Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-07 10:18:09 (2572): vboxwrapper version 26210
2025-10-07 10:18:09 (2572): BOINC client version: 7.16.20
2025-10-07 10:18:10 (2572): Detected: VirtualBox VboxManage Interface (Version: 6.1.32)
2025-10-07 10:18:10 (2572): Successfully copied 'init_data.xml' to the shared directory.
2025-10-07 10:18:11 (2572): Create VM. (boinc_dc2f39dc8847fa66, slot#1)
2025-10-07 10:18:11 (2572): Setting Memory Size for VM. (4800MB)
2025-10-07 10:18:11 (2572): Setting CPU Count for VM. (8)
2025-10-07 10:18:12 (2572): Setting Chipset Options for VM.
2025-10-07 10:18:12 (2572): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-07 10:18:12 (2572): Setting Boot Options for VM.
2025-10-07 10:18:13 (2572): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-07 10:18:13 (2572): Enabling VM Network Access.
2025-10-07 10:18:13 (2572): Disabling USB Support for VM.
2025-10-07 10:18:13 (2572): Disabling COM Port Support for VM.
2025-10-07 10:18:14 (2572): Disabling LPT Port Support for VM.
2025-10-07 10:18:14 (2572): Disabling Audio Support for VM.
2025-10-07 10:18:14 (2572): Disabling Clipboard Support for VM.
2025-10-07 10:18:15 (2572): Disabling Drag and Drop Support for VM.
2025-10-07 10:18:15 (2572): Adding storage controller(s) to VM.
2025-10-07 10:18:15 (2572): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-07 10:18:16 (2572): Adding VirtualBox Guest Additions to VM.
2025-10-07 10:18:16 (2572): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-07 10:18:17 (2572): forwarding host port 5698 to guest port 80
2025-10-07 10:18:17 (2572): Enabling remote desktop for VM.
2025-10-07 10:18:17 (2572): Required extension pack not installed, remote desktop not enabled.
2025-10-07 10:18:17 (2572): Enabling shared directory for VM.
2025-10-07 10:18:18 (2572): Starting VM using VBoxManage interface. (boinc_dc2f39dc8847fa66, slot#1)
2025-10-07 10:18:23 (2572): Successfully started VM. (PID = '10968')
2025-10-07 10:18:23 (2572): Reporting VM Process ID to BOINC.
2025-10-07 10:18:23 (2572): Guest Log: BIOS: VirtualBox 6.1.32
2025-10-07 10:18:23 (2572): Guest Log: CPUID EDX: 0x178bfbff
2025-10-07 10:18:23 (2572): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-07 10:18:23 (2572): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-07 10:18:23 (2572): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-07 10:18:23 (2572): Detected: Web Application Enabled (http://localhost:5698)
2025-10-07 10:18:23 (2572): Preference change detected
2025-10-07 10:18:23 (2572): Setting CPU throttle for VM. (15%)
2025-10-07 10:18:23 (2572): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-07 10:18:25 (2572): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-07 10:18:25 (2572): Guest Log: BIOS: Booting from Hard Disk...
2025-10-07 10:18:31 (2572): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-07 10:18:31 (2572): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-07 10:18:31 (2572): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-07 10:18:31 (2572): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-07 10:18:31 (2572): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-07 10:18:31 (2572): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-07 10:18:31 (2572): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-07 10:18:31 (2572): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-07 10:18:31 (2572): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-07 10:18:31 (2572): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-07 10:18:31 (2572): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-07 10:18:31 (2572): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-07 10:18:31 (2572): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-07 10:18:31 (2572): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-07 10:18:31 (2572): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-07 10:18:31 (2572): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-07 10:18:31 (2572): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-07 10:18:31 (2572): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-07 10:18:31 (2572): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-07 10:18:31 (2572): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-07 10:18:31 (2572): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-07 10:18:31 (2572): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-07 10:18:31 (2572): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-07 10:18:31 (2572): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-07 10:18:31 (2572): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-07 10:18:31 (2572): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-07 10:18:31 (2572): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-07 10:18:31 (2572): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-07 10:18:31 (2572): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-07 10:18:31 (2572): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-07 10:18:31 (2572): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-07 10:18:31 (2572): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-07 10:18:54 (2572): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-07 10:18:54 (2572): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-10-07 10:19:32 (2572): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-07 10:19:32 (2572): Guest Log: 00:00:00.000142 main     Log opened 2025-10-07T10:19:30.478827000Z
2025-10-07 10:19:32 (2572): Guest Log: 00:00:00.000200 main     OS Product: Linux
2025-10-07 10:19:32 (2572): Guest Log: 00:00:00.000213 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-07 10:19:32 (2572): Guest Log: 00:00:00.000225 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-07 10:19:32 (2572): Guest Log: 00:00:00.000236 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-07 10:19:32 (2572): Guest Log: 00:00:00.000237 main     Process ID: 1376
2025-10-07 10:19:32 (2572): Guest Log: 00:00:00.000237 main     Package type: LINUX_64BITS_GENERIC
2025-10-07 10:19:32 (2572): Guest Log: 00:00:00.000691 main     5.2.32 r132073 started. Verbose level = 0
2025-10-07 10:19:32 (2572): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-07 10:19:32 (2572): Guest Log: [INFO] Mounting shared directory
2025-10-07 10:19:33 (2572): Guest Log: [INFO] Checking for init_data.xml
2025-10-07 10:19:38 (2572): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-07 10:19:38 (2572): Guest Log: [INFO] Detected branch: prod
2025-10-07 10:19:39 (2572): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-07 10:19:39 (2572): Guest Log: Copying input files
2025-10-07 10:19:42 (2572): Guest Log: 00:00:10.178972 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 788 868 274 000ns (GuestNow=1 759 821 581 612 179 000 ns GuestLast=1 759 832 370 480 453 000 ns fSetTimeLastLoop=true )
2025-10-07 10:19:45 (2572): Guest Log: Copied input files into RunAtlas.
2025-10-07 10:19:46 (2572): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-07 10:19:46 (2572): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-07 10:19:46 (2572): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-07 10:19:46 (2572): Guest Log: Further information can be found at the LHC@home message board.
2025-10-07 10:19:56 (2572): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-07 10:19:58 (2572): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-07 10:19:58 (2572): Guest Log: 2.6.3.0 1650 0 30172 151429 3 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-07 10:19:59 (2572): Guest Log: copied the webapp to /var/www
2025-10-07 10:20:00 (2572): Guest Log: ATHENA_PROC_NUMBER=8
2025-10-07 10:20:00 (2572): Guest Log: ATHENA_CORE_NUMBER=8
2025-10-07 10:20:01 (2572): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-07 10:20:01 (2572): Guest Log:  *** Starting ATLAS job. (PandaID=6832049315 taskID=46376905) ***
2025-10-07 11:33:23 (2572): VM state change detected. (old = 'running', new = 'paused')
2025-10-07 11:33:33 (2572): VM state change detected. (old = 'paused', new = 'running')
2025-10-07 11:34:54 (2572): VM state change detected. (old = 'running', new = 'paused')
2025-10-07 11:35:04 (2572): VM state change detected. (old = 'paused', new = 'running')
2025-10-07 11:38:24 (2572): VM state change detected. (old = 'running', new = 'paused')
2025-10-07 11:38:34 (2572): VM state change detected. (old = 'paused', new = 'running')
