Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:46:19 (17989): wrapper (7.7.26015): starting
01:46:19 (17989): wrapper: running run_atlas (--nthreads 8)
[2025-10-07 01:46:19] Arguments: --nthreads 8
[2025-10-07 01:46:19] Threads: 8
[2025-10-07 01:46:19] Checking for CVMFS
[2025-10-07 01:46:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-07 01:46:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-07 01:46:20] Running cvmfs_config stat atlas.cern.ch
[2025-10-07 01:46:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-07 01:46:20] 2.11.2.0 16537 212446 137928 151416 3 61 22921908 25165825 4632 130560 0 104954525 99.882 63512414 3138 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-07 01:46:20] CVMFS is ok
[2025-10-07 01:46:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-07 01:46:20] Checking for apptainer binary...
[2025-10-07 01:46:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-07 01:46:20] Running /usr/bin/apptainer --version
[2025-10-07 01:46:21] apptainer version 1.3.2-1.el7
[2025-10-07 01:46:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-07 01:46:56] cg-vwn365.simple-grid.lan
[2025-10-07 01:46:56] apptainer works
[2025-10-07 01:46:56] Set ATHENA_PROC_NUMBER=8
[2025-10-07 01:46:56] Set ATHENA_CORE_NUMBER=8
[2025-10-07 01:46:56] Starting ATLAS job with PandaID=6832084736
[2025-10-07 01:46:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-07 05:43:38]  *** The last 200 lines of the pilot log: ***
[2025-10-07 05:43:38] 2025-10-07 03:42:33,882 | INFO     | sum of deviations: 100430591174.0
[2025-10-07 05:43:38] 2025-10-07 03:42:33,882 | INFO     | mean x: 1759801726.0
[2025-10-07 05:43:38] 2025-10-07 03:42:33,882 | INFO     | mean y: 2403788.2081447965
[2025-10-07 05:43:38] 2025-10-07 03:42:33,882 | INFO     | -- intersect: -52803612521.66995
[2025-10-07 05:43:38] 2025-10-07 03:42:33,882 | INFO     | intersect: -52803612521.66995
[2025-10-07 05:43:38] 2025-10-07 03:42:33,883 | INFO     | chi2: 7.146462262017458
[2025-10-07 05:43:38] 2025-10-07 03:42:33,883 | INFO     | sum of square deviations: 3124858590.0
[2025-10-07 05:43:38] 2025-10-07 03:42:33,885 | INFO     | sum of deviations: 112382407306.00002
[2025-10-07 05:43:38] 2025-10-07 03:42:33,885 | INFO     | mean x: 1759801573.5
[2025-10-07 05:43:38] 2025-10-07 03:42:33,886 | INFO     | mean y: 2411812.2407407407
[2025-10-07 05:43:38] 2025-10-07 03:42:33,886 | INFO     | -- intersect: -63287088021.03547
[2025-10-07 05:43:38] 2025-10-07 03:42:33,886 | INFO     | intersect: -63287088021.03547
[2025-10-07 05:43:38] 2025-10-07 03:42:33,886 | INFO     | chi2: 6.437829200600513
[2025-10-07 05:43:38] 2025-10-07 03:42:33,886 | INFO     | current chi2=6.437829200600513 (change=9.915858160802724 %)
[2025-10-07 05:43:38] 2025-10-07 03:42:33,886 | INFO     | right removable region: 215
[2025-10-07 05:43:38] 2025-10-07 03:42:33,887 | INFO     | sum of square deviations: 3124858590.0
[2025-10-07 05:43:38] 2025-10-07 03:42:33,888 | INFO     | sum of deviations: 25924026287.500008
[2025-10-07 05:43:38] 2025-10-07 03:42:33,889 | INFO     | mean x: 1759801878.5
