Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
12:32:18 (24134): wrapper (7.7.26015): starting
12:32:18 (24134): wrapper: running run_atlas (--nthreads 8)
[2025-10-06 12:32:18] Arguments: --nthreads 8
[2025-10-06 12:32:18] Threads: 8
[2025-10-06 12:32:18] Checking for CVMFS
[2025-10-06 12:32:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-06 12:32:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-06 12:32:18] Running cvmfs_config stat atlas.cern.ch
[2025-10-06 12:32:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-06 12:32:18] 2.11.0.0 8004 9874 67316 151395 3 188 3884145 4096001 1746 130560 1 6545575 99.894 963444 256 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-10-06 12:32:18] CVMFS is ok
[2025-10-06 12:32:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-06 12:32:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-06 12:32:18] Further information can be found at the LHC@home message board.
[2025-10-06 12:32:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-06 12:32:18] Checking for apptainer binary...
[2025-10-06 12:32:18] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-10-06 12:32:18] apptainer is not installed, using version from CVMFS
[2025-10-06 12:32:18] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-06 12:32:18] WARNING: Environment variable TMPDIR already has value [/tmp/job_10232939/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node050
[2025-10-06 12:32:18] apptainer works
[2025-10-06 12:32:18] Set ATHENA_PROC_NUMBER=8
[2025-10-06 12:32:18] Set ATHENA_CORE_NUMBER=8
[2025-10-06 12:32:18] Starting ATLAS job with PandaID=6832199598
[2025-10-06 12:32:18] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10232939/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-06 13:15:53]  *** The last 200 lines of the pilot log: ***
[2025-10-06 13:15:53]  protocol_id=None
[2025-10-06 13:15:53]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-06 13:15:53]  replicas=None
[2025-10-06 13:15:53]  scope=mc23_13p6TeV
[2025-10-06 13:15:53]  status=None
[2025-10-06 13:15:53]  status_code=0
[2025-10-06 13:15:53]  storage_token=
[2025-10-06 13:15:53]  surl=/tmp/job_10232939/atlas/pilot/slots/0/PanDA_Pilot-6832199598/log.46376905._101362.job.log.tgz.1
[2025-10-06 13:15:53]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a4/83/log.46376905._101362.job.log.tgz.1
[2025-10-06 13:15:53]  workdir=None
[2025-10-06 13:15:53] ]
[2025-10-06 13:15:53] 2025-10-06 11:15:15,710 | INFO     | transferring file log.46376905._101362.job.log.tgz.1 from /tmp/job_10232939/atlas/pilot/slots/0/PanDA_Pilot-6832199598/log.46376905._101362.job.log.tgz.1 to /tmp/j
[2025-10-06 13:15:53] 2025-10-06 11:15:15,710 | INFO     | executing command: /usr/bin/env mv /tmp/job_10232939/atlas/pilot/slots/0/PanDA_Pilot-6832199598/log.46376905._101362.job.log.tgz.1 /tmp/job_10232939/atlas/pilot/sl
[2025-10-06 13:15:53] 2025-10-06 11:15:15,718 | INFO     | adding to output.list: log.46376905._101362.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a4/83/log.46376905._101362.job.log.tg
[2025-10-06 13:15:53] 2025-10-06 11:15:15,718 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-06 13:15:53] 2025-10-06 11:15:15,719 | INFO     | summary of transferred files:
[2025-10-06 13:15:53] 2025-10-06 11:15:15,719 | INFO     |  -- lfn=log.46376905._101362.job.log.tgz.1, status_code=0, status=transferred
[2025-10-06 13:15:53] 2025-10-06 11:15:15,719 | INFO     | stage-out finished correctly
[2025-10-06 13:15:53] 2025-10-06 11:15:16,261 | INFO     | time since job start (2573s) is within the limit (172800.0s)
