Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:20:50 (1484319): wrapper (7.7.26015): starting
17:20:50 (1484319): wrapper: running run_atlas (--nthreads 12)
[2025-10-06 17:20:50] Arguments: --nthreads 12
[2025-10-06 17:20:50] Threads: 12
[2025-10-06 17:20:50] Checking for CVMFS
[2025-10-06 17:20:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-06 17:20:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-06 17:20:50] Running cvmfs_config stat atlas.cern.ch
[2025-10-06 17:20:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-06 17:20:50] 2.13.2.0 8705 24806 112588 151403 2 57 37317182 46080000 922 130560 0 32875656 99.996 788655 781 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-10-06 17:20:50] CVMFS is ok
[2025-10-06 17:20:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-06 17:20:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-06 17:20:50] Further information can be found at the LHC@home message board.
[2025-10-06 17:20:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-06 17:20:50] Checking for apptainer binary...
[2025-10-06 17:20:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-06 17:20:50] Running /usr/bin/apptainer --version
[2025-10-06 17:20:51] apptainer version 1.4.2-1.el9
[2025-10-06 17:20:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-06 17:20:51] gpu01.farm.particle.cz
[2025-10-06 17:20:51] apptainer works
[2025-10-06 17:20:51] Set ATHENA_PROC_NUMBER=12
[2025-10-06 17:20:51] Set ATHENA_CORE_NUMBER=12
[2025-10-06 17:20:51] Starting ATLAS job with PandaID=6831977844
[2025-10-06 17:20:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-06 17:55:12]  *** The last 200 lines of the pilot log: ***
[2025-10-06 17:55:12]  mtime=0
[2025-10-06 17:55:12]  protocol_id=None
[2025-10-06 17:55:12]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-06 17:55:12]  replicas=None
[2025-10-06 17:55:12]  scope=mc23_13p6TeV
[2025-10-06 17:55:12]  status=None
[2025-10-06 17:55:12]  status_code=0
[2025-10-06 17:55:12]  storage_token=
[2025-10-06 17:55:12]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6831977844/log.46376905._096663.job.log.tgz.1
[2025-10-06 17:55:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/12/81/log.46376905._096663.job.log.tgz.1
[2025-10-06 17:55:12]  workdir=None
[2025-10-06 17:55:12] ]
[2025-10-06 17:55:12] 2025-10-06 15:54:55,877 | INFO     | transferring file log.46376905._096663.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6831977844/log.46376905._096663.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-06 17:55:12] 2025-10-06 15:54:55,877 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6831977844/log.46376905._096663.job.log.tgz.1 /var/lib/boinc/slots/0/log.46376905._096663.job
[2025-10-06 17:55:12] 2025-10-06 15:54:55,892 | INFO     | adding to output.list: log.46376905._096663.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/12/81/log.46376905._096663.job.log.tg
[2025-10-06 17:55:12] 2025-10-06 15:54:55,892 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-06 17:55:12] 2025-10-06 15:54:55,892 | INFO     | summary of transferred files:
[2025-10-06 17:55:12] 2025-10-06 15:54:55,892 | INFO     |  -- lfn=log.46376905._096663.job.log.tgz.1, status_code=0, status=transferred
[2025-10-06 17:55:12] 2025-10-06 15:54:55,893 | INFO     | stage-out finished correctly
[2025-10-06 17:55:12] 2025-10-06 15:54:56,614 | WARNING  | process 1494876 can no longer be monitored (due to stat problems) - aborting
[2025-10-06 17:55:12] 2025-10-06 15:54:56,614 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6831977844/memory_monitor_summary.json (trf name=prmon)