[2025-10-07 05:43:38] 2025-10-07 03:42:33,889 | INFO     | mean y: 2454909.1342592593
[2025-10-07 05:43:38] 2025-10-07 03:42:33,889 | INFO     | -- intersect: -14596973783.42168
[2025-10-07 05:43:38] 2025-10-07 03:42:33,889 | INFO     | intersect: -14596973783.42168
[2025-10-07 05:43:38] 2025-10-07 03:42:33,889 | INFO     | chi2: 2.4097534228735493
[2025-10-07 05:43:38] 2025-10-07 03:42:33,889 | INFO     | current chi2=2.4097534228735493 (change=66.28047088863697 %)
[2025-10-07 05:43:38] 2025-10-07 03:42:33,890 | INFO     | sum of square deviations: 2912836010.0
[2025-10-07 05:43:38] 2025-10-07 03:42:33,892 | INFO     | sum of deviations: -15212173961.000002
[2025-10-07 05:43:38] 2025-10-07 03:42:33,892 | INFO     | mean x: 1759802031.0
[2025-10-07 05:43:38] 2025-10-07 03:42:33,892 | INFO     | mean y: 2484350.3412322276
[2025-10-07 05:43:38] 2025-10-07 03:42:33,892 | INFO     | -- intersect: 9192982730.81584
[2025-10-07 05:43:38] 2025-10-07 03:42:33,892 | INFO     | intersect: 9192982730.81584
[2025-10-07 05:43:38] 2025-10-07 03:42:33,893 | INFO     | chi2: 0.8810461963422788
[2025-10-07 05:43:38] 2025-10-07 03:42:33,893 | INFO     | current chi2=0.8810461963422788 (change=63.43832576481368 %)
[2025-10-07 05:43:38] 2025-10-07 03:42:33,893 | INFO     | sum of square deviations: 2710627567.5
[2025-10-07 05:43:38] 2025-10-07 03:42:33,895 | INFO     | sum of deviations: -15615601273.5
[2025-10-07 05:43:38] 2025-10-07 03:42:33,895 | INFO     | mean x: 1759802183.5
[2025-10-07 05:43:38] 2025-10-07 03:42:33,895 | INFO     | mean y: 2484592.975728155
[2025-10-07 05:43:38] 2025-10-07 03:42:33,895 | INFO     | -- intersect: 10140494531.06387
[2025-10-07 05:43:38] 2025-10-07 03:42:33,895 | INFO     | intersect: 10140494531.06387
[2025-10-07 05:43:38] 2025-10-07 03:42:33,895 | INFO     | chi2: 0.8503205570432127
[2025-10-07 05:43:38] 2025-10-07 03:42:33,896 | INFO     | current chi2=0.8503205570432127 (change=3.4874038871770328 %)
[2025-10-07 05:43:38] 2025-10-07 03:42:33,896 | INFO     | left removable region: 30
[2025-10-07 05:43:38] 2025-10-07 03:42:33,896 | INFO     | sum of square deviations: 1963274020.0
[2025-10-07 05:43:38] 2025-10-07 03:42:33,897 | INFO     | sum of deviations: 4753914952.000001
[2025-10-07 05:43:38] 2025-10-07 03:42:33,898 | INFO     | mean x: 1759802458.0
[2025-10-07 05:43:38] 2025-10-07 03:42:33,898 | INFO     | mean y: 2489676.3243243243
[2025-10-07 05:43:38] 2025-10-07 03:42:33,898 | INFO     | -- intersect: -4258734754.1056952
[2025-10-07 05:43:38] 2025-10-07 03:42:33,898 | INFO     | intersect: -4258734754.1056952
[2025-10-07 05:43:38] 2025-10-07 03:42:33,898 | INFO     | chi2: 0.0004695781415970727
[2025-10-07 05:43:38] 2025-10-07 03:42:33,898 | INFO     | -- intersect: -4258734754.1056952
[2025-10-07 05:43:38] 2025-10-07 03:42:33,899 | INFO     | current memory leak: 2.42 B/s (using 185 data points, chi2=0.00)
[2025-10-07 05:43:38] 2025-10-07 03:42:33,899 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-10-07 05:43:38] 2025-10-07 03:42:33,900 | INFO     | ..............................