[2025-10-06 13:15:53] 2025-10-06 11:15:18,015 | INFO     | monitor loop #195: job 0:6832199598 is in state 'finished'
[2025-10-06 13:15:53] 2025-10-06 11:15:18,015 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 13:15:53] 2025-10-06 11:15:18,266 | INFO     | time since job start (2575s) is within the limit (172800.0s)
[2025-10-06 13:15:53] 2025-10-06 11:15:19,029 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-06 13:15:53] 2025-10-06 11:15:19,600 | INFO     | job 6832199598 has state=finished
[2025-10-06 13:15:53] 2025-10-06 11:15:19,600 | INFO     | preparing for final server update for job 6832199598 in state='finished'
[2025-10-06 13:15:53] 2025-10-06 11:15:19,601 | INFO     | this job has now completed (state=finished)
[2025-10-06 13:15:53] 2025-10-06 11:15:19,601 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-06 13:15:53] 2025-10-06 11:15:19,601 | INFO     | log transfer has been attempted: DONE
[2025-10-06 13:15:53] 2025-10-06 11:15:19,601 | INFO     | job 6832199598 has finished - writing final server update
[2025-10-06 13:15:53] 2025-10-06 11:15:19,601 | INFO     | total number of processed events: 400 (read)
[2025-10-06 13:15:53] 2025-10-06 11:15:19,601 | INFO     | executing command: lscpu
[2025-10-06 13:15:53] 2025-10-06 11:15:19,633 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-06 13:15:53] 2025-10-06 11:15:20,272 | INFO     | time since job start (2577s) is within the limit (172800.0s)
[2025-10-06 13:15:53] 2025-10-06 11:15:20,517 | INFO     | monitor loop #196: job 0:6832199598 is in state 'finished'
[2025-10-06 13:15:53] 2025-10-06 11:15:20,517 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 13:15:53] 2025-10-06 11:15:21,145 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-06 13:15:53] 2025-10-06 11:15:21,150 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2458.699859375
[2025-10-06 13:15:53] 2025-10-06 11:15:21,166 | INFO     | using path: /tmp/job_10232939/atlas/pilot/slots/0/PanDA_Pilot-6832199598/memory_monitor_summary.json (trf name=prmon)
[2025-10-06 13:15:53] 2025-10-06 11:15:21,167 | INFO     | extracted standard info from prmon json
[2025-10-06 13:15:53] 2025-10-06 11:15:21,167 | INFO     | extracted standard memory fields from prmon json
[2025-10-06 13:15:53] 2025-10-06 11:15:21,167 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-06 13:15:53] 2025-10-06 11:15:21,167 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-06 13:15:53] 2025-10-06 11:15:21,167 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-06 13:15:53] 2025-10-06 11:15:21,168 | INFO     | fitting pss+swap vs Time
[2025-10-06 13:15:53] 2025-10-06 11:15:21,168 | INFO     | sum of square deviations: 13283970.0
[2025-10-06 13:15:53] 2025-10-06 11:15:21,168 | INFO     | sum of deviations: -271526433.0
[2025-10-06 13:15:53] 2025-10-06 11:15:21,168 | INFO     | mean x: 1759748103.0
[2025-10-06 13:15:53] 2025-10-06 11:15:21,168 | INFO     | mean y: 2550074.742857143
[2025-10-06 13:15:53] 2025-10-06 11:15:21,168 | INFO     | -- intersect: 35972077662.21156
[2025-10-06 13:15:53] 2025-10-06 11:15:21,168 | INFO     | intersect: 35972077662.21156
[2025-10-06 13:15:53] 2025-10-06 11:15:21,168 | INFO     | chi2: 0.002457171652169213
[2025-10-06 13:15:53] 2025-10-06 11:15:21,168 | INFO     | -- intersect: 35972077662.21156
[2025-10-06 13:15:53] 2025-10-06 11:15:21,168 | INFO     | current memory leak: -20.44 B/s (using 35 data points, chi2=0.00)
[2025-10-06 13:15:53] 2025-10-06 11:15:21,168 | INFO     | could have reported an average CPU frequency of 2588 MHz (5 samples)
[2025-10-06 13:15:53] 2025-10-06 11:15:21,169 | INFO     | ..............................
