Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:27:49 (1372070): wrapper (7.7.26015): starting
20:27:49 (1372070): wrapper: running run_atlas (--nthreads 8)
[2025-10-05 20:27:49] Arguments: --nthreads 8
[2025-10-05 20:27:49] Threads: 8
[2025-10-05 20:27:49] Checking for CVMFS
[2025-10-05 20:27:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-05 20:27:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-05 20:27:50] Running cvmfs_config stat atlas.cern.ch
[2025-10-05 20:27:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-05 20:27:51] 2.13.2.0 112940 128751 387724 151380 0 594 38340190 40960001 101985 16776704 0 304000521 99.816 151999678 32847 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-05 20:27:51] CVMFS is ok
[2025-10-05 20:27:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-05 20:27:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-05 20:27:51] Further information can be found at the LHC@home message board.
[2025-10-05 20:27:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-05 20:27:51] Checking for apptainer binary...
[2025-10-05 20:27:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-05 20:27:51] Running /usr/bin/apptainer --version
[2025-10-05 20:27:51] apptainer version 1.4.2-1.el9
[2025-10-05 20:27:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-05 20:27:52] c8-7-3.aglt2.org
[2025-10-05 20:27:52] apptainer works
[2025-10-05 20:27:52] Set ATHENA_PROC_NUMBER=8
[2025-10-05 20:27:52] Set ATHENA_CORE_NUMBER=8
[2025-10-05 20:27:52] Starting ATLAS job with PandaID=6831805669
[2025-10-05 20:27:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-05 21:53:49]  *** The last 200 lines of the pilot log: ***
[2025-10-05 21:53:49] 2025-10-06 01:52:43,886 | INFO     | .. there are 83 such processes running
[2025-10-05 21:53:49] 2025-10-06 01:52:44,361 | INFO     | monitor loop #313: job 0:6831805669 is in state 'finished'
[2025-10-05 21:53:49] 2025-10-06 01:52:44,361 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-05 21:53:49] 2025-10-06 01:52:44,887 | INFO     | time since job start (5007s) is within the limit (172800.0s)
[2025-10-05 21:53:49] 2025-10-06 01:52:46,866 | INFO     | monitor loop #314: job 0:6831805669 is in state 'finished'
[2025-10-05 21:53:49] 2025-10-06 01:52:46,866 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-05 21:53:49] 2025-10-06 01:52:46,893 | INFO     | time since job start (5009s) is within the limit (172800.0s)
[2025-10-05 21:53:49] 2025-10-06 01:52:48,901 | INFO     | time since job start (5011s) is within the limit (172800.0s)
[2025-10-05 21:53:49] 2025-10-06 01:52:49,370 | INFO     | monitor loop #315: job 0:6831805669 is in state 'finished'
[2025-10-05 21:53:49] 2025-10-06 01:52:49,370 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-05 21:53:49] 2025-10-06 01:52:50,910 | INFO     | time since job start (5013s) is within the limit (172800.0s)
[2025-10-05 21:53:49] 2025-10-06 01:52:51,875 | INFO     | monitor loop #316: job 0:6831805669 is in state 'finished'
[2025-10-05 21:53:49] 2025-10-06 01:52:51,875 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-05 21:53:49] 2025-10-06 01:52:52,927 | INFO     | time since job start (5015s) is within the limit (172800.0s)
[2025-10-05 21:53:49] 2025-10-06 01:52:54,381 | INFO     | monitor loop #317: job 0:6831805669 is in state 'finished'
[2025-10-05 21:53:49] 2025-10-06 01:52:54,381 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-05 21:53:49] 2025-10-06 01:52:54,934 | INFO     | time since job start (5017s) is within the limit (172800.0s)
[2025-10-05 21:53:49] 2025-10-06 01:52:56,889 | INFO     | monitor loop #318: job 0:6831805669 is in state 'finished'