[2025-10-07 05:43:38] 2025-10-07 03:42:33,900 | INFO     | . Timing measurements:
[2025-10-07 05:43:38] 2025-10-07 03:42:33,900 | INFO     | . get job = 0 s
[2025-10-07 05:43:38] 2025-10-07 03:42:33,900 | INFO     | . initial setup = 8 s
[2025-10-07 05:43:38] 2025-10-07 03:42:33,900 | INFO     | . payload setup = 122 s
[2025-10-07 05:43:38] 2025-10-07 03:42:33,900 | INFO     | . stage-in = 0 s
[2025-10-07 05:43:38] 2025-10-07 03:42:33,900 | INFO     | . payload execution = 13585 s
[2025-10-07 05:43:38] 2025-10-07 03:42:33,900 | INFO     | . stage-out = 3 s
[2025-10-07 05:43:38] 2025-10-07 03:42:33,900 | INFO     | . log creation = 1 s
[2025-10-07 05:43:38] 2025-10-07 03:42:33,900 | INFO     | ..............................
[2025-10-07 05:43:38] 2025-10-07 03:42:33,924 | INFO     | time since job start (13948s) is within the limit (172800.0s)
[2025-10-07 05:43:38] 2025-10-07 03:42:34,484 | INFO     | 
[2025-10-07 05:43:38] 2025-10-07 03:42:34,484 | INFO     | job summary report
[2025-10-07 05:43:38] 2025-10-07 03:42:34,484 | INFO     | --------------------------------------------------
[2025-10-07 05:43:38] 2025-10-07 03:42:34,485 | INFO     | PanDA job id: 6832084736
[2025-10-07 05:43:38] 2025-10-07 03:42:34,485 | INFO     | task id: 46376905
[2025-10-07 05:43:38] 2025-10-07 03:42:34,485 | INFO     | errors: (none)
[2025-10-07 05:43:38] 2025-10-07 03:42:34,485 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-07 05:43:38] 2025-10-07 03:42:34,485 | INFO     | pilot state: finished 
[2025-10-07 05:43:38] 2025-10-07 03:42:34,485 | INFO     | transexitcode: 0
[2025-10-07 05:43:38] 2025-10-07 03:42:34,485 | INFO     | exeerrorcode: 0
[2025-10-07 05:43:38] 2025-10-07 03:42:34,485 | INFO     | exeerrordiag: 
[2025-10-07 05:43:38] 2025-10-07 03:42:34,485 | INFO     | exitcode: 0
[2025-10-07 05:43:38] 2025-10-07 03:42:34,485 | INFO     | exitmsg: OK
[2025-10-07 05:43:38] 2025-10-07 03:42:34,485 | INFO     | cpuconsumptiontime: 47551 s
[2025-10-07 05:43:38] 2025-10-07 03:42:34,485 | INFO     | nevents: 400
[2025-10-07 05:43:38] 2025-10-07 03:42:34,486 | INFO     | neventsw: 0
[2025-10-07 05:43:38] 2025-10-07 03:42:34,486 | INFO     | pid: 28311
[2025-10-07 05:43:38] 2025-10-07 03:42:34,486 | INFO     | pgrp: 28311
[2025-10-07 05:43:38] 2025-10-07 03:42:34,486 | INFO     | corecount: 8
[2025-10-07 05:43:38] 2025-10-07 03:42:34,486 | INFO     | event service: False
[2025-10-07 05:43:38] 2025-10-07 03:42:34,486 | INFO     | sizes: {0: 2348590, 1: 2348845, 2: 2348873, 13: 2348873, 23: 2348929, 34: 2348957, 45: 2349113, 56: 2349141, 66: 2349169, 77: 2349197, 78: 2349515, 88: 2349851, 13
[2025-10-07 05:43:38] 2025-10-07 03:42:34,486 | INFO     | --------------------------------------------------
[2025-10-07 05:43:38] 2025-10-07 03:42:34,486 | INFO     | 
[2025-10-07 05:43:38] 2025-10-07 03:42:34,486 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-10-07 05:43:38] 2025-10-07 03:42:34,768 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-07 05:43:38] 2025-10-07 03:42:34,768 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-07 05:43:38] 2025-10-07 03:42:34,768 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-07 05:43:38] 2025-10-07 03:42:34,768 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-07 05:43:38] 2025-10-07 03:42:34,768 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-07 05:43:38] 2025-10-07 03:42:34,768 