[2025-10-06 13:15:53] 2025-10-06 11:15:21,169 | INFO     | . Timing measurements:
[2025-10-06 13:15:53] 2025-10-06 11:15:21,169 | INFO     | . get job = 0 s
[2025-10-06 13:15:53] 2025-10-06 11:15:21,169 | INFO     | . initial setup = 1 s
[2025-10-06 13:15:53] 2025-10-06 11:15:21,169 | INFO     | . payload setup = 2 s
[2025-10-06 13:15:53] 2025-10-06 11:15:21,169 | INFO     | . stage-in = 0 s
[2025-10-06 13:15:53] 2025-10-06 11:15:21,169 | INFO     | . payload execution = 2553 s
[2025-10-06 13:15:53] 2025-10-06 11:15:21,169 | INFO     | . stage-out = 0 s
[2025-10-06 13:15:53] 2025-10-06 11:15:21,169 | INFO     | . log creation = 0 s
[2025-10-06 13:15:53] 2025-10-06 11:15:21,169 | INFO     | ..............................
[2025-10-06 13:15:53] 2025-10-06 11:15:21,694 | INFO     | 
[2025-10-06 13:15:53] 2025-10-06 11:15:21,694 | INFO     | job summary report
[2025-10-06 13:15:53] 2025-10-06 11:15:21,694 | INFO     | --------------------------------------------------
[2025-10-06 13:15:53] 2025-10-06 11:15:21,694 | INFO     | PanDA job id: 6832199598
[2025-10-06 13:15:53] 2025-10-06 11:15:21,694 | INFO     | task id: 46376905
[2025-10-06 13:15:53] 2025-10-06 11:15:21,694 | INFO     | errors: (none)
[2025-10-06 13:15:53] 2025-10-06 11:15:21,694 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-06 13:15:53] 2025-10-06 11:15:21,694 | INFO     | pilot state: finished 
[2025-10-06 13:15:53] 2025-10-06 11:15:21,694 | INFO     | transexitcode: 0
[2025-10-06 13:15:53] 2025-10-06 11:15:21,694 | INFO     | exeerrorcode: 0
[2025-10-06 13:15:53] 2025-10-06 11:15:21,694 | INFO     | exeerrordiag: 
[2025-10-06 13:15:53] 2025-10-06 11:15:21,694 | INFO     | exitcode: 0
[2025-10-06 13:15:53] 2025-10-06 11:15:21,694 | INFO     | exitmsg: OK
[2025-10-06 13:15:53] 2025-10-06 11:15:21,694 | INFO     | cpuconsumptiontime: 18310 s
[2025-10-06 13:15:53] 2025-10-06 11:15:21,694 | INFO     | nevents: 400
[2025-10-06 13:15:53] 2025-10-06 11:15:21,694 | INFO     | neventsw: 0
[2025-10-06 13:15:53] 2025-10-06 11:15:21,695 | INFO     | pid: 10107
[2025-10-06 13:15:53] 2025-10-06 11:15:21,695 | INFO     | pgrp: 10107
[2025-10-06 13:15:53] 2025-10-06 11:15:21,695 | INFO     | corecount: 8
[2025-10-06 13:15:53] 2025-10-06 11:15:21,695 | INFO     | event service: False
[2025-10-06 13:15:53] 2025-10-06 11:15:21,695 | INFO     | sizes: {0: 2348942, 2: 2349204, 11: 2349232, 2559: 2374544, 2560: 2383572, 2563: 2383628, 2565: 2383982}
[2025-10-06 13:15:53] 2025-10-06 11:15:21,695 | INFO     | --------------------------------------------------
[2025-10-06 13:15:53] 2025-10-06 11:15:21,695 | INFO     | 
[2025-10-06 13:15:53] 2025-10-06 11:15:21,695 | INFO     | executing command: ls -lF /tmp/job_10232939/atlas/pilot/slots/0
[2025-10-06 13:15:53] 2025-10-06 11:15:21,702 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-06 13:15:53] 2025-10-06 11:15:21,703 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-06 13:15:53] 2025-10-06 11:15:21,703 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-06 13:15:53] 2025-10-06 11:15:21,703 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-06 13:15:53] 2025-10-06 11:15:21,703 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-06 13:15:53] 2025-10-06 11:15:21,703 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-06 13:15:53] 2025-10-06 11:15:21,703 