[2025-10-05 21:53:49] 2025-10-06 01:52:56,889 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-05 21:53:49] 2025-10-06 01:52:56,993 | INFO     | time since job start (5019s) is within the limit (172800.0s)
[2025-10-05 21:53:49] 2025-10-06 01:52:56,993 | INFO     | 5026s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-05 21:53:49] 2025-10-06 01:52:59,037 | INFO     | time since job start (5022s) is within the limit (172800.0s)
[2025-10-05 21:53:49] 2025-10-06 01:52:59,394 | INFO     | monitor loop #319: job 0:6831805669 is in state 'finished'
[2025-10-05 21:53:49] 2025-10-06 01:52:59,394 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-05 21:53:49] 2025-10-06 01:53:01,078 | INFO     | time since job start (5024s) is within the limit (172800.0s)
[2025-10-05 21:53:49] 2025-10-06 01:53:01,902 | INFO     | monitor loop #320: job 0:6831805669 is in state 'finished'
[2025-10-05 21:53:49] 2025-10-06 01:53:01,902 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-05 21:53:49] 2025-10-06 01:53:03,085 | INFO     | time since job start (5026s) is within the limit (172800.0s)
[2025-10-05 21:53:49] 2025-10-06 01:53:04,409 | INFO     | monitor loop #321: job 0:6831805669 is in state 'finished'
[2025-10-05 21:53:49] 2025-10-06 01:53:04,409 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-05 21:53:49] 2025-10-06 01:53:05,118 | INFO     | time since job start (5028s) is within the limit (172800.0s)
[2025-10-05 21:53:49] 2025-10-06 01:53:07,064 | INFO     | monitor loop #322: job 0:6831805669 is in state 'finished'
[2025-10-05 21:53:49] 2025-10-06 01:53:07,064 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-05 21:53:49] 2025-10-06 01:53:07,926 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-05 21:53:49] 2025-10-06 01:53:08,009 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.992289062506
[2025-10-05 21:53:49] 2025-10-06 01:53:08,894 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6831805669/memory_monitor_summary.json (trf name=prmon)
[2025-10-05 21:53:49] 2025-10-06 01:53:08,895 | INFO     | extracted standard info from prmon json
[2025-10-05 21:53:49] 2025-10-06 01:53:08,895 | INFO     | extracted standard memory fields from prmon json
[2025-10-05 21:53:49] 2025-10-06 01:53:08,895 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-05 21:53:49] 2025-10-06 01:53:08,895 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-05 21:53:49] 2025-10-06 01:53:08,895 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-05 21:53:49] 2025-10-06 01:53:08,903 | INFO     | fitting pss+swap vs Time
[2025-10-05 21:53:49] 2025-10-06 01:53:08,903 | INFO     | sum of square deviations: 115713097.94444431
[2025-10-05 21:53:49] 2025-10-06 01:53:08,904 | INFO     | sum of deviations: 3675602153.9166675
[2025-10-05 21:53:49] 2025-10-06 01:53:08,904 | INFO     | mean x: 1759713210.5277777
[2025-10-05 21:53:49] 2025-10-06 01:53:08,904 | INFO     | mean y: 2301638.7916666665
[2025-10-05 21:53:49] 2025-10-06 01:53:08,904 | INFO     | -- intersect: -55894617394.496216
[2025-10-05 21:53:49] 2025-10-06 01:53:08,904 | INFO     | intersect: -55894617394.496216
[2025-10-05 21:53:49] 2025-10-06 01:53:08,904 | INFO     | chi2: 0.273511093531187
[2025-10-05 21:53:49] 2025-10-06 01:53:08,904 | INFO     | -- intersect: -55894617394.496216
[2025-10-05 21:53:49] 2025-10-06 01:53:08,904 | INFO     | current memory leak: 31.76 B/s (using 72 data points, chi2=0.27)
[2025-10-05 21:53:49] 2025-10-06 01:53:08,904 | INFO     | could have reported an average CPU frequency of 3799 MHz (6 samples)
[2025-10-05 21:53:49] 2025-10-06 01:53:08,904 | INFO     | ..............................