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-07 05:43:38] 2025-10-07 03:42:34,769 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-07 05:43:38] 2025-10-07 03:42:34,769 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-07 05:43:38] 2025-10-07 03:42:34,769 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-07 05:43:38] 2025-10-07 03:42:34,769 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-07 05:43:38] 2025-10-07 03:42:34,769 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-07 05:43:38] 2025-10-07 03:42:34,769 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-07 05:43:38] 2025-10-07 03:42:34,769 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-07 05:43:38] 2025-10-07 03:42:34,769 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-07 05:43:38] 2025-10-07 03:42:34,769 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-07 05:43:38] 2025-10-07 03:42:34,769 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-07 05:43:38] 2025-10-07 03:42:34,770 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-07 05:43:38] 2025-10-07 03:42:34,770 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-07 05:43:38] 2025-10-07 03:42:34,770 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-07 05:43:38] 2025-10-07 03:42:34,770 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-07 05:43:38] 2025-10-07 03:42:34,770 | INFO     | job 6832084736 has completed (purged errors)
[2025-10-07 05:43:38] 2025-10-07 03:42:34,770 | INFO     | overall cleanup function is called
[2025-10-07 05:43:38] 2025-10-07 03:42:35,779 | INFO     | --- collectZombieJob: --- 10, [28311]
[2025-10-07 05:43:38] 2025-10-07 03:42:35,779 | INFO     | zombie collector waiting for pid 28311
[2025-10-07 05:43:38] 2025-10-07 03:42:35,780 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-07 05:43:38] 2025-10-07 03:42:35,780 | INFO     | collected zombie processes
[2025-10-07 05:43:38] 2025-10-07 03:42:35,780 | INFO     | will attempt to kill all subprocesses of pid=28311
[2025-10-07 05:43:38] 2025-10-07 03:42:35,886 | INFO     | process IDs to be killed: [28311] (in reverse order)
[2025-10-07 05:43:38] 2025-10-07 03:42:36,135 | WARNING  | found no corresponding commands to process id(s)
[2025-10-07 05:43:38] 2025-10-07 03:42:36,135 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-07 05:43:38] 2025-10-07 03:42:36,138 | INFO     | did not find any defunct processes belonging to 28311
[2025-10-07 05:43:38] 2025-10-07 03:42:36,141 | INFO     | did not find any defunct processes belonging to 28311
[2025-10-07 05:43:38] 2025-10-07 03:42:36,141 | INFO     | ready for new job
[2025-10-07 05:43:38] 2025-10-07 03:42:36,142 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-07 05:43:38] 2025-10-07 03:42:36,144 | INFO     | ***************************************
[2025-10-07 05:43:38] 2025-10-07 03:42:36,144 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-07 05:43:38] 2025-10-07 03:42:36,144 | INFO     | ***************************************
[2025-10-07 05:43:38] 2025-10-07 03:42:36,144 | INFO     | 
[2025-10-07 05:43:38] 2025-10-07 03:42:36,145 | INFO     | pilot is running in a VM
[2025-10-07 05:43:38] 2025-10-07 03:42:36,145 | INFO     | architecture information:
[2025-10-07 05:43:38] 2025-10-07 03:42:36,150 | INFO     | executing command: cat /etc/os-release
[2025-10-07 05:43:38] 2025-10-07 03:42:36,215 | INFO     | cat /etc/os-release:
[2025-10-07 05:43:38] NAME="CentOS Linux"
