Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-09 10:52:19 (13728): vboxwrapper version 26210
2025-10-09 10:52:19 (13728): BOINC client version: 8.0.2
2025-10-09 10:52:21 (13728): Detected: VirtualBox VboxManage Interface (Version: 7.1.12)
2025-10-09 10:52:21 (13728): Successfully copied 'init_data.xml' to the shared directory.
2025-10-09 10:52:21 (13728): Create VM. (boinc_3f3ffbf3c030e57f, slot#0)
2025-10-09 10:52:22 (13728): Setting Memory Size for VM. (4400MB)
2025-10-09 10:52:22 (13728): Setting CPU Count for VM. (2)
2025-10-09 10:52:22 (13728): Setting Chipset Options for VM.
2025-10-09 10:52:23 (13728): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-09 10:52:23 (13728): Setting Boot Options for VM.
2025-10-09 10:52:24 (13728): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-09 10:52:24 (13728): Enabling VM Network Access.
2025-10-09 10:52:24 (13728): Disabling USB Support for VM.
2025-10-09 10:52:24 (13728): Disabling COM Port Support for VM.
2025-10-09 10:52:25 (13728): Disabling LPT Port Support for VM.
2025-10-09 10:52:25 (13728): Disabling Audio Support for VM.
2025-10-09 10:52:25 (13728): Disabling Clipboard Support for VM.
2025-10-09 10:52:25 (13728): Disabling Drag and Drop Support for VM.
2025-10-09 10:52:26 (13728): Adding storage controller(s) to VM.
2025-10-09 10:52:26 (13728): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-09 10:52:28 (13728): Adding VirtualBox Guest Additions to VM.
2025-10-09 10:52:28 (13728): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-09 10:52:29 (13728): forwarding host port 58169 to guest port 80
2025-10-09 10:52:29 (13728): Enabling remote desktop for VM.
2025-10-09 10:52:30 (13728): Enabling shared directory for VM.
2025-10-09 10:52:30 (13728): Starting VM using VBoxManage interface. (boinc_3f3ffbf3c030e57f, slot#0)
2025-10-09 10:52:40 (13728): Successfully started VM. (PID = '16480')
2025-10-09 10:52:40 (13728): Reporting VM Process ID to BOINC.
2025-10-09 10:52:40 (13728): Guest Log: BIOS: VirtualBox 7.1.12
2025-10-09 10:52:40 (13728): Guest Log: CPUID EDX: 0x178bfbff
2025-10-09 10:52:40 (13728): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-09 10:52:40 (13728): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-09 10:52:40 (13728): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-09 10:52:40 (13728): Detected: Web Application Enabled (http://localhost:58169)
2025-10-09 10:52:40 (13728): Detected: Remote Desktop Enabled (localhost:58170)
2025-10-09 10:52:40 (13728): Preference change detected
2025-10-09 10:52:40 (13728): Setting CPU throttle for VM. (100%)
2025-10-09 10:52:40 (13728): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-09 10:52:42 (13728): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-09 10:52:42 (13728): Guest Log: BIOS: Booting from Hard Disk...
2025-10-09 10:52:46 (13728): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-09 10:52:46 (13728): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-09 10:52:46 (13728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-09 10:52:46 (13728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-09 10:52:46 (13728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-09 10:52:46 (13728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-09 10:52:46 (13728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-09 10:52:46 (13728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-09 10:52:46 (13728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-09 10:52:46 (13728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-09 10:52:46 (13728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-09 10:52:46 (13728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-09 10:52:46 (13728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-09 10:52:46 (13728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-09 10:52:46 (13728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-09 10:52:46 (13728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-09 10:52:46 (13728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-09 10:52:46 (13728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-09 