed: [2591339] (in reverse order)
[2025-10-06 14:50:13] 2025-10-06 18:49:40,539 | WARNING  | found no corresponding commands to process id(s)
[2025-10-06 14:50:13] 2025-10-06 18:49:40,539 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-06 14:50:13] 2025-10-06 18:49:40,558 | INFO     | did not find any defunct processes belonging to 2591339
[2025-10-06 14:50:13] 2025-10-06 18:49:40,579 | INFO     | did not find any defunct processes belonging to 2591339
[2025-10-06 14:50:13] 2025-10-06 18:49:40,579 | INFO     | ready for new job
[2025-10-06 14:50:13] 2025-10-06 18:49:40,579 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-06 14:50:13] 2025-10-06 18:49:40,582 | INFO     | ***************************************
[2025-10-06 14:50:13] 2025-10-06 18:49:40,582 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-06 14:50:13] 2025-10-06 18:49:40,582 | INFO     | ***************************************
[2025-10-06 14:50:13] 2025-10-06 18:49:40,582 | INFO     | 
[2025-10-06 14:50:13] 2025-10-06 18:49:40,588 | INFO     | architecture information:
[2025-10-06 14:50:13] 2025-10-06 18:49:40,589 | INFO     | executing command: cat /etc/os-release
[2025-10-06 14:50:13] 2025-10-06 18:49:40,651 | INFO     | cat /etc/os-release:
[2025-10-06 14:50:13] NAME="CentOS Linux"
[2025-10-06 14:50:13] VERSION="7 (Core)"
[2025-10-06 14:50:13] ID="centos"
[2025-10-06 14:50:13] ID_LIKE="rhel fedora"
[2025-10-06 14:50:13] VERSION_ID="7"
[2025-10-06 14:50:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-06 14:50:13] ANSI_COLOR="0;31"
[2025-10-06 14:50:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-06 14:50:13] HOME_URL="https://www.centos.org/"
[2025-10-06 14:50:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-06 14:50:13] 
[2025-10-06 14:50:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-06 14:50:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-06 14:50:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-06 14:50:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-06 14:50:13] 
[2025-10-06 14:50:13] 2025-10-06 18:49:40,651 | INFO     | ***************************************
[2025-10-06 14:50:13] 2025-10-06 18:49:41,155 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-06 14:50:13] 2025-10-06 18:49:41,231 | INFO     | sufficient remaining disk space (127394643968 B)
[2025-10-06 14:50:13] 2025-10-06 18:49:41,231 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-06 14:50:13] 2025-10-06 18:49:41,233 | INFO     | current server update state: UPDATING_FINAL
[2025-10-06 14:50:13] 2025-10-06 18:49:41,233 | INFO     | update_server=False
[2025-10-06 14:50:13] 2025-10-06 18:49:41,233 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-06 14:50:13] 2025-10-06 18:49:41,233 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-06 14:50:13] 2025-10-06 18:49:41,233 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-06 14:50:13] 2025-10-06 18:49:41,290 | INFO     | all job control threads have been joined
[2025-10-06 14:50:13] 2025-10-06 18:49:41,388 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-06 14:50:13] 2025-10-06 18:49:41,389 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-06 14:50:13] 2025-10-06 18:49:41,389 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-06 14:50:13] 2025-10-06 18:49:41,389 | INFO     | will abort loop
[2025-10-06 14:50:13] 2025-10-06 18:49:41,755 | INFO     | all payload control threads have been joined
[2025-10-06 14:50:13] 2025-10-06 18:49:41,793 | INFO     | all data control threads have been joined
[2025-10-06 14:50:13] 2025-10-06 18:49:42,247 | INFO     | [job] retrieve thread has finished
[2025-10-06 14:50:13] 2025-10-06 18:49:42,298 | INFO     | [job] control thread has finished
[2025-10-06 14:50:13] 2025-10-06 18:49:42,326 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-06 14:50:13] 2025-10-06 18:49:42,390 | INFO     | [payload] failed_post thread has finished
