Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-07 14:18:32 (4004): vboxwrapper version 26210
2025-10-07 14:18:32 (4004): BOINC client version: 8.0.2
2025-10-07 14:18:32 (4004): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2025-10-07 14:18:33 (4004): Successfully copied 'init_data.xml' to the shared directory.
2025-10-07 14:18:33 (4004): Create VM. (boinc_cb359aacd1f997d8, slot#0)
2025-10-07 14:18:34 (4004): Setting Memory Size for VM. (4400MB)
2025-10-07 14:18:34 (4004): Setting CPU Count for VM. (4)
2025-10-07 14:18:34 (4004): Setting Chipset Options for VM.
2025-10-07 14:18:35 (4004): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-07 14:18:35 (4004): Setting Boot Options for VM.
2025-10-07 14:18:36 (4004): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-07 14:18:36 (4004): Enabling VM Network Access.
2025-10-07 14:18:36 (4004): Disabling USB Support for VM.
2025-10-07 14:18:36 (4004): Disabling COM Port Support for VM.
2025-10-07 14:18:37 (4004): Disabling LPT Port Support for VM.
2025-10-07 14:18:37 (4004): Disabling Audio Support for VM.
2025-10-07 14:18:37 (4004): Disabling Clipboard Support for VM.
2025-10-07 14:18:37 (4004): Disabling Drag and Drop Support for VM.
2025-10-07 14:18:38 (4004): Adding storage controller(s) to VM.
2025-10-07 14:18:38 (4004): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-07 14:18:41 (4004): Adding VirtualBox Guest Additions to VM.
2025-10-07 14:18:41 (4004): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-07 14:18:41 (4004): forwarding host port 55542 to guest port 80
2025-10-07 14:18:41 (4004): Enabling remote desktop for VM.
2025-10-07 14:18:42 (4004): Required extension pack not installed, remote desktop not enabled.
2025-10-07 14:18:42 (4004): Enabling shared directory for VM.
2025-10-07 14:18:42 (4004): Starting VM using VBoxManage interface. (boinc_cb359aacd1f997d8, slot#0)
2025-10-07 14:18:52 (4004): Successfully started VM. (PID = '18204')
2025-10-07 14:18:52 (4004): Reporting VM Process ID to BOINC.
2025-10-07 14:18:52 (4004): Guest Log: BIOS: VirtualBox 7.1.4
2025-10-07 14:18:52 (4004): Guest Log: CPUID EDX: 0x178bfbff
2025-10-07 14:18:52 (4004): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-07 14:18:52 (4004): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-07 14:18:52 (4004): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-07 14:18:52 (4004): Detected: Web Application Enabled (http://localhost:55542)
2025-10-07 14:18:52 (4004): Preference change detected
2025-10-07 14:18:52 (4004): Setting CPU throttle for VM. (100%)
2025-10-07 14:18:53 (4004): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-07 14:18:55 (4004): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-07 14:18:55 (4004): Guest Log: BIOS: Booting from Hard Disk...
2025-10-07 14:19:01 (4004): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-07 14:19:01 (4004): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-07 14:19:01 (4004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-07 14:19:01 (4004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-07 14:19:01 (4004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-07 14:19:01 (4004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-07 14:19:01 (4004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-07 14:19:01 (4004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-07 14:19:01 (4004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-07 14:19:01 (4004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-07 14:19:01 (4004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-07 14:19:01 (4004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-07 14:19:01 (4004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-07 14:19:01 (4004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-07 14:19:01 (4004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-07 14:19:01 (4004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-07 14:19:01 (4004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-07 14:19:01 (4004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-07 14:19:01 (4004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-07 14:19:01 (4004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-07 14:19:01 (4004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-07 14:19:01 (4004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-07 14:19:01 (4004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-07 14:19:01 (4004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-07 14:19:01 (4004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-07 14:19:01 (4004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-07 14:19:01 (4004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-07 14:19:01 (4004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-07 14:19:01 (4004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-07 14:19:01 (4004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-07 14:19:01 (4004): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-07 14:19:01 (4004): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-07 14:19:18 (4004): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-07 14:19:18 (4004): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-07 14:19:54 (4004): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-07 14:19:54 (4004): Guest Log: 00:00:00.000215 main     Log opened 2025-10-07T14:19:52.162151000Z
2025-10-07 14:19:54 (4004): Guest Log: 00:00:00.000428 main     OS Product: Linux
2025-10-07 14:19:54 (4004): Guest Log: 00:00:00.000667 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-07 14:19:54 (4004): Guest Log: 00:00:00.000750 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-07 14:19:54 (4004): Guest Log: 00:00:00.000827 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-07 14:19:54 (4004): Guest Log: 00:00:00.000829 main     Process ID: 1317
2025-10-07 14:19:54 (4004): Guest Log: 00:00:00.000831 main     Package type: LINUX_64BITS_GENERIC
2025-10-07 14:19:54 (4004): Guest Log: 00:00:00.004010 main     5.2.32 r132073 started. Verbose level = 0
2025-10-07 14:19:55 (4004): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-07 14:19:55 (4004): Guest Log: [INFO] Mounting shared directory
2025-10-07 14:19:55 (4004): Guest Log: [INFO] Checking for init_data.xml
2025-10-07 14:20:02 (4004): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-07 14:20:02 (4004): Guest Log: [INFO] Detected branch: prod
2025-10-07 14:20:02 (4004): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-07 14:20:02 (4004): Guest Log: Copying input files
2025-10-07 14:20:04 (4004): Guest Log: 00:00:10.008992 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 788 300 007 000ns (GuestNow=1 759 836 003 870 377 000 ns GuestLast=1 759 846 792 170 384 000 ns fSetTimeLastLoop=true )
2025-10-07 14:20:06 (4004): Guest Log: Copied input files into RunAtlas.
2025-10-07 14:20:06 (4004): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-07 14:20:06 (4004): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-07 14:20:06 (4004): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-07 14:20:06 (4004): Guest Log: Further information can be found at the LHC@home message board.
2025-10-07 14:20:40 (4004): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-07 14:20:40 (4004): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-07 14:20:40 (4004): Guest Log: 2.6.3.0 1597 0 32204 151434 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-07 14:20:46 (4004): Guest Log: copied the webapp to /var/www
2025-10-07 14:20:46 (4004): Guest Log: ATHENA_PROC_NUMBER=4
2025-10-07 14:20:46 (4004): Guest Log: ATHENA_CORE_NUMBER=4
2025-10-07 14:20:47 (4004): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-07 14:20:47 (4004): Guest Log:  *** Starting ATLAS job. (PandaID=6832084453 taskID=46376905) ***
2025-10-07 16:03:25 (4004): Status Report: Elapsed Time: '6000.198664'