10:52:46 (13728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-09 10:52:46 (13728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-09 10:52:46 (13728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-09 10:52:46 (13728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-09 10:52:46 (13728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-09 10:52:46 (13728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-09 10:52:46 (13728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-09 10:52:46 (13728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-09 10:52:46 (13728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-09 10:52:46 (13728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-09 10:52:46 (13728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-09 10:52:46 (13728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-09 10:52:46 (13728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-09 10:52:46 (13728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-09 10:52:55 (13728): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-09 10:52:55 (13728): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-09 10:53:18 (13728): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-09 10:53:18 (13728): Guest Log: 00:00:00.000333 main     Log opened 2025-10-09T10:53:17.415268000Z
2025-10-09 10:53:18 (13728): Guest Log: 00:00:00.000586 main     OS Product: Linux
2025-10-09 10:53:18 (13728): Guest Log: 00:00:00.000667 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-09 10:53:18 (13728): Guest Log: 00:00:00.000733 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-09 10:53:18 (13728): Guest Log: 00:00:00.000801 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-09 10:53:18 (13728): Guest Log: 00:00:00.000804 main     Process ID: 1287
2025-10-09 10:53:18 (13728): Guest Log: 00:00:00.000806 main     Package type: LINUX_64BITS_GENERIC
2025-10-09 10:53:18 (13728): Guest Log: 00:00:00.003280 main     5.2.32 r132073 started. Verbose level = 0
2025-10-09 10:53:19 (13728): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-09 10:53:19 (13728): Guest Log: [INFO] Mounting shared directory
2025-10-09 10:53:19 (13728): Guest Log: [INFO] Checking for init_data.xml
2025-10-09 10:53:26 (13728): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-09 10:53:26 (13728): Guest Log: [INFO] Detected branch: prod
2025-10-09 10:53:26 (13728): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-09 10:53:26 (13728): Guest Log: Copying input files
2025-10-09 10:53:28 (13728): Guest Log: 00:00:10.011804 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 189 352 300 000ns (GuestNow=1 760 000 008 073 691 000 ns GuestLast=1 760 007 197 425 991 000 ns fSetTimeLastLoop=true )
2025-10-09 10:53:29 (13728): Guest Log: Copied input files into RunAtlas.
2025-10-09 10:53:29 (13728): Guest Log: Detected user-configured HTTP proxy at http://192.168.0.39:3128 - will set in /etc/cvmfs/default.local
2025-10-09 10:54:23 (13728): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-09 10:54:24 (13728): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-09 10:54:24 (13728): Guest Log: 2.6.3.0 1562 1 29568 151505 3 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.0.39:3128 1
2025-10-09 10:54:25 (13728): Guest Log: copied the webapp to /var/www
2025-10-09 10:54:25 (13728): Guest Log: ATHENA_PROC_NUMBER=2
2025-10-09 10:54:25 (13728): Guest Log: ATHENA_CORE_NUMBER=2
2025-10-09 10:54:25 (13728): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-09 10:54:25 (13728): Guest Log:  *** Starting ATLAS job. (PandaID=6832260737 taskID=46376905) ***
2025-10-09 12:32:53 (13728): Status Report: Elapsed Time: '6000.000000'
2025-10-09 12:32:53 (13728): Status Report: CPU Time: '10494.046875'
2025-10-09 14:13:20 (13728): Status Report: Elapsed Time: '12000.516144'
2025-10-09 14:13:20 (13728): Status Report: CPU Time: '22299.546875'
2025-10-09 15:53:31 (13728): Status Report: Elapsed Time: '18000.516144'
2025-10-09 15:53:31 (13728): Status Report: CPU Time: '34081.953125'
2025-10-09 17:33:55 (13728): Status Report: Elapsed Time: '24000.890779'