[2025-10-06 17:55:12] 2025-10-06 15:54:56,683 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-06 17:55:12] 2025-10-06 15:54:56,734 | INFO     | job 6831977844 has state=finished
[2025-10-06 17:55:12] 2025-10-06 15:54:56,735 | INFO     | preparing for final server update for job 6831977844 in state='finished'
[2025-10-06 17:55:12] 2025-10-06 15:54:56,735 | INFO     | this job has now completed (state=finished)
[2025-10-06 17:55:12] 2025-10-06 15:54:56,735 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-06 17:55:12] 2025-10-06 15:54:56,736 | INFO     | log transfer has been attempted: DONE
[2025-10-06 17:55:12] 2025-10-06 15:54:56,736 | INFO     | job 6831977844 has finished - writing final server update
[2025-10-06 17:55:12] 2025-10-06 15:54:56,736 | INFO     | total number of processed events: 400 (read)
[2025-10-06 17:55:12] 2025-10-06 15:54:56,737 | INFO     | executing command: lscpu
[2025-10-06 17:55:12] 2025-10-06 15:54:56,763 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-06 17:55:12] 2025-10-06 15:54:56,767 | INFO     | number of running child processes to parent process 1494876: 1
[2025-10-06 17:55:12] 2025-10-06 15:54:56,768 | INFO     | maximum number of monitored processes: 6
[2025-10-06 17:55:12] 2025-10-06 15:54:57,323 | INFO     | time since job start (2038s) is within the limit (172800.0s)
[2025-10-06 17:55:12] 2025-10-06 15:54:59,270 | INFO     | monitor loop #158: job 0:6831977844 is in state 'finished'
[2025-10-06 17:55:12] 2025-10-06 15:54:59,271 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 17:55:12] 2025-10-06 15:54:59,328 | INFO     | time since job start (2040s) is within the limit (172800.0s)
[2025-10-06 17:55:12] 2025-10-06 15:54:59,397 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-06 17:55:12] 2025-10-06 15:54:59,401 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3214.9297187500006
[2025-10-06 17:55:12] 2025-10-06 15:54:59,404 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6831977844/memory_monitor_summary.json (trf name=prmon)
[2025-10-06 17:55:12] 2025-10-06 15:54:59,405 | INFO     | extracted standard info from prmon json
[2025-10-06 17:55:12] 2025-10-06 15:54:59,405 | INFO     | extracted standard memory fields from prmon json
[2025-10-06 17:55:12] 2025-10-06 15:54:59,405 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-06 17:55:12] 2025-10-06 15:54:59,405 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-06 17:55:12] 2025-10-06 15:54:59,405 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-06 17:55:12] 2025-10-06 15:54:59,406 | INFO     | fitting pss+swap vs Time
[2025-10-06 17:55:12] 2025-10-06 15:54:59,406 | INFO     | sum of square deviations: 5441962.5
[2025-10-06 17:55:12] 2025-10-06 15:54:59,406 | INFO     | sum of deviations: -931317469.5
[2025-10-06 17:55:12] 2025-10-06 15:54:59,406 | INFO     | mean x: 1759765147.5
[2025-10-06 17:55:12] 2025-10-06 15:54:59,406 | INFO     | mean y: 3025613.269230769
[2025-10-06 17:55:12] 2025-10-06 15:54:59,406 | INFO     | -- intersect: 301162767909.17706
[2025-10-06 17:55:12] 2025-10-06 15:54:59,406 | INFO     | intersect: 301162767909.17706
[2025-10-06 17:55:12] 2025-10-06 15:54:59,406 | INFO     | chi2: 0.007821203012326033
[2025-10-06 17:55:12] 2025-10-06 15:54:59,406 | INFO     | -- intersect: 301162767909.17706
[2025-10-06 17:55:12] 2025-10-06 15:54:59,406 | INFO     | current memory leak: -171.14 B/s (using 26 data points, chi2=0.01)
[2025-10-06 17:55:12] 2025-10-06 15:54:59,406 | INFO     | could have reported an average CPU frequency of 3223 MHz (5 samples)
[2025-10-06 17:55:12] 2025-10-06 15:54:59,406 | INFO     | ..............................