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-06 13:15:53] 2025-10-06 11:15:21,703 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-06 13:15:53] 2025-10-06 11:15:21,703 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-06 13:15:53] 2025-10-06 11:15:21,703 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-06 13:15:53] 2025-10-06 11:15:21,703 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-06 13:15:53] 2025-10-06 11:15:21,703 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-06 13:15:53] 2025-10-06 11:15:21,703 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-06 13:15:53] 2025-10-06 11:15:21,703 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-06 13:15:53] 2025-10-06 11:15:21,703 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-06 13:15:53] 2025-10-06 11:15:21,703 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-06 13:15:53] 2025-10-06 11:15:21,703 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-06 13:15:53] 2025-10-06 11:15:21,703 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-06 13:15:53] 2025-10-06 11:15:21,703 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-06 13:15:53] 2025-10-06 11:15:21,703 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-06 13:15:53] 2025-10-06 11:15:21,703 | INFO     | job 6832199598 has completed (purged errors)
[2025-10-06 13:15:53] 2025-10-06 11:15:21,703 | INFO     | overall cleanup function is called
[2025-10-06 13:15:53] 2025-10-06 11:15:22,709 | INFO     | --- collectZombieJob: --- 10, [10107]
[2025-10-06 13:15:53] 2025-10-06 11:15:22,709 | INFO     | zombie collector waiting for pid 10107
[2025-10-06 13:15:53] 2025-10-06 11:15:22,709 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-06 13:15:53] 2025-10-06 11:15:22,709 | INFO     | collected zombie processes
[2025-10-06 13:15:53] 2025-10-06 11:15:22,709 | INFO     | will attempt to kill all subprocesses of pid=10107
[2025-10-06 13:15:53] 2025-10-06 11:15:22,813 | INFO     | process IDs to be killed: [10107] (in reverse order)
[2025-10-06 13:15:53] 2025-10-06 11:15:22,848 | WARNING  | found no corresponding commands to process id(s)
[2025-10-06 13:15:53] 2025-10-06 11:15:22,848 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-06 13:15:53] 2025-10-06 11:15:22,852 | INFO     | did not find any defunct processes belonging to 10107
[2025-10-06 13:15:53] 2025-10-06 11:15:22,855 | INFO     | did not find any defunct processes belonging to 10107
[2025-10-06 13:15:53] 2025-10-06 11:15:22,856 | INFO     | ready for new job
[2025-10-06 13:15:53] 2025-10-06 11:15:22,856 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-06 13:15:53] 2025-10-06 11:15:22,856 | INFO     | ***************************************
[2025-10-06 13:15:53] 2025-10-06 11:15:22,856 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-06 13:15:53] 2025-10-06 11:15:22,856 | INFO     | ***************************************
[2025-10-06 13:15:53] 2025-10-06 11:15:22,856 | INFO     | 
[2025-10-06 13:15:53] 2025-10-06 11:15:22,871 | INFO     | architecture information:
[2025-10-06 13:15:53] 2025-10-06 11:15:22,871 | INFO     | executing command: cat /etc/os-release
[2025-10-06 13:15:53] 2025-10-06 11:15:22,876 | INFO     | cat /etc/os-release:
[2025-10-06 13:15:53] NAME="CentOS Linux"
[2025-10-06 13:15:53] VERSION="7 (Core)"
[2025-10-06 13:15:53] ID="centos"
[2025-10-06 13:15:53] ID_LIKE="rhel fedora"