2025-10-09 17:33:55 (13728): Status Report: CPU Time: '45866.500000'
2025-10-09 19:14:10 (13728): Status Report: Elapsed Time: '30001.436874'
2025-10-09 19:14:10 (13728): Status Report: CPU Time: '57666.109375'
2025-10-09 20:54:22 (13728): Status Report: Elapsed Time: '36001.436874'
2025-10-09 20:54:22 (13728): Status Report: CPU Time: '69464.015625'
2025-10-09 22:34:35 (13728): Status Report: Elapsed Time: '42001.436874'
2025-10-09 22:34:35 (13728): Status Report: CPU Time: '81267.640625'
2025-10-10 00:14:45 (13728): Status Report: Elapsed Time: '48001.436874'
2025-10-10 00:14:45 (13728): Status Report: CPU Time: '93069.140625'
2025-10-10 01:54:56 (13728): Status Report: Elapsed Time: '54001.436874'
2025-10-10 01:54:56 (13728): Status Report: CPU Time: '104874.546875'
2025-10-10 03:35:15 (13728): Status Report: Elapsed Time: '60002.378618'
2025-10-10 03:35:15 (13728): Status Report: CPU Time: '116690.515625'
2025-10-10 05:15:25 (13728): Status Report: Elapsed Time: '66002.378618'
2025-10-10 05:15:25 (13728): Status Report: CPU Time: '128491.125000'
2025-10-10 06:15:06 (13728): Guest Log:  *** Job finished ***
2025-10-10 06:15:06 (13728): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-10 06:15:06 (13728): Guest Log: 2025-10-10 04:14:47,154 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-10 06:15:06 (13728): Guest Log: 2025-10-10 04:14:47,155 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-10 06:15:06 (13728): Guest Log: 2025-10-10 04:14:58,909 | INFO     | [monitor] cgroup control has ended
2025-10-10 06:15:06 (13728): Guest Log: 2025-10-10 04:14:59,912 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140540928001856)>', '<ExcThread(monitor, started 140540473480960)>']
2025-10-10 06:15:06 (13728): Guest Log: 2025-10-10 04:15:00,206 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-10 06:15:06 (13728): Guest Log: 2025-10-10 04:15:00,206 | INFO     | [monitor] control thread has ended
2025-10-10 06:15:06 (13728): Guest Log: 2025-10-10 04:15:04,918 | INFO     | all workflow threads have been joined
2025-10-10 06:15:06 (13728): Guest Log: 2025-10-10 04:15:04,918 | INFO     | end of generic workflow (traces error code: 0)
2025-10-10 06:15:06 (13728): Guest Log: 2025-10-10 04:15:04,919 | INFO     | traces error code: 0
2025-10-10 06:15:06 (13728): Guest Log: 2025-10-10 04:15:04,919 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-10 06:15:06 (13728): Guest Log: 2025-10-10 04:15:05,126 [wrapper] ==== pilot stdout END ====
2025-10-10 06:15:06 (13728): Guest Log: 2025-10-10 04:15:05,136 [wrapper] ==== wrapper stdout RESUME ====
2025-10-10 06:15:06 (13728): Guest Log: 2025-10-10 04:15:05,147 [wrapper] pilotpid: 5952
2025-10-10 06:15:06 (13728): Guest Log: 2025-10-10 04:15:05,158 [wrapper] Pilot exit status: 0
2025-10-10 06:15:06 (13728): Guest Log: 2025-10-10 04:15:05,256 [wrapper] pandaids: 6832260737
2025-10-10 06:15:06 (13728): Guest Log: 2025-10-10 04:15:05,352 [wrapper] cleanup supervisor_pilot  3458 5953
2025-10-10 06:15:06 (13728): Guest Log: 2025-10-10 04:15:05,364 [wrapper] Test setup, not cleaning
2025-10-10 06:15:06 (13728): Guest Log: 2025-10-10 04:15:05,389 [wrapper] apfmon messages muted
2025-10-10 06:15:06 (13728): Guest Log: 2025-10-10 04:15:05,403 [wrapper] ==== wrapper stdout END ====
2025-10-10 06:15:06 (13728): Guest Log: 2025-10-10 04:15:05,416 [wrapper] ==== wrapper stderr END ====
2025-10-10 06:15:07 (13728): Guest Log:  *** Error codes and diagnostics ***
2025-10-10 06:15:07 (13728): Guest Log:     "exeErrorCode": 0,
2025-10-10 06:15:07 (13728): Guest Log:     "exeErrorDiag": "",
2025-10-10 06:15:07 (13728): Guest Log:     "pilotErrorCode": 0,
2025-10-10 06:15:07 (13728): Guest Log:     "pilotErrorDiag": "",
2025-10-10 06:15:07 (13728): Guest Log:  *** Listing of results directory ***
2025-10-10 06:15:07 (13728): Guest Log: total 204224
2025-10-10 06:15:07 (13728): Guest Log: -rw-r--r--. 1 atlas atlas    552446 Oct  6 02:53 pilot3.tar.gz
2025-10-10 06:15:07 (13728): Guest Log: -rwx------. 1 atlas atlas     36292 Oct  6 03:15 runpilot2-wrapper.sh
2025-10-10 06:15:07 (13728): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct  6 03:15 queuedata.json