[2025-10-06 17:55:12] 2025-10-06 15:54:59,407 | INFO     | . Timing measurements:
[2025-10-06 17:55:12] 2025-10-06 15:54:59,407 | INFO     | . get job = 0 s
[2025-10-06 17:55:12] 2025-10-06 15:54:59,407 | INFO     | . initial setup = 2 s
[2025-10-06 17:55:12] 2025-10-06 15:54:59,407 | INFO     | . payload setup = 3 s
[2025-10-06 17:55:12] 2025-10-06 15:54:59,407 | INFO     | . stage-in = 0 s
[2025-10-06 17:55:12] 2025-10-06 15:54:59,407 | INFO     | . payload execution = 2015 s
[2025-10-06 17:55:12] 2025-10-06 15:54:59,407 | INFO     | . stage-out = 0 s
[2025-10-06 17:55:12] 2025-10-06 15:54:59,407 | INFO     | . log creation = 0 s
[2025-10-06 17:55:12] 2025-10-06 15:54:59,407 | INFO     | ..............................
[2025-10-06 17:55:12] 2025-10-06 15:54:59,460 | INFO     | 
[2025-10-06 17:55:12] 2025-10-06 15:54:59,460 | INFO     | job summary report
[2025-10-06 17:55:12] 2025-10-06 15:54:59,460 | INFO     | --------------------------------------------------
[2025-10-06 17:55:12] 2025-10-06 15:54:59,460 | INFO     | PanDA job id: 6831977844
[2025-10-06 17:55:12] 2025-10-06 15:54:59,460 | INFO     | task id: 46376905
[2025-10-06 17:55:12] 2025-10-06 15:54:59,460 | INFO     | errors: (none)
[2025-10-06 17:55:12] 2025-10-06 15:54:59,460 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-06 17:55:12] 2025-10-06 15:54:59,460 | INFO     | pilot state: finished 
[2025-10-06 17:55:12] 2025-10-06 15:54:59,461 | INFO     | transexitcode: 0
[2025-10-06 17:55:12] 2025-10-06 15:54:59,461 | INFO     | exeerrorcode: 0
[2025-10-06 17:55:12] 2025-10-06 15:54:59,461 | INFO     | exeerrordiag: 
[2025-10-06 17:55:12] 2025-10-06 15:54:59,461 | INFO     | exitcode: 0
[2025-10-06 17:55:12] 2025-10-06 15:54:59,461 | INFO     | exitmsg: OK
[2025-10-06 17:55:12] 2025-10-06 15:54:59,461 | INFO     | cpuconsumptiontime: 21224 s
[2025-10-06 17:55:12] 2025-10-06 15:54:59,461 | INFO     | nevents: 400
[2025-10-06 17:55:12] 2025-10-06 15:54:59,461 | INFO     | neventsw: 0
[2025-10-06 17:55:12] 2025-10-06 15:54:59,461 | INFO     | pid: 1494876
[2025-10-06 17:55:12] 2025-10-06 15:54:59,461 | INFO     | pgrp: 1494876
[2025-10-06 17:55:12] 2025-10-06 15:54:59,461 | INFO     | corecount: 12
[2025-10-06 17:55:12] 2025-10-06 15:54:59,461 | INFO     | event service: False
[2025-10-06 17:55:12] 2025-10-06 15:54:59,461 | INFO     | sizes: {0: 2348644, 1: 2348843, 3: 2349105, 11: 2349133, 2022: 2374222, 2023: 2383220, 2024: 2383404, 2026: 2383630}
[2025-10-06 17:55:12] 2025-10-06 15:54:59,461 | INFO     | --------------------------------------------------
[2025-10-06 17:55:12] 2025-10-06 15:54:59,461 | INFO     | 
[2025-10-06 17:55:12] 2025-10-06 15:54:59,462 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-06 17:55:12] 2025-10-06 15:54:59,476 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-06 17:55:12] 2025-10-06 15:54:59,476 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-06 17:55:12] 2025-10-06 15:54:59,476 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-06 17:55:12] 2025-10-06 15:54:59,476 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-06 17:55:12] 2025-10-06 15:54:59,476 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-06 17:55:12] 2025-10-06 15:54:59,477 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-06 