2025-10-07 16:03:25 (4004): Status Report: CPU Time: '20455.968750'
2025-10-07 17:45:07 (4004): Status Report: Elapsed Time: '12000.622137'
2025-10-07 17:45:07 (4004): Status Report: CPU Time: '43615.968750'
2025-10-07 19:27:37 (4004): Status Report: Elapsed Time: '18001.607365'
2025-10-07 19:27:37 (4004): Status Report: CPU Time: '66977.593750'
2025-10-07 21:09:22 (4004): Status Report: Elapsed Time: '24003.306665'
2025-10-07 21:09:23 (4004): Status Report: CPU Time: '90157.921875'
2025-10-07 22:53:29 (4004): Status Report: Elapsed Time: '30004.176384'
2025-10-07 22:53:29 (4004): Status Report: CPU Time: '113647.687500'
2025-10-08 00:36:25 (4004): Status Report: Elapsed Time: '36004.317514'
2025-10-08 00:36:27 (4004): Status Report: CPU Time: '136928.125000'
2025-10-08 01:39:55 (4004): Guest Log:  *** Job finished ***
2025-10-08 01:39:55 (4004): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-08 01:39:55 (4004): Guest Log: 2025-10-07 22:39:20,198 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-08 01:39:55 (4004): Guest Log: 2025-10-07 22:39:20,199 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-08 01:39:55 (4004): Guest Log: 2025-10-07 22:39:46,836 | INFO     | [monitor] cgroup control has ended
2025-10-08 01:39:55 (4004): Guest Log: 2025-10-07 22:39:47,475 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140373419345728)>', '<ExcThread(monitor, started 140373112366848)>']
2025-10-08 01:39:55 (4004): Guest Log: 2025-10-07 22:39:48,304 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-08 01:39:55 (4004): Guest Log: 2025-10-07 22:39:48,305 | INFO     | [monitor] control thread has ended
2025-10-08 01:39:55 (4004): Guest Log: 2025-10-07 22:39:52,482 | INFO     | all workflow threads have been joined
2025-10-08 01:39:55 (4004): Guest Log: 2025-10-07 22:39:52,483 | INFO     | end of generic workflow (traces error code: 0)
2025-10-08 01:39:55 (4004): Guest Log: 2025-10-07 22:39:52,485 | INFO     | traces error code: 0
2025-10-08 01:39:55 (4004): Guest Log: 2025-10-07 22:39:52,486 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-08 01:39:55 (4004): Guest Log: 2025-10-07 22:39:52,775 [wrapper] ==== pilot stdout END ====
2025-10-08 01:39:55 (4004): Guest Log: 2025-10-07 22:39:52,784 [wrapper] ==== wrapper stdout RESUME ====
2025-10-08 01:39:55 (4004): Guest Log: 2025-10-07 22:39:52,793 [wrapper] pilotpid: 6004
2025-10-08 01:39:55 (4004): Guest Log: 2025-10-07 22:39:52,802 [wrapper] Pilot exit status: 0
2025-10-08 01:39:55 (4004): Guest Log: 2025-10-07 22:39:52,879 [wrapper] pandaids: 6832084453
2025-10-08 01:39:55 (4004): Guest Log: 2025-10-07 22:39:52,943 [wrapper] cleanup supervisor_pilot 18696 6005
2025-10-08 01:39:55 (4004): Guest Log: 2025-10-07 22:39:52,953 [wrapper] Test setup, not cleaning
2025-10-08 01:39:55 (4004): Guest Log: 2025-10-07 22:39:52,963 [wrapper] apfmon messages muted
2025-10-08 01:39:55 (4004): Guest Log: 2025-10-07 22:39:52,973 [wrapper] ==== wrapper stdout END ====
2025-10-08 01:39:55 (4004): Guest Log: 2025-10-07 22:39:52,984 [wrapper] ==== wrapper stderr END ====
2025-10-08 01:39:55 (4004): Guest Log:  *** Error codes and diagnostics ***
2025-10-08 01:39:55 (4004): Guest Log:     "exeErrorCode": 0,
2025-10-08 01:39:55 (4004): Guest Log:     "exeErrorDiag": "",
2025-10-08 01:39:55 (4004): Guest Log:     "pilotErrorCode": 0,
2025-10-08 01:39:55 (4004): Guest Log:     "pilotErrorDiag": "",
2025-10-08 01:39:55 (4004): Guest Log:  *** Listing of results directory ***
2025-10-08 01:39:55 (4004): Guest Log: total 188188
2025-10-08 01:39:55 (4004): Guest Log: -rw-r--r--. 1 atlas atlas    552446 Oct  5 23:27 pilot3.tar.gz
2025-10-08 01:39:55 (4004): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct  5 23:45 queuedata.json
2025-10-08 01:39:55 (4004): Guest Log: -rwx------. 1 atlas atlas     36292 Oct  5 23:46 runpilot2-wrapper.sh
2025-10-08 01:39:55 (4004): Guest Log: -rwxr-xr-x. 1 atlas atlas      8220 Oct  7 11:20 init_data.xml