[2025-10-06 14:50:13] 2025-10-06 18:49:42,395 | INFO     | [job] job monitor thread has finished
[2025-10-06 14:50:13] 2025-10-06 18:49:42,621 | INFO     | [monitor] cgroup control has ended
[2025-10-06 14:50:13] 2025-10-06 18:49:42,761 | INFO     | [payload] control thread has finished
[2025-10-06 14:50:13] 2025-10-06 18:49:42,802 | INFO     | [data] control thread has finished
[2025-10-06 14:50:13] 2025-10-06 18:49:42,888 | INFO     | [job] create_data_payload thread has finished
[2025-10-06 14:50:13] 2025-10-06 18:49:43,240 | INFO     | [data] copytool_out thread has finished
[2025-10-06 14:50:13] 2025-10-06 18:49:43,346 | INFO     | [payload] validate_pre thread has finished
[2025-10-06 14:50:13] 2025-10-06 18:49:43,482 | INFO     | [job] validate thread has finished
[2025-10-06 14:50:13] 2025-10-06 18:49:43,589 | INFO     | [payload] execute_payloads thread has finished
[2025-10-06 14:50:13] 2025-10-06 18:49:43,659 | INFO     | [data] copytool_in thread has finished
[2025-10-06 14:50:13] 2025-10-06 18:49:43,696 | INFO     | [payload] validate_post thread has finished
[2025-10-06 14:50:13] 2025-10-06 18:49:43,709 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-06 14:50:13] 2025-10-06 18:49:44,714 | INFO     | [job] queue monitor thread has finished
[2025-10-06 14:50:13] 2025-10-06 18:49:45,263 | INFO     | [data] queue_monitor thread has finished
[2025-10-06 14:50:13] 2025-10-06 18:49:46,401 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140562427848512)>', '<ExcThread(monitor, started 140562147542784)>']
[2025-10-06 14:50:13] 2025-10-06 18:49:51,427 | INFO     | all workflow threads have been joined
[2025-10-06 14:50:13] 2025-10-06 18:49:51,428 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-06 14:50:13] 2025-10-06 18:49:51,428 | INFO     | traces error code: 0
[2025-10-06 14:50:13] 2025-10-06 18:49:51,428 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-06 14:50:13] 2025-10-06 18:50:11,117 | INFO     | PID=2553352 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-06 14:50:13] 2025-10-06 18:50:11,117 | INFO     | .. there are 17 such processes running
[2025-10-06 14:50:13] 2025-10-06 18:50:11,118 | INFO     | found 0 job(s) in 20 queues
[2025-10-06 14:50:13] 2025-10-06 18:50:11,118 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-06 14:50:13] 2025-10-06 18:50:11,118 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-06 14:50:13] 2025-10-06 18:50:11,118 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-06 14:50:13] 2025-10-06 18:50:11,119 | INFO     | [monitor] control thread has ended
[2025-10-06 14:50:13] 2025-10-06 18:50:12,158 [wrapper] ==== pilot stdout END ====
[2025-10-06 14:50:13] 2025-10-06 18:50:12,184 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-06 14:50:13] 2025-10-06 18:50:12,232 [wrapper] pilotpid: 2553352
[2025-10-06 14:50:13] 2025-10-06 18:50:12,281 [wrapper] Pilot exit status: 0
[2025-10-06 14:50:13] 2025-10-06 18:50:12,365 [wrapper] pandaids: 6832049215 6832049215
[2025-10-06 14:50:13] 2025-10-06 18:50:12,463 [wrapper] cleanup supervisor_pilot 3335392 2553353
[2025-10-06 14:50:13] 2025-10-06 18:50:12,490 [wrapper] Test setup, not cleaning
[2025-10-06 14:50:13] 2025-10-06 18:50:12,522 [wrapper] apfmon messages muted
[2025-10-06 14:50:13] 2025-10-06 18:50:12,546 [wrapper] ==== wrapper stdout END ====
[2025-10-06 14:50:13] 2025-10-06 18:50:12,549 [wrapper] ==== wrapper stderr END ====
[2025-10-06 14:50:13]  *** Error codes and diagnostics ***
[2025-10-06 14:50:13]     "exeErrorCode": 0,
[2025-10-06 14:50:13]     "exeErrorDiag": "",
[2025-10-06 14:50:13]     "pilotErrorCode": 0,
[2025-10-06 14:50:13]     "pilotErrorDiag": "",
[2025-10-06 14:50:13]  *** Listing of results directory ***
[2025-10-06 14:50:13] total 604140
[2025-10-06 14:50:13] drwx------. 4 boincer umatlas      4096 Jul 31 09:00 pilot3
[2025-10-06 14:50:13] -rw-r--r--. 1 boincer umatlas    552446 Oct  5 18:14 pilot3.tar.gz