2025-10-07 11:59:05 (2572): Status Report: Elapsed Time: '6000.000000'
2025-10-07 11:59:05 (2572): Status Report: CPU Time: '5320.359375'
2025-10-07 13:39:16 (2572): Status Report: Elapsed Time: '12000.000000'
2025-10-07 13:39:16 (2572): Status Report: CPU Time: '12345.703125'
2025-10-07 14:36:52 (2572): VM state change detected. (old = 'running', new = 'paused')
2025-10-07 14:37:02 (2572): VM state change detected. (old = 'paused', new = 'running')
2025-10-07 14:40:33 (2572): VM state change detected. (old = 'running', new = 'paused')
2025-10-07 14:40:43 (2572): VM state change detected. (old = 'paused', new = 'running')
2025-10-07 15:07:03 (2572): VM state change detected. (old = 'running', new = 'paused')
2025-10-07 15:07:14 (2572): VM state change detected. (old = 'paused', new = 'running')
2025-10-07 15:20:00 (2572): Status Report: Elapsed Time: '18000.000000'
2025-10-07 15:20:00 (2572): Status Report: CPU Time: '19401.125000'
2025-10-07 15:33:26 (2572): VM state change detected. (old = 'running', new = 'paused')
2025-10-07 15:33:36 (2572): VM state change detected. (old = 'paused', new = 'running')
2025-10-07 15:50:58 (2572): VM state change detected. (old = 'running', new = 'paused')
2025-10-07 15:51:08 (2572): VM state change detected. (old = 'paused', new = 'running')
2025-10-07 16:18:14 (2572): Guest Log:  *** Job finished ***
2025-10-07 16:18:14 (2572): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-07 16:18:15 (2572): Guest Log: 2025-10-07 13:16:38,073 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-07 16:18:15 (2572): Guest Log: 2025-10-07 13:16:38,073 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-07 16:18:15 (2572): Guest Log: 2025-10-07 13:16:53,825 | INFO     | [monitor] cgroup control has ended
2025-10-07 16:18:15 (2572): Guest Log: 2025-10-07 13:16:55,068 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140094660728640)>', '<ExcThread(monitor, started 140093713020672)>']
2025-10-07 16:18:15 (2572): Guest Log: 2025-10-07 13:16:55,280 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-07 16:18:15 (2572): Guest Log: 2025-10-07 13:16:55,281 | INFO     | [monitor] control thread has ended
2025-10-07 16:18:15 (2572): Guest Log: 2025-10-07 13:17:00,100 | INFO     | all workflow threads have been joined
2025-10-07 16:18:15 (2572): Guest Log: 2025-10-07 13:17:00,101 | INFO     | end of generic workflow (traces error code: 0)
2025-10-07 16:18:15 (2572): Guest Log: 2025-10-07 13:17:00,101 | INFO     | traces error code: 0
2025-10-07 16:18:15 (2572): Guest Log: 2025-10-07 13:17:00,101 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-07 16:18:15 (2572): Guest Log: 2025-10-07 13:17:00,527 [wrapper] ==== pilot stdout END ====
2025-10-07 16:18:15 (2572): Guest Log: 2025-10-07 13:17:00,530 [wrapper] ==== wrapper stdout RESUME ====
2025-10-07 16:18:15 (2572): Guest Log: 2025-10-07 13:17:00,532 [wrapper] pilotpid: 6086
2025-10-07 16:18:15 (2572): Guest Log: 2025-10-07 13:17:00,534 [wrapper] Pilot exit status: 0
2025-10-07 16:18:15 (2572): Guest Log: 2025-10-07 13:17:01,139 [wrapper] pandaids: 6832049315
2025-10-07 16:18:15 (2572): Guest Log: 2025-10-07 13:17:01,348 [wrapper] cleanup supervisor_pilot 10625 6087
2025-10-07 16:18:15 (2572): Guest Log: 2025-10-07 13:17:01,354 [wrapper] Test setup, not cleaning
2025-10-07 16:18:15 (2572): Guest Log: 2025-10-07 13:17:01,367 [wrapper] apfmon messages muted
2025-10-07 16:18:15 (2572): Guest Log: 2025-10-07 13:17:01,373 [wrapper] ==== wrapper stdout END ====
2025-10-07 16:18:15 (2572): Guest Log: 2025-10-07 13:17:01,454 [wrapper] ==== wrapper stderr END ====
2025-10-07 16:18:15 (2572): Guest Log:  *** Error codes and diagnostics ***
2025-10-07 16:18:15 (2572): Guest Log:     "exeErrorCode": 0,
2025-10-07 16:18:15 (2572): Guest Log:     "exeErrorDiag": "",
2025-10-07 16:18:15 (2572): Guest Log:     "pilotErrorCode": 0,
2025-10-07 16:18:15 (2572): Guest Log:     "pilotErrorDiag": "",
2025-10-07 16:18:15 (2572): Guest Log:  *** Listing of results directory ***
2025-10-07 16:18:15 (2572): Guest Log: total 183200
2025-10-07 16:18:15 (2572): Guest Log: -rw-r--r--. 1 atlas atlas    552446 Oct  5 22:14 pilot3.tar.gz