[2025-10-07 05:43:38] VERSION="7 (Core)"
[2025-10-07 05:43:38] ID="centos"
[2025-10-07 05:43:38] ID_LIKE="rhel fedora"
[2025-10-07 05:43:38] VERSION_ID="7"
[2025-10-07 05:43:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-07 05:43:38] ANSI_COLOR="0;31"
[2025-10-07 05:43:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-07 05:43:38] HOME_URL="https://www.centos.org/"
[2025-10-07 05:43:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-07 05:43:38] 
[2025-10-07 05:43:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-07 05:43:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-07 05:43:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-07 05:43:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-07 05:43:38] 
[2025-10-07 05:43:38] 2025-10-07 03:42:36,215 | INFO     | ***************************************
[2025-10-07 05:43:38] 2025-10-07 03:42:36,718 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-10-07 05:43:38] 2025-10-07 03:42:36,914 | INFO     | sufficient remaining disk space (495289630720 B)
[2025-10-07 05:43:38] 2025-10-07 03:42:36,914 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-07 05:43:38] 2025-10-07 03:42:36,914 | INFO     | current server update state: UPDATING_FINAL
[2025-10-07 05:43:38] 2025-10-07 03:42:36,914 | INFO     | update_server=False
[2025-10-07 05:43:38] 2025-10-07 03:42:36,915 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-07 05:43:38] 2025-10-07 03:42:36,961 | INFO     | all payload control threads have been joined
[2025-10-07 05:43:38] 2025-10-07 03:42:37,157 | INFO     | all data control threads have been joined
[2025-10-07 05:43:38] 2025-10-07 03:42:37,175 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-07 05:43:38] 2025-10-07 03:42:37,176 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-07 05:43:38] 2025-10-07 03:42:37,176 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-07 05:43:38] 2025-10-07 03:42:37,176 | INFO     | will abort loop
[2025-10-07 05:43:38] 2025-10-07 03:42:37,194 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-07 05:43:38] 2025-10-07 03:42:37,363 | INFO     | all job control threads have been joined
[2025-10-07 05:43:38] 2025-10-07 03:42:37,920 | INFO     | [job] retrieve thread has finished
[2025-10-07 05:43:38] 2025-10-07 03:42:37,967 | INFO     | [payload] control thread has finished
[2025-10-07 05:43:38] 2025-10-07 03:42:38,087 | INFO     | [payload] validate_pre thread has finished
[2025-10-07 05:43:38] 2025-10-07 03:42:38,120 | INFO     | [data] copytool_in thread has finished
[2025-10-07 05:43:38] 2025-10-07 03:42:38,162 | INFO     | [data] control thread has finished
[2025-10-07 05:43:38] 2025-10-07 03:42:38,181 | INFO     | [job] job monitor thread has finished
[2025-10-07 05:43:38] 2025-10-07 03:42:38,283 | INFO     | [payload] validate_post thread has finished
[2025-10-07 05:43:38] 2025-10-07 03:42:38,369 | INFO     | [job] control thread has finished
[2025-10-07 05:43:38] 2025-10-07 03:42:38,687 | INFO     | [payload] execute_payloads thread has finished
[2025-10-07 05:43:38] 2025-10-07 03:42:38,801 | INFO     | [job] create_data_payload thread has finished
[2025-10-07 05:43:38] 2025-10-07 03:42:38,908 | INFO     | [payload] failed_post thread has finished
[2025-10-07 05:43:38] 2025-10-07 03:42:39,053 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-07 05:43:38] 2025-10-07 03:42:39,070 | INFO     | [job] validate thread has finished