17:55:12] 2025-10-06 15:54:59,477 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-06 17:55:12] 2025-10-06 15:54:59,477 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-06 17:55:12] 2025-10-06 15:54:59,477 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-06 17:55:12] 2025-10-06 15:54:59,477 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-06 17:55:12] 2025-10-06 15:54:59,477 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-06 17:55:12] 2025-10-06 15:54:59,477 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-06 17:55:12] 2025-10-06 15:54:59,477 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-06 17:55:12] 2025-10-06 15:54:59,477 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-06 17:55:12] 2025-10-06 15:54:59,477 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-06 17:55:12] 2025-10-06 15:54:59,477 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-06 17:55:12] 2025-10-06 15:54:59,477 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-06 17:55:12] 2025-10-06 15:54:59,477 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-06 17:55:12] 2025-10-06 15:54:59,477 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-06 17:55:12] 2025-10-06 15:54:59,478 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-06 17:55:12] 2025-10-06 15:54:59,478 | INFO     | job 6831977844 has completed (purged errors)
[2025-10-06 17:55:12] 2025-10-06 15:54:59,478 | INFO     | overall cleanup function is called
[2025-10-06 17:55:12] 2025-10-06 15:55:00,486 | INFO     | --- collectZombieJob: --- 10, [1494876]
[2025-10-06 17:55:12] 2025-10-06 15:55:00,486 | INFO     | zombie collector waiting for pid 1494876
[2025-10-06 17:55:12] 2025-10-06 15:55:00,487 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-06 17:55:12] 2025-10-06 15:55:00,487 | INFO     | collected zombie processes
[2025-10-06 17:55:12] 2025-10-06 15:55:00,487 | INFO     | will attempt to kill all subprocesses of pid=1494876
[2025-10-06 17:55:12] 2025-10-06 15:55:00,579 | INFO     | process IDs to be killed: [1494876] (in reverse order)
[2025-10-06 17:55:12] 2025-10-06 15:55:00,618 | WARNING  | found no corresponding commands to process id(s)
[2025-10-06 17:55:12] 2025-10-06 15:55:00,618 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-06 17:55:12] 2025-10-06 15:55:00,622 | INFO     | did not find any defunct processes belonging to 1494876
[2025-10-06 17:55:12] 2025-10-06 15:55:00,624 | INFO     | did not find any defunct processes belonging to 1494876
[2025-10-06 17:55:12] 2025-10-06 15:55:00,624 | INFO     | ready for new job
[2025-10-06 17:55:12] 2025-10-06 15:55:00,625 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-06 17:55:12] 2025-10-06 15:55:00,625 | INFO     | ***************************************
[2025-10-06 17:55:12] 2025-10-06 15:55:00,625 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-06 17:55:12] 2025-10-06 15:55:00,625 | INFO     | ***************************************
[2025-10-06 17:55:12] 2025-10-06 15:55:00,626 | INFO     | 
[2025-10-06 17:55:12] 2025-10-06 15:55:00,627 | INFO     | architecture information:
[2025-10-06 17:55:12] 2025-10-06 15:55:00,627 | INFO     | executing command: cat /etc/os-release
[2025-10-06 17:55:12] 2025-10-06 15:55:00,639 | INFO     | cat /etc/os-release:
[2025-10-06 17:55:12] NAME="CentOS Linux"
[2025-10-06 17:55:12] VERSION="7 (Core)"
[2025-10-06 17:55:12] ID="centos"
[2025-10-06 17:55:12] ID_LIKE="rhel fedora"
[2025-10-06 17:55:12] VERSION_ID="7"
[2025-10-06 17:55:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-06 17:55:12] ANSI_COLOR="0;31"
[2025-10-06 17:55:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-06 17:55:12] HOME_URL="https://www.centos.org/"
[2025-10-06 17:55:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-06 17:55:12] 
[2025-10-06 17:55:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-06 17:55:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-06 17:55:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-06 17:55:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-06 17:55:12] 
[2025-10-06 17:55:12] 2025-10-06 15:55:00,640 | INFO     | ***************************************
[2025-10-06 17:55:12] 2025-10-06 15:55:01,143 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-06 17:55:12] 2025-10-06 15:55:01,155 | INFO     | sufficient remaining disk space (51870957568 B)
[2025-10-06 17:55:12] 2025-10-06 15:55:01,155 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-06 17:55:12] 2025-10-06 15:55:01,155 | INFO     | current server update state: UPDATING_FINAL
[2025-10-06 17:55:12] 2025-10-06 15:55:01,155 | INFO     | update_server=False
[2025-10-06 17:55:12] 2025-10-06 15:55:01,155 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-06 17:55:12] 2025-10-06 15:55:01,156 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-06 17:55:12] 2025-10-06 15:55:01,156 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-06 17:55:12] 2025-10-06 15:55:01,156 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-06 17:55:12] 2025-10-06 15:55:01,156 | INFO     | aborting loop
[2025-10-06 17:55:12] 2025-10-06 15:55:01,157 | INFO     | found 0 job(s) in 20 queues
[2025-10-06 17:55:12] 2025-10-06 15:55:01,157 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-06 17:55:12] 2025-10-06 15:55:01,157 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-06 17:55:12] 2025-10-06 15:55:01,450 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-06 17:55:12] 2025-10-06 15:55:01,829 | INFO     | [monitor] cgroup control has ended
[2025-10-06 17:55:12] 2025-10-06 15:55:02,161 | INFO     | [job] retrieve thread has finished
[2025-10-06 17:55:12] 2025-10-06 15:55:02,162 | INFO     | [job] queue monitor thread has finished
[2025-10-06 17:55:12] 2025-10-06 15:55:02,162 | INFO     | [job] job monitor thread has finished
[2025-10-06 17:55:12] 2025-10-06 15:55:02,211 | INFO     | all data control threads have been joined
[2025-10-06 17:55:12] 2025-10-06 15:55:02,230 | INFO     | all job control threads have been joined
[2025-10-06 17:55:12] 2025-10-06 15:55:02,277 | INFO     | all payload control threads have been joined
[2025-10-06 17:55:12] 2025-10-06 15:55:02,346 | INFO     | [payload] execute_payloads thread has finished
[2025-10-06 17:55:12] 2025-10-06 15:55:02,508 | INFO     | [job] validate thread has finished
[2025-10-06 17:55:12] 2025-10-06 15:55:02,587 | INFO     | [job] create_data_payload thread has finished
[2025-10-06 17:55:12] 2025-10-06 15:55:02,604 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-06 17:55:12] 2025-10-06 15:55:02,697 | INFO     | [data] copytool_in thread has finished