2025-10-07 16:18:15 (2572): Guest Log: -rwx------. 1 atlas atlas     36292 Oct  5 22:34 runpilot2-wrapper.sh
2025-10-07 16:18:15 (2572): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct  5 22:34 queuedata.json
2025-10-07 16:18:15 (2572): Guest Log: -rwxr-xr-x. 1 atlas atlas     11680 Oct  7 07:19 init_data.xml
2025-10-07 16:18:15 (2572): Guest Log: -rwxr-xr-x. 1 atlas atlas    565596 Oct  7 07:19 input.tar.gz
2025-10-07 16:18:15 (2572): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct  7 07:19 start_atlas.sh
2025-10-07 16:18:15 (2572): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct  7 07:19 EVNT.46376901._003626.pool.root.1 -> /data/./ATLAS.root_0
2025-10-07 16:18:15 (2572): Guest Log: -rw-r--r--. 1 atlas atlas      2519 Oct  7 07:20 pandaJob.out
2025-10-07 16:18:15 (2572): Guest Log: -rw-------. 1 atlas atlas    974976 Oct  7 07:22 agis_schedconf.cvmfs.json
2025-10-07 16:18:15 (2572): Guest Log: drwx------. 4 atlas atlas      4096 Oct  7 07:22 pilot3
2025-10-07 16:18:15 (2572): Guest Log: -rw-------. 1 atlas atlas 179554380 Oct  7 13:13 HITS.46376905._098199.pool.root.1
2025-10-07 16:18:15 (2572): Guest Log: -rw-------. 1 atlas atlas      1027 Oct  7 13:15 memory_monitor_summary.json
2025-10-07 16:18:15 (2572): Guest Log: -rw-------. 1 atlas atlas   1560401 Oct  7 13:15 agis_ddmendpoints.agis.ALL.json
2025-10-07 16:18:15 (2572): Guest Log: -rw-------. 1 atlas atlas    459291 Oct  7 13:15 log.46376905._098199.job.log.tgz.1
2025-10-07 16:18:15 (2572): Guest Log: -rw-------. 1 atlas atlas        96 Oct  7 13:15 pilot_heartbeat.json
2025-10-07 16:18:15 (2572): Guest Log: -rw-------. 1 atlas atlas      7824 Oct  7 13:16 heartbeat.json
2025-10-07 16:18:15 (2572): Guest Log: -rw-------. 1 atlas atlas      4991 Oct  7 13:17 pilotlog.txt
2025-10-07 16:18:15 (2572): Guest Log: -rw-------. 1 atlas atlas   1650849 Oct  7 13:17 log.46376905._098199.job.log.1
2025-10-07 16:18:15 (2572): Guest Log: -rw-------. 1 atlas atlas       357 Oct  7 13:17 output.list
2025-10-07 16:18:15 (2572): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct  7 13:17 runtime_log
2025-10-07 16:18:15 (2572): Guest Log: -rw-------. 1 atlas atlas   2129920 Oct  7 13:17 result.tar.gz
2025-10-07 16:18:15 (2572): Guest Log: -rw-r--r--. 1 atlas atlas      8637 Oct  7 13:17 runtime_log.err
2025-10-07 16:18:15 (2572): Guest Log: -rw-------. 1 atlas atlas       658 Oct  7 13:17 Jj1LDmgUmP8n9Rq4apOajLDm4fhM0noT9bVof3QYDmQmHMDmWYx81n.diag
2025-10-07 16:18:15 (2572): Guest Log: Looking for outputfile HITS.46376905._098199.pool.root.1
2025-10-07 16:18:15 (2572): Guest Log: HITS file was successfully produced
2025-10-07 16:18:15 (2572): Guest Log: -rw-------. 1 atlas atlas 179554380 Oct  7 13:13 /home/atlas/RunAtlas/HITS.46376905._098199.pool.root.1
2025-10-07 16:18:21 (2572): Guest Log: Successfully finished the ATLAS job!
2025-10-07 16:18:21 (2572): Guest Log: Copying the results back to the shared directory!
2025-10-07 16:18:22 (2572): Guest Log:  *** Contents of shared directory: ***
2025-10-07 16:18:22 (2572): Guest Log: total 386168
2025-10-07 16:18:22 (2572): Guest Log: -rwxrwxrwx. 1 root root 213149819 Oct  7 07:18 ATLAS.root_0
2025-10-07 16:18:22 (2572): Guest Log: -rwxrwxrwx. 1 root root 179554380 Oct  7  2025 HITS.pool.root.1
2025-10-07 16:18:22 (2572): Guest Log: -rwxrwxrwx. 1 root root     11680 Oct  7 07:18 init_data.xml
2025-10-07 16:18:22 (2572): Guest Log: -rwxrwxrwx. 1 root root    565596 Oct  6 05:21 input.tar.gz
2025-10-07 16:18:22 (2572): Guest Log: -rwxrwxrwx. 1 root root   2129920 Oct  7  2025 result.tar.gz
2025-10-07 16:18:22 (2572): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct  6 05:21 start_atlas.sh
2025-10-07 16:18:22 (2572): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-07 16:18:22 (2572): VM Completion File Detected.
2025-10-07 16:18:22 (2572): Powering off VM.
2025-10-07 16:18:23 (2572): Successfully stopped VM.
2025-10-07 16:18:23 (2572): Deregistering VM. (boinc_dc2f39dc8847fa66, slot#1)
2025-10-07 16:18:23 (2572): Removing network bandwidth throttle group from VM.
2025-10-07 16:18:23 (2572): Removing VM from VirtualBox.
2025-10-07 16:18:28 (2572): called boinc_finish(0)

</stderr_txt>
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