[2025-10-07 05:43:38] 2025-10-07 03:42:39,199 | INFO     | [data] copytool_out thread has finished
[2025-10-07 05:43:38] 2025-10-07 03:42:39,270 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-07 05:43:38] 2025-10-07 03:42:40,059 | INFO     | [job] queue monitor thread has finished
[2025-10-07 05:43:38] 2025-10-07 03:42:43,277 | INFO     | [data] queue_monitor thread has finished
[2025-10-07 05:43:38] 2025-10-07 03:42:47,330 | INFO     | job.realtimelogging is not enabled
[2025-10-07 05:43:38] 2025-10-07 03:42:48,335 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-07 05:43:38] 2025-10-07 03:43:07,123 | INFO     | PID=21778 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-07 05:43:38] 2025-10-07 03:43:07,123 | INFO     | .. there are 9 such processes running
[2025-10-07 05:43:38] 2025-10-07 03:43:07,123 | INFO     | found 0 job(s) in 20 queues
[2025-10-07 05:43:38] 2025-10-07 03:43:07,123 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-07 05:43:38] 2025-10-07 03:43:07,123 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-07 05:43:38] 2025-10-07 03:43:28,977 | INFO     | [monitor] cgroup control has ended
[2025-10-07 05:43:38] 2025-10-07 03:43:30,024 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139976412718912)>', '<ExcThread(monitor, started 139975962109696)>']
[2025-10-07 05:43:38] 2025-10-07 03:43:30,264 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-07 05:43:38] 2025-10-07 03:43:30,264 | INFO     | [monitor] control thread has ended
[2025-10-07 05:43:38] 2025-10-07 03:43:35,049 | INFO     | all workflow threads have been joined
[2025-10-07 05:43:38] 2025-10-07 03:43:35,049 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-07 05:43:38] 2025-10-07 03:43:35,050 | INFO     | traces error code: 0
[2025-10-07 05:43:38] 2025-10-07 03:43:35,050 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-07 05:43:38] 2025-10-07 03:43:35,469 [wrapper] ==== pilot stdout END ====
[2025-10-07 05:43:38] 2025-10-07 03:43:35,566 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-07 05:43:38] 2025-10-07 03:43:35,691 [wrapper] pilotpid: 21778
[2025-10-07 05:43:38] 2025-10-07 03:43:35,814 [wrapper] Pilot exit status: 0
[2025-10-07 05:43:38] 2025-10-07 03:43:36,167 [wrapper] pandaids: 6832084736
[2025-10-07 05:43:38] 2025-10-07 03:43:36,815 [wrapper] cleanup supervisor_pilot 19936 21779
[2025-10-07 05:43:38] 2025-10-07 03:43:36,850 [wrapper] Test setup, not cleaning
[2025-10-07 05:43:38] 2025-10-07 03:43:36,944 [wrapper] apfmon messages muted
[2025-10-07 05:43:38] 2025-10-07 03:43:37,035 [wrapper] ==== wrapper stdout END ====
[2025-10-07 05:43:38] 2025-10-07 03:43:37,095 [wrapper] ==== wrapper stderr END ====
[2025-10-07 05:43:38]  *** Error codes and diagnostics ***
[2025-10-07 05:43:38]     "exeErrorCode": 0,
[2025-10-07 05:43:38]     "exeErrorDiag": "",
[2025-10-07 05:43:38]     "pilotErrorCode": 0,
[2025-10-07 05:43:38]     "pilotErrorDiag": "",
[2025-10-07 05:43:38]  *** Listing of results directory ***
[2025-10-07 05:43:38] total 389176
[2025-10-07 05:43:38] -rw-r--r--. 1 boinc boinc    552446 Oct  6 01:27 pilot3.tar.gz
[2025-10-07 05:43:38] -rwx------. 1 boinc boinc     36292 Oct  6 01:54 runpilot2-wrapper.sh
[2025-10-07 05:43:38] -rw-r--r--. 1 boinc boinc      5112 Oct  6 01:54 queuedata.json