[2025-10-06 17:55:12] 2025-10-06 15:55:02,740 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-06 17:55:12] 2025-10-06 15:55:02,749 | INFO     | [payload] validate_pre thread has finished
[2025-10-06 17:55:12] 2025-10-06 15:55:02,828 | INFO     | [payload] validate_post thread has finished
[2025-10-06 17:55:12] 2025-10-06 15:55:03,216 | INFO     | [data] control thread has finished
[2025-10-06 17:55:12] 2025-10-06 15:55:03,235 | INFO     | [job] control thread has finished
[2025-10-06 17:55:12] 2025-10-06 15:55:03,282 | INFO     | [payload] control thread has finished
[2025-10-06 17:55:12] 2025-10-06 15:55:03,456 | INFO     | [data] copytool_out thread has finished
[2025-10-06 17:55:12] 2025-10-06 15:55:03,738 | INFO     | [payload] failed_post thread has finished
[2025-10-06 17:55:12] 2025-10-06 15:55:06,746 | INFO     | [data] queue_monitor thread has finished
[2025-10-06 17:55:12] 2025-10-06 15:55:07,537 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140646388307776)>', '<ExcThread(monitor, started 140646035724032)>']
[2025-10-06 17:55:12] 2025-10-06 15:55:08,193 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-06 17:55:12] 2025-10-06 15:55:08,193 | INFO     | [monitor] control thread has ended
[2025-10-06 17:55:12] 2025-10-06 15:55:12,563 | INFO     | all workflow threads have been joined
[2025-10-06 17:55:12] 2025-10-06 15:55:12,563 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-06 17:55:12] 2025-10-06 15:55:12,563 | INFO     | traces error code: 0
[2025-10-06 17:55:12] 2025-10-06 15:55:12,563 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-06 17:55:12] 2025-10-06 15:55:12,626 [wrapper] ==== pilot stdout END ====
[2025-10-06 17:55:12] 2025-10-06 15:55:12,629 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-06 17:55:12] 2025-10-06 15:55:12,631 [wrapper] pilotpid: 1488183
[2025-10-06 17:55:12] 2025-10-06 15:55:12,633 [wrapper] Pilot exit status: 0
[2025-10-06 17:55:12] 2025-10-06 15:55:12,640 [wrapper] pandaids: 6831977844
[2025-10-06 17:55:12] 2025-10-06 15:55:12,666 [wrapper] cleanup supervisor_pilot 1536413 1488184
[2025-10-06 17:55:12] 2025-10-06 15:55:12,668 [wrapper] Test setup, not cleaning
[2025-10-06 17:55:12] 2025-10-06 15:55:12,670 [wrapper] apfmon messages muted
[2025-10-06 17:55:12] 2025-10-06 15:55:12,672 [wrapper] ==== wrapper stdout END ====
[2025-10-06 17:55:12] 2025-10-06 15:55:12,673 [wrapper] ==== wrapper stderr END ====
[2025-10-06 17:55:12]  *** Error codes and diagnostics ***
[2025-10-06 17:55:12]     "exeErrorCode": 0,
[2025-10-06 17:55:12]     "exeErrorDiag": "",
[2025-10-06 17:55:12]     "pilotErrorCode": 0,
[2025-10-06 17:55:12]     "pilotErrorDiag": "",
[2025-10-06 17:55:12]  *** Listing of results directory ***
[2025-10-06 17:55:12] total 386500
[2025-10-06 17:55:12] -rw-r--r-- 1 boinc boinc    552446 Oct  5 22:57 pilot3.tar.gz
[2025-10-06 17:55:12] -rw-r--r-- 1 boinc boinc      5112 Oct  5 23:24 queuedata.json
[2025-10-06 17:55:12] -rwx------ 1 boinc boinc     36292 Oct  5 23:24 runpilot2-wrapper.sh
[2025-10-06 17:55:12] -rw-r--r-- 1 boinc boinc       100 Oct  6 17:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-06 17:55:12] -rwxr-xr-x 1 boinc boinc      7986 Oct  6 17:20 run_atlas