[2025-10-06 13:15:53] VERSION_ID="7"
[2025-10-06 13:15:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-06 13:15:53] ANSI_COLOR="0;31"
[2025-10-06 13:15:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-06 13:15:53] HOME_URL="https://www.centos.org/"
[2025-10-06 13:15:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-06 13:15:53] 
[2025-10-06 13:15:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-06 13:15:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-06 13:15:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-06 13:15:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-06 13:15:53] 
[2025-10-06 13:15:53] 2025-10-06 11:15:22,876 | INFO     | ***************************************
[2025-10-06 13:15:53] 2025-10-06 11:15:23,379 | INFO     | executing command: df -mP /tmp/job_10232939/atlas/pilot/slots/0
[2025-10-06 13:15:53] 2025-10-06 11:15:23,385 | INFO     | sufficient remaining disk space (225647263744 B)
[2025-10-06 13:15:53] 2025-10-06 11:15:23,385 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-06 13:15:53] 2025-10-06 11:15:23,385 | INFO     | current server update state: UPDATING_FINAL
[2025-10-06 13:15:53] 2025-10-06 11:15:23,385 | INFO     | update_server=False
[2025-10-06 13:15:53] 2025-10-06 11:15:23,385 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-06 13:15:53] 2025-10-06 11:15:23,780 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-06 13:15:53] 2025-10-06 11:15:23,924 | INFO     | all data control threads have been joined
[2025-10-06 13:15:53] 2025-10-06 11:15:24,025 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-06 13:15:53] 2025-10-06 11:15:24,025 | INFO     | aborting loop
[2025-10-06 13:15:53] 2025-10-06 11:15:24,337 | INFO     | all payload control threads have been joined
[2025-10-06 13:15:53] 2025-10-06 11:15:24,391 | INFO     | [job] retrieve thread has finished
[2025-10-06 13:15:53] 2025-10-06 11:15:24,439 | INFO     | all job control threads have been joined
[2025-10-06 13:15:53] 2025-10-06 11:15:24,759 | INFO     | [data] copytool_in thread has finished
[2025-10-06 13:15:53] 2025-10-06 11:15:24,914 | INFO     | [payload] execute_payloads thread has finished
[2025-10-06 13:15:53] 2025-10-06 11:15:24,929 | INFO     | [data] control thread has finished
[2025-10-06 13:15:53] 2025-10-06 11:15:25,030 | INFO     | [job] job monitor thread has finished
[2025-10-06 13:15:53] 2025-10-06 11:15:25,083 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-06 13:15:53] 2025-10-06 11:15:25,243 | INFO     | [payload] failed_post thread has finished
[2025-10-06 13:15:53] 2025-10-06 11:15:25,342 | INFO     | [payload] control thread has finished
[2025-10-06 13:15:53] 2025-10-06 11:15:25,444 | INFO     | [job] control thread has finished
[2025-10-06 13:15:53] 2025-10-06 11:15:25,683 | INFO     | [job] validate thread has finished
[2025-10-06 13:15:53] 2025-10-06 11:15:25,786 | INFO     | [data] copytool_out thread has finished
[2025-10-06 13:15:53] 2025-10-06 11:15:25,812 | INFO     | [job] create_data_payload thread has finished
[2025-10-06 13:15:53] 2025-10-06 11:15:25,885 | INFO     | [payload] validate_pre thread has finished
[2025-10-06 13:15:53] 2025-10-06 11:15:25,981 | INFO     | [payload] validate_post thread has finished