[2025-10-07 05:43:38] -rw-r--r--. 1 boinc boinc       100 Oct  7 01:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-07 05:43:38] -rwxr-xr-x. 1 boinc boinc      7986 Oct  7 01:46 run_atlas
[2025-10-07 05:43:38] -rw-r--r--. 1 boinc boinc       105 Oct  7 01:46 job.xml
[2025-10-07 05:43:38] -rw-r--r--. 1 boinc boinc      6390 Oct  7 01:46 init_data.xml
[2025-10-07 05:43:38] -rw-r--r--. 2 boinc boinc 212050940 Oct  7 01:46 EVNT.46376901._003693.pool.root.1
[2025-10-07 05:43:38] -rw-r--r--. 2 boinc boinc     15120 Oct  7 01:46 start_atlas.sh
[2025-10-07 05:43:38] drwxrwx--x. 2 boinc boinc        68 Oct  7 01:46 shared
[2025-10-07 05:43:38] -rw-r--r--. 2 boinc boinc    565602 Oct  7 01:46 input.tar.gz
[2025-10-07 05:43:38] -rw-r--r--. 1 boinc boinc         0 Oct  7 01:46 boinc_lockfile
[2025-10-07 05:43:38] -rw-r--r--. 1 boinc boinc      2519 Oct  7 01:46 pandaJob.out
[2025-10-07 05:43:38] -rw-------. 1 boinc boinc    975012 Oct  7 01:49 agis_schedconf.cvmfs.json
[2025-10-07 05:43:38] drwx------. 4 boinc boinc      4096 Oct  7 01:50 pilot3
[2025-10-07 05:43:38] -rw-------. 1 boinc boinc 177962367 Oct  7 05:40 HITS.46376905._099897.pool.root.1
[2025-10-07 05:43:38] -rw-r--r--. 1 boinc boinc       531 Oct  7 05:40 boinc_task_state.xml
[2025-10-07 05:43:38] -rw-------. 1 boinc boinc      1017 Oct  7 05:41 memory_monitor_summary.json
[2025-10-07 05:43:38] -rw-------. 1 boinc boinc   1560401 Oct  7 05:41 agis_ddmendpoints.agis.ALL.json
[2025-10-07 05:43:38] -rw-------. 1 boinc boinc    444950 Oct  7 05:41 log.46376905._099897.job.log.tgz.1
[2025-10-07 05:43:38] -rw-------. 1 boinc boinc        95 Oct  7 05:42 pilot_heartbeat.json
[2025-10-07 05:43:38] -rw-------. 1 boinc boinc      7781 Oct  7 05:42 heartbeat.json
[2025-10-07 05:43:38] -rw-r--r--. 1 boinc boinc      8192 Oct  7 05:43 boinc_mmap_file
[2025-10-07 05:43:38] -rw-r--r--. 1 boinc boinc        28 Oct  7 05:43 wrapper_checkpoint.txt
[2025-10-07 05:43:38] -rw-------. 1 boinc boinc      5143 Oct  7 05:43 pilotlog.txt
[2025-10-07 05:43:38] -rw-------. 1 boinc boinc   1871461 Oct  7 05:43 log.46376905._099897.job.log.1
[2025-10-07 05:43:38] -rw-------. 1 boinc boinc       357 Oct  7 05:43 output.list
[2025-10-07 05:43:38] -rw-r--r--. 1 boinc boinc       620 Oct  7 05:43 runtime_log
[2025-10-07 05:43:38] -rw-------. 1 boinc boinc   2334720 Oct  7 05:43 result.tar.gz
[2025-10-07 05:43:38] -rw-r--r--. 1 boinc boinc      8717 Oct  7 05:43 runtime_log.err
[2025-10-07 05:43:38] -rw-------. 1 boinc boinc       656 Oct  7 05:43 OFGLDm1jnP8n9Rq4apOajLDm4fhM0noT9bVof3QYDmzwHMDmswLhLo.diag
[2025-10-07 05:43:38] -rw-r--r--. 1 boinc boinc     20679 Oct  7 05:43 stderr.txt
[2025-10-07 05:43:39] HITS file was successfully produced:
[2025-10-07 05:43:39] -rw-------. 1 boinc boinc 177962367 Oct  7 05:40 shared/HITS.pool.root.1
[2025-10-07 05:43:39]  *** Contents of shared directory: ***
[2025-10-07 05:43:39] total 383728
[2025-10-07 05:43:39] -rw-r--r--. 2 boinc boinc 212050940 Oct  7 01:46 ATLAS.root_0
[2025-10-07 05:43:39] -rw-r--r--. 2 boinc boinc     15120 Oct  7 01:46 start_atlas.sh
[2025-10-07 05:43:39] -rw-r--r--. 2 boinc boinc    565602 Oct  7 01:46 input.tar.gz
[2025-10-07 05:43:39] -rw-------. 1 boinc boinc 177962367 Oct  7 05:40 HITS.pool.root.1
[2025-10-07 05:43:39] -rw-------. 1 boinc boinc   2334720 Oct  7 05:43 result.tar.gz
05:43:40 (17989): run_atlas exited; CPU time 47749.138416
05:43:40 (17989): called boinc_finish(0)

</stderr_txt>
]]>

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