[2025-10-06 17:55:12] -rw-r--r-- 1 boinc boinc       105 Oct  6 17:20 job.xml
[2025-10-06 17:55:12] -rw-r--r-- 1 boinc boinc      9445 Oct  6 17:20 init_data.xml
[2025-10-06 17:55:12] -rw-r--r-- 2 boinc boinc 216170919 Oct  6 17:20 EVNT.46376901._003567.pool.root.1
[2025-10-06 17:55:12] -rw-r--r-- 2 boinc boinc     15120 Oct  6 17:20 start_atlas.sh
[2025-10-06 17:55:12] drwxrwx--x 2 boinc boinc      4096 Oct  6 17:20 shared
[2025-10-06 17:55:12] -rw-r--r-- 2 boinc boinc    565600 Oct  6 17:20 input.tar.gz
[2025-10-06 17:55:12] -rw-r--r-- 1 boinc boinc         0 Oct  6 17:20 boinc_lockfile
[2025-10-06 17:55:12] -rw-r--r-- 1 boinc boinc      2518 Oct  6 17:20 pandaJob.out
[2025-10-06 17:55:12] -rw------- 1 boinc boinc    975002 Oct  6 17:20 agis_schedconf.cvmfs.json
[2025-10-06 17:55:12] -rw------- 1 boinc boinc   1560401 Oct  6 17:20 agis_ddmendpoints.agis.ALL.json
[2025-10-06 17:55:12] drwx------ 4 boinc boinc      4096 Oct  6 17:20 pilot3
[2025-10-06 17:55:12] -rw------- 1 boinc boinc        95 Oct  6 17:54 pilot_heartbeat.json
[2025-10-06 17:55:12] -rw-r--r-- 1 boinc boinc       529 Oct  6 17:54 boinc_task_state.xml
[2025-10-06 17:55:12] -rw------- 1 boinc boinc 174332506 Oct  6 17:54 HITS.46376905._096663.pool.root.1
[2025-10-06 17:55:12] -rw------- 1 boinc boinc      1017 Oct  6 17:54 memory_monitor_summary.json
[2025-10-06 17:55:12] -rw------- 1 boinc boinc    357083 Oct  6 17:54 log.46376905._096663.job.log.tgz.1
[2025-10-06 17:55:12] -rw------- 1 boinc boinc      7774 Oct  6 17:54 heartbeat.json
[2025-10-06 17:55:12] -rw-r--r-- 1 boinc boinc      8192 Oct  6 17:55 boinc_mmap_file
[2025-10-06 17:55:12] -rw-r--r-- 1 boinc boinc        27 Oct  6 17:55 wrapper_checkpoint.txt
[2025-10-06 17:55:12] -rw------- 1 boinc boinc      4552 Oct  6 17:55 pilotlog.txt
[2025-10-06 17:55:12] -rw------- 1 boinc boinc    333727 Oct  6 17:55 log.46376905._096663.job.log.1
[2025-10-06 17:55:12] -rw------- 1 boinc boinc       357 Oct  6 17:55 output.list
[2025-10-06 17:55:12] -rw-r--r-- 1 boinc boinc       620 Oct  6 17:55 runtime_log
[2025-10-06 17:55:12] -rw------- 1 boinc boinc    706560 Oct  6 17:55 result.tar.gz
[2025-10-06 17:55:12] -rw-r--r-- 1 boinc boinc      8740 Oct  6 17:55 runtime_log.err
[2025-10-06 17:55:12] -rw------- 1 boinc boinc       658 Oct  6 17:55 D1qLDmgOlP8n9Rq4apOajLDm4fhM0noT9bVof3QYDmcZHMDmFAuW2m.diag
[2025-10-06 17:55:12] -rw-r--r-- 1 boinc boinc     21679 Oct  6 17:55 stderr.txt
[2025-10-06 17:55:12] HITS file was successfully produced:
[2025-10-06 17:55:12] -rw------- 1 boinc boinc 174332506 Oct  6 17:54 shared/HITS.pool.root.1
[2025-10-06 17:55:12]  *** Contents of shared directory: ***
[2025-10-06 17:55:12] total 382624
[2025-10-06 17:55:12] -rw-r--r-- 2 boinc boinc 216170919 Oct  6 17:20 ATLAS.root_0
[2025-10-06 17:55:12] -rw-r--r-- 2 boinc boinc     15120 Oct  6 17:20 start_atlas.sh
[2025-10-06 17:55:12] -rw-r--r-- 2 boinc boinc    565600 Oct  6 17:20 input.tar.gz
[2025-10-06 17:55:12] -rw------- 1 boinc boinc 174332506 Oct  6 17:54 HITS.pool.root.1
[2025-10-06 17:55:12] -rw------- 1 boinc boinc    706560 Oct  6 17:55 result.tar.gz
17:55:14 (1484319): run_atlas exited; CPU time 21234.374661
17:55:14 (1484319): called boinc_finish(0)

</stderr_txt>
]]>

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