[2025-10-06 13:15:53] 2025-10-06 11:15:26,229 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-06 13:15:53] 2025-10-06 11:15:26,896 | INFO     | [monitor] cgroup control has ended
[2025-10-06 13:15:53] 2025-10-06 11:15:27,234 | INFO     | [job] queue monitor thread has finished
[2025-10-06 13:15:53] 2025-10-06 11:15:29,088 | INFO     | [data] queue_monitor thread has finished
[2025-10-06 13:15:53] 2025-10-06 11:15:34,390 | INFO     | job.realtimelogging is not enabled
[2025-10-06 13:15:53] 2025-10-06 11:15:35,395 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-06 13:15:53] 2025-10-06 11:15:37,310 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456064747264)>']
[2025-10-06 13:15:53] 2025-10-06 11:15:42,335 | INFO     | all workflow threads have been joined
[2025-10-06 13:15:53] 2025-10-06 11:15:42,336 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-06 13:15:53] 2025-10-06 11:15:42,336 | INFO     | traces error code: 0
[2025-10-06 13:15:53] 2025-10-06 11:15:42,336 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-06 13:15:53] 2025-10-06 11:15:53,471 | INFO     | PID=28822 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-06 13:15:53] 2025-10-06 11:15:53,472 | INFO     | found 0 job(s) in 20 queues
[2025-10-06 13:15:53] 2025-10-06 11:15:53,472 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-06 13:15:53] 2025-10-06 11:15:53,472 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-06 13:15:53] 2025-10-06 11:15:53,472 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-06 13:15:53] 2025-10-06 11:15:53,472 | CRITICAL | thread 'MainThread' is not alive
[2025-10-06 13:15:53] 2025-10-06 11:15:53,472 | INFO     | [monitor] control thread has ended
[2025-10-06 13:15:53] 2025-10-06 11:15:53,525 [wrapper] ==== pilot stdout END ====
[2025-10-06 13:15:53] 2025-10-06 11:15:53,527 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-06 13:15:53] 2025-10-06 11:15:53,528 [wrapper] pilotpid: 28822
[2025-10-06 13:15:53] 2025-10-06 11:15:53,529 [wrapper] Pilot exit status: 0
[2025-10-06 13:15:53] 2025-10-06 11:15:53,532 [wrapper] pandaids: 6832199598
[2025-10-06 13:15:53] 2025-10-06 11:15:53,556 [wrapper] cleanup supervisor_pilot  4442 28823
[2025-10-06 13:15:53] 2025-10-06 11:15:53,557 [wrapper] Test setup, not cleaning
[2025-10-06 13:15:53] 2025-10-06 11:15:53,558 [wrapper] apfmon messages muted
[2025-10-06 13:15:53] 2025-10-06 11:15:53,559 [wrapper] ==== wrapper stdout END ====
[2025-10-06 13:15:53] 2025-10-06 11:15:53,560 [wrapper] ==== wrapper stderr END ====
[2025-10-06 13:15:53]  *** Error codes and diagnostics ***
[2025-10-06 13:15:53]     "exeErrorCode": 0,
[2025-10-06 13:15:53]     "exeErrorDiag": "",
[2025-10-06 13:15:53]     "pilotErrorCode": 0,
[2025-10-06 13:15:53]     "pilotErrorDiag": "",
[2025-10-06 13:15:53]  *** Listing of results directory ***
[2025-10-06 13:15:53] total 394172
[2025-10-06 13:15:53] -rw------- 1 mf493845 unix-user      5112 Oct  6 02:55 queuedata.json
[2025-10-06 13:15:53] -rwx------ 1 mf493845 unix-user     36292 Oct  6 02:57 runpilot2-wrapper.sh
[2025-10-06 13:15:53] -rw------- 1 mf493845 unix-user    552446 Oct  6 02:57 pilot3.tar.gz
[2025-10-06 13:15:53] -rw------- 1 mf493845 unix-user       100 Oct  6 11:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-06 13:15:53] -rwxr-xr-x 1 mf493845 unix-user      7986 Oct  6 11:37 run_atlas
[2025-10-06 13:15:53] -rw------- 1 mf493845 unix-user       105 Oct  6 11:37 job.xml