[2025-10-06 14:50:13] -rw-r--r--. 1 boincer umatlas      5112 Oct  5 18:33 queuedata.json
[2025-10-06 14:50:13] -rwx------. 1 boincer umatlas     36292 Oct  5 18:34 runpilot2-wrapper.sh
[2025-10-06 14:50:13] -rw-r--r--. 1 boincer umatlas       100 Oct  6 05:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-06 14:50:13] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  6 05:54 run_atlas
[2025-10-06 14:50:13] -rw-r--r--. 1 boincer umatlas       105 Oct  6 05:54 job.xml
[2025-10-06 14:50:13] -rw-r--r--. 3 boincer umatlas 214061040 Oct  6 05:54 EVNT.46376901._003623.pool.root.1
[2025-10-06 14:50:13] -rw-r--r--. 3 boincer umatlas 214061040 Oct  6 05:54 ATLAS.root_0
[2025-10-06 14:50:13] -rw-r--r--. 2 boincer umatlas     15120 Oct  6 05:54 start_atlas.sh
[2025-10-06 14:50:13] drwxrwx--x. 2 boincer umatlas      4096 Oct  6 05:54 shared
[2025-10-06 14:50:13] -rw-r--r--. 2 boincer umatlas    565597 Oct  6 05:54 input.tar.gz
[2025-10-06 14:50:13] -rw-r--r--. 1 boincer umatlas         0 Oct  6 05:54 boinc_lockfile
[2025-10-06 14:50:13] -rw-r--r--. 1 boincer umatlas      2518 Oct  6 09:11 pandaJob.out
[2025-10-06 14:50:13] -rw-------. 1 boincer umatlas    975008 Oct  6 09:12 agis_schedconf.cvmfs.json
[2025-10-06 14:50:13] -rw-------. 1 boincer umatlas 180092447 Oct  6 14:48 HITS.46376905._098121.pool.root.1
[2025-10-06 14:50:13] -rw-r--r--. 1 boincer umatlas       530 Oct  6 14:48 boinc_task_state.xml
[2025-10-06 14:50:13] -rw-r--r--. 1 boincer umatlas      6946 Oct  6 14:48 init_data.xml
[2025-10-06 14:50:13] -rw-------. 1 boincer umatlas      1044 Oct  6 14:49 memory_monitor_summary.json
[2025-10-06 14:50:13] -rw-------. 1 boincer umatlas   1560401 Oct  6 14:49 agis_ddmendpoints.agis.ALL.json
[2025-10-06 14:50:13] -rw-------. 1 boincer umatlas    563594 Oct  6 14:49 log.46376905._098121.job.log.tgz.1
[2025-10-06 14:50:13] -rw-------. 1 boincer umatlas      7792 Oct  6 14:49 heartbeat.json
[2025-10-06 14:50:13] -rw-r--r--. 1 boincer umatlas      8192 Oct  6 14:50 boinc_mmap_file
[2025-10-06 14:50:13] -rw-r--r--. 1 boincer umatlas        28 Oct  6 14:50 wrapper_checkpoint.txt
[2025-10-06 14:50:13] -rw-------. 1 boincer umatlas        96 Oct  6 14:50 pilot_heartbeat.json
[2025-10-06 14:50:13] -rw-------. 1 boincer umatlas       823 Oct  6 14:50 pilotlog.txt
[2025-10-06 14:50:13] -rw-------. 1 boincer umatlas   2705766 Oct  6 14:50 log.46376905._098121.job.log.1
[2025-10-06 14:50:13] -rw-------. 1 boincer umatlas       357 Oct  6 14:50 output.list
[2025-10-06 14:50:13] -rw-r--r--. 1 boincer umatlas       620 Oct  6 14:50 runtime_log
[2025-10-06 14:50:13] -rw-------. 1 boincer umatlas   3287040 Oct  6 14:50 result.tar.gz
[2025-10-06 14:50:13] -rw-r--r--. 1 boincer umatlas      8784 Oct  6 14:50 runtime_log.err
[2025-10-06 14:50:13] -rw-------. 1 boincer umatlas       783 Oct  6 14:50 3uALDmgUmP8n9Rq4apOajLDm4fhM0noT9bVof3QYDm3lHMDm7JxORm.diag
[2025-10-06 14:50:13] -rw-r--r--. 1 boincer umatlas     23188 Oct  6 14:50 stderr.txt
[2025-10-06 14:50:13] HITS file was successfully produced:
[2025-10-06 14:50:13] -rw-------. 1 boincer umatlas 180092447 Oct  6 14:48 shared/HITS.pool.root.1
[2025-10-06 14:50:13]  *** Contents of shared directory: ***
[2025-10-06 14:50:13] total 388708
[2025-10-06 14:50:13] -rw-r--r--. 3 boincer umatlas 214061040 Oct  6 05:54 ATLAS.root_0
[2025-10-06 14:50:13] -rw-r--r--. 2 boincer umatlas     15120 Oct  6 05:54 start_atlas.sh
[2025-10-06 14:50:13] -rw-r--r--. 2 boincer umatlas    565597 Oct  6 05:54 input.tar.gz
[2025-10-06 14:50:13] -rw-------. 1 boincer umatlas 180092447 Oct  6 14:48 HITS.pool.root.1
[2025-10-06 14:50:13] -rw-------. 1 boincer umatlas   3287040 Oct  6 14:50 result.tar.gz
14:50:14 (2534464): run_atlas exited; CPU time 29962.226793
14:50:14 (2534464): called boinc_finish(0)

</stderr_txt>
]]>

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