2025-10-08 01:39:55 (4004): Guest Log: -rwxr-xr-x. 1 atlas atlas    565601 Oct  7 11:20 input.tar.gz
2025-10-08 01:39:55 (4004): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct  7 11:20 start_atlas.sh
2025-10-08 01:39:55 (4004): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct  7 11:20 EVNT.46376901._003684.pool.root.1 -> /data/./ATLAS.root_0
2025-10-08 01:39:55 (4004): Guest Log: -rw-r--r--. 1 atlas atlas      2517 Oct  7 11:20 pandaJob.out
2025-10-08 01:39:55 (4004): Guest Log: -rw-------. 1 atlas atlas    975010 Oct  7 11:21 agis_schedconf.cvmfs.json
2025-10-08 01:39:55 (4004): Guest Log: drwx------. 4 atlas atlas      4096 Oct  7 11:22 pilot3
2025-10-08 01:39:55 (4004): Guest Log: -rw-------. 1 atlas atlas 177130914 Oct  7 22:37 HITS.46376905._099666.pool.root.1
2025-10-08 01:39:55 (4004): Guest Log: -rw-------. 1 atlas atlas      1043 Oct  7 22:38 memory_monitor_summary.json
2025-10-08 01:39:55 (4004): Guest Log: -rw-------. 1 atlas atlas   1560401 Oct  7 22:38 agis_ddmendpoints.agis.ALL.json
2025-10-08 01:39:55 (4004): Guest Log: -rw-------. 1 atlas atlas    723897 Oct  7 22:38 log.46376905._099666.job.log.tgz.1
2025-10-08 01:39:55 (4004): Guest Log: -rw-------. 1 atlas atlas      7792 Oct  7 22:38 heartbeat.json
2025-10-08 01:39:55 (4004): Guest Log: -rw-------. 1 atlas atlas        95 Oct  7 22:39 pilot_heartbeat.json
2025-10-08 01:39:55 (4004): Guest Log: -rw-------. 1 atlas atlas      4805 Oct  7 22:39 pilotlog.txt
2025-10-08 01:39:55 (4004): Guest Log: -rw-------. 1 atlas atlas   5156483 Oct  7 22:39 log.46376905._099666.job.log.1
2025-10-08 01:39:55 (4004): Guest Log: -rw-------. 1 atlas atlas       357 Oct  7 22:39 output.list
2025-10-08 01:39:55 (4004): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct  7 22:39 runtime_log
2025-10-08 01:39:55 (4004): Guest Log: -rw-------. 1 atlas atlas   5898240 Oct  7 22:39 result.tar.gz
2025-10-08 01:39:55 (4004): Guest Log: -rw-------. 1 atlas atlas       667 Oct  7 22:39 v6XMDmbbnP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmchRNDmCgJJYo.diag
2025-10-08 01:39:55 (4004): Guest Log: -rw-r--r--. 1 atlas atlas      8648 Oct  7 22:39 runtime_log.err
2025-10-08 01:39:55 (4004): Guest Log: Looking for outputfile HITS.46376905._099666.pool.root.1
2025-10-08 01:39:55 (4004): Guest Log: HITS file was successfully produced
2025-10-08 01:39:55 (4004): Guest Log: -rw-------. 1 atlas atlas 177130914 Oct  7 22:37 /home/atlas/RunAtlas/HITS.46376905._099666.pool.root.1
2025-10-08 01:39:59 (4004): Guest Log: Successfully finished the ATLAS job!
2025-10-08 01:39:59 (4004): Guest Log: Copying the results back to the shared directory!
2025-10-08 01:39:59 (4004): Guest Log:  *** Contents of shared directory: ***
2025-10-08 01:40:00 (4004): Guest Log: total 389008
2025-10-08 01:40:00 (4004): Guest Log: -rwxrwxrwx. 1 root root 214713433 Oct  7 11:18 ATLAS.root_0
2025-10-08 01:40:00 (4004): Guest Log: -rwxrwxrwx. 1 root root 177130914 Oct  7 22:39 HITS.pool.root.1
2025-10-08 01:40:00 (4004): Guest Log: -rwxrwxrwx. 1 root root      8220 Oct  7 11:18 init_data.xml
2025-10-08 01:40:00 (4004): Guest Log: -rwxrwxrwx. 1 root root    565601 Oct  6 05:28 input.tar.gz
2025-10-08 01:40:00 (4004): Guest Log: -rwxrwxrwx. 1 root root   5898240 Oct  7 22:39 result.tar.gz
2025-10-08 01:40:00 (4004): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct  6 05:28 start_atlas.sh
2025-10-08 01:40:00 (4004): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-08 01:40:00 (4004): VM Completion File Detected.
2025-10-08 01:40:00 (4004): Powering off VM.
2025-10-08 01:40:04 (4004): Successfully stopped VM.
2025-10-08 01:40:04 (4004): Deregistering VM. (boinc_cb359aacd1f997d8, slot#0)
2025-10-08 01:40:04 (4004): Removing network bandwidth throttle group from VM.
2025-10-08 01:40:04 (4004): Removing VM from VirtualBox.
2025-10-08 01:40:10 (4004): called boinc_finish(0)

</stderr_txt>
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