[2025-10-06 13:15:53] -rw-r--r-- 2 mf493845 unix-user 216818104 Oct  6 12:32 EVNT.46376901._003747.pool.root.1
[2025-10-06 13:15:53] -rw-r--r-- 2 mf493845 unix-user     15120 Oct  6 12:32 start_atlas.sh
[2025-10-06 13:15:53] drwxrwx--x 2 mf493845 unix-user       100 Oct  6 12:32 shared
[2025-10-06 13:15:53] -rw-r--r-- 2 mf493845 unix-user    565594 Oct  6 12:32 input.tar.gz
[2025-10-06 13:15:53] -rw------- 1 mf493845 unix-user      6388 Oct  6 12:32 init_data.xml
[2025-10-06 13:15:53] -rw------- 1 mf493845 unix-user         0 Oct  6 12:32 boinc_setup_complete
[2025-10-06 13:15:53] -rw------- 1 mf493845 unix-user      8192 Oct  6 12:32 boinc_mmap_file
[2025-10-06 13:15:53] -rw------- 1 mf493845 unix-user         0 Oct  6 12:32 boinc_lockfile
[2025-10-06 13:15:53] -rw------- 1 mf493845 unix-user      2519 Oct  6 12:32 pandaJob.out
[2025-10-06 13:15:53] -rw------- 1 mf493845 unix-user    975011 Oct  6 12:32 agis_schedconf.cvmfs.json
[2025-10-06 13:15:53] -rw------- 1 mf493845 unix-user   1560401 Oct  6 12:32 agis_ddmendpoints.agis.ALL.json
[2025-10-06 13:15:53] drwx------ 4 mf493845 unix-user       400 Oct  6 12:32 pilot3
[2025-10-06 13:15:53] -rw------- 1 mf493845 unix-user 181556190 Oct  6 13:14 HITS.46376905._101362.pool.root.1
[2025-10-06 13:15:53] -rw------- 1 mf493845 unix-user        95 Oct  6 13:14 pilot_heartbeat.json
[2025-10-06 13:15:53] -rw------- 1 mf493845 unix-user      1017 Oct  6 13:15 memory_monitor_summary.json
[2025-10-06 13:15:53] -rw------- 1 mf493845 unix-user    284933 Oct  6 13:15 log.46376905._101362.job.log.tgz.1
[2025-10-06 13:15:53] -rw------- 1 mf493845 unix-user      7773 Oct  6 13:15 heartbeat.json
[2025-10-06 13:15:53] -rw------- 1 mf493845 unix-user       815 Oct  6 13:15 pilotlog.txt
[2025-10-06 13:15:53] -rw------- 1 mf493845 unix-user    417229 Oct  6 13:15 log.46376905._101362.job.log.1
[2025-10-06 13:15:53] -rw------- 1 mf493845 unix-user       357 Oct  6 13:15 output.list
[2025-10-06 13:15:53] -rw------- 1 mf493845 unix-user       620 Oct  6 13:15 runtime_log
[2025-10-06 13:15:53] -rw------- 1 mf493845 unix-user    716800 Oct  6 13:15 result.tar.gz
[2025-10-06 13:15:53] -rw------- 1 mf493845 unix-user      9076 Oct  6 13:15 runtime_log.err
[2025-10-06 13:15:53] -rw------- 1 mf493845 unix-user       641 Oct  6 13:15 ge2LDmOioP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDme1RNDmt9euVn.diag
[2025-10-06 13:15:53] -rw------- 1 mf493845 unix-user     22214 Oct  6 13:15 stderr.txt
[2025-10-06 13:15:53] HITS file was successfully produced:
[2025-10-06 13:15:53] -rw------- 1 mf493845 unix-user 181556190 Oct  6 13:14 shared/HITS.pool.root.1
[2025-10-06 13:15:53]  *** Contents of shared directory: ***
[2025-10-06 13:15:53] total 390316
[2025-10-06 13:15:53] -rw-r--r-- 2 mf493845 unix-user 216818104 Oct  6 12:32 ATLAS.root_0
[2025-10-06 13:15:53] -rw-r--r-- 2 mf493845 unix-user     15120 Oct  6 12:32 start_atlas.sh
[2025-10-06 13:15:53] -rw-r--r-- 2 mf493845 unix-user    565594 Oct  6 12:32 input.tar.gz
[2025-10-06 13:15:53] -rw------- 1 mf493845 unix-user 181556190 Oct  6 13:14 HITS.pool.root.1
[2025-10-06 13:15:53] -rw------- 1 mf493845 unix-user    716800 Oct  6 13:15 result.tar.gz
13:15:55 (24134): run_atlas exited; CPU time 18349.307354
13:15:55 (24134): called boinc_finish(0)

</stderr_txt>
]]>

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