2025-10-10 06:15:07 (13728): Guest Log: -rwxr-xr-x. 1 atlas atlas      8446 Oct  9 08:53 init_data.xml
2025-10-10 06:15:07 (13728): Guest Log: -rwxr-xr-x. 1 atlas atlas    565604 Oct  9 08:53 input.tar.gz
2025-10-10 06:15:07 (13728): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct  9 08:53 start_atlas.sh
2025-10-10 06:15:07 (13728): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct  9 08:53 EVNT.46376901._003847.pool.root.1 -> /data/./ATLAS.root_0
2025-10-10 06:15:07 (13728): Guest Log: -rw-r--r--. 1 atlas atlas      2519 Oct  9 08:54 pandaJob.out
2025-10-10 06:15:07 (13728): Guest Log: -rw-------. 1 atlas atlas    979274 Oct  9 08:55 agis_schedconf.cvmfs.json
2025-10-10 06:15:07 (13728): Guest Log: drwx------. 4 atlas atlas      4096 Oct  9 08:55 pilot3
2025-10-10 06:15:07 (13728): Guest Log: -rw-------. 1 atlas atlas 184764555 Oct 10 04:12 HITS.46376905._103915.pool.root.1
2025-10-10 06:15:07 (13728): Guest Log: -rw-------. 1 atlas atlas      1029 Oct 10 04:13 memory_monitor_summary.json
2025-10-10 06:15:07 (13728): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 10 04:13 agis_ddmendpoints.agis.ALL.json
2025-10-10 06:15:07 (13728): Guest Log: -rw-------. 1 atlas atlas   1116036 Oct 10 04:13 log.46376905._103915.job.log.tgz.1
2025-10-10 06:15:07 (13728): Guest Log: -rw-------. 1 atlas atlas      7798 Oct 10 04:14 heartbeat.json
2025-10-10 06:15:07 (13728): Guest Log: -rw-------. 1 atlas atlas        95 Oct 10 04:14 pilot_heartbeat.json
2025-10-10 06:15:07 (13728): Guest Log: -rw-------. 1 atlas atlas      4991 Oct 10 04:15 pilotlog.txt
2025-10-10 06:15:07 (13728): Guest Log: -rw-------. 1 atlas atlas   9147860 Oct 10 04:15 log.46376905._103915.job.log.1
2025-10-10 06:15:07 (13728): Guest Log: -rw-------. 1 atlas atlas       357 Oct 10 04:15 output.list
2025-10-10 06:15:07 (13728): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 10 04:15 runtime_log
2025-10-10 06:15:07 (13728): Guest Log: -rw-------. 1 atlas atlas  10280960 Oct 10 04:15 result.tar.gz
2025-10-10 06:15:07 (13728): Guest Log: -rw-r--r--. 1 atlas atlas      8636 Oct 10 04:15 runtime_log.err
2025-10-10 06:15:07 (13728): Guest Log: -rw-------. 1 atlas atlas       663 Oct 10 04:15 PwfLDmisqP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm8LSNDmgfUUXm.diag
2025-10-10 06:15:07 (13728): Guest Log: Looking for outputfile HITS.46376905._103915.pool.root.1
2025-10-10 06:15:07 (13728): Guest Log: HITS file was successfully produced
2025-10-10 06:15:07 (13728): Guest Log: -rw-------. 1 atlas atlas 184764555 Oct 10 04:12 /home/atlas/RunAtlas/HITS.46376905._103915.pool.root.1
2025-10-10 06:15:10 (13728): Guest Log: Successfully finished the ATLAS job!
2025-10-10 06:15:10 (13728): Guest Log: Copying the results back to the shared directory!
2025-10-10 06:15:10 (13728): Guest Log:  *** Contents of shared directory: ***
2025-10-10 06:15:10 (13728): Guest Log: total 400660
2025-10-10 06:15:10 (13728): Guest Log: -rwxrwxrwx. 1 root root 214628701 Oct  9 08:52 ATLAS.root_0
2025-10-10 06:15:10 (13728): Guest Log: -rwxrwxrwx. 1 root root 184764555 Oct 10 04:15 HITS.pool.root.1
2025-10-10 06:15:10 (13728): Guest Log: -rwxrwxrwx. 1 root root      8446 Oct  9 08:52 init_data.xml
2025-10-10 06:15:10 (13728): Guest Log: -rwxrwxrwx. 1 root root    565604 Oct  6 08:19 input.tar.gz
2025-10-10 06:15:10 (13728): Guest Log: -rwxrwxrwx. 1 root root  10280960 Oct 10 04:15 result.tar.gz
2025-10-10 06:15:10 (13728): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct  6 08:19 start_atlas.sh
2025-10-10 06:15:10 (13728): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-10 06:15:10 (13728): VM Completion File Detected.
2025-10-10 06:15:10 (13728): Powering off VM.
2025-10-10 06:15:11 (13728): Successfully stopped VM.
2025-10-10 06:15:11 (13728): Deregistering VM. (boinc_3f3ffbf3c030e57f, slot#0)
2025-10-10 06:15:12 (13728): Removing network bandwidth throttle group from VM.
2025-10-10 06:15:12 (13728): Removing VM from VirtualBox.
2025-10-10 06:15:17 (13728): called boinc_finish(0)

</stderr_txt>
]]>

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