[2025-10-05 21:53:49] 2025-10-06 01:53:08,904 | INFO     | . Timing measurements:
[2025-10-05 21:53:49] 2025-10-06 01:53:08,904 | INFO     | . get job = 0 s
[2025-10-05 21:53:49] 2025-10-06 01:53:08,905 | INFO     | . initial setup = 7 s
[2025-10-05 21:53:49] 2025-10-06 01:53:08,905 | INFO     | . payload setup = 53 s
[2025-10-05 21:53:49] 2025-10-06 01:53:08,905 | INFO     | . stage-in = 0 s
[2025-10-05 21:53:49] 2025-10-06 01:53:08,905 | INFO     | . payload execution = 4843 s
[2025-10-05 21:53:49] 2025-10-06 01:53:09,152 | INFO     | . stage-out = 1 s
[2025-10-05 21:53:49] 2025-10-06 01:53:09,152 | INFO     | . log creation = 0 s
[2025-10-05 21:53:49] 2025-10-06 01:53:09,152 | INFO     | ..............................
[2025-10-05 21:53:49] 2025-10-06 01:53:10,403 | INFO     | 
[2025-10-05 21:53:49] 2025-10-06 01:53:10,404 | INFO     | job summary report
[2025-10-05 21:53:49] 2025-10-06 01:53:10,404 | INFO     | --------------------------------------------------
[2025-10-05 21:53:49] 2025-10-06 01:53:10,404 | INFO     | PanDA job id: 6831805669
[2025-10-05 21:53:49] 2025-10-06 01:53:10,404 | INFO     | task id: 46376905
[2025-10-05 21:53:49] 2025-10-06 01:53:10,404 | INFO     | errors: (none)
[2025-10-05 21:53:49] 2025-10-06 01:53:10,404 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-05 21:53:49] 2025-10-06 01:53:10,404 | INFO     | pilot state: finished 
[2025-10-05 21:53:49] 2025-10-06 01:53:10,404 | INFO     | transexitcode: 0
[2025-10-05 21:53:49] 2025-10-06 01:53:10,404 | INFO     | exeerrorcode: 0
[2025-10-05 21:53:49] 2025-10-06 01:53:10,404 | INFO     | exeerrordiag: 
[2025-10-05 21:53:49] 2025-10-06 01:53:10,404 | INFO     | exitcode: 0
[2025-10-05 21:53:49] 2025-10-06 01:53:10,404 | INFO     | exitmsg: OK
[2025-10-05 21:53:49] 2025-10-06 01:53:10,404 | INFO     | cpuconsumptiontime: 19520 s
[2025-10-05 21:53:49] 2025-10-06 01:53:10,404 | INFO     | nevents: 400
[2025-10-05 21:53:49] 2025-10-06 01:53:10,404 | INFO     | neventsw: 0
[2025-10-05 21:53:49] 2025-10-06 01:53:10,404 | INFO     | pid: 1403994
[2025-10-05 21:53:49] 2025-10-06 01:53:10,404 | INFO     | pgrp: 1403994
[2025-10-05 21:53:49] 2025-10-06 01:53:10,404 | INFO     | corecount: 8
[2025-10-05 21:53:49] 2025-10-06 01:53:10,405 | INFO     | event service: False
[2025-10-05 21:53:49] 2025-10-06 01:53:10,405 | INFO     | sizes: {0: 2348645, 1: 2348844, 12: 2348844, 23: 2348872, 34: 2348900, 41: 2349190, 45: 2349346, 4900: 2375502, 4903: 2384500, 4904: 2384556, 4945: 2384750}
[2025-10-05 21:53:49] 2025-10-06 01:53:10,405 | INFO     | --------------------------------------------------
[2025-10-05 21:53:49] 2025-10-06 01:53:10,405 | INFO     | 
[2025-10-05 21:53:49] 2025-10-06 01:53:10,405 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-05 21:53:49] 2025-10-06 01:53:10,560 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-05 21:53:49] 2025-10-06 01:53:10,560 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-05 21:53:49] 2025-10-06 01:53:10,560 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-05 21:53:49] 2025-10-06 01:53:10,560 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-05 21:53:49] 2025-10-06 01:53:10,560 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-05 21:53:49] 2025-10-06 01:53:10,560 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-05 21:53:49] 2025-10-06 01:53:10,560 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-05 21:53:49] 2025-10-06 01:53:10,560 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-05 21:53:49] 2025-10-06 01:53:10,561 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-05 21:53:49] 2025-10-06 01:53:10,561 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-05 21:53:49] 2025-10-06 01:53:10,561 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-05 21:53:49] 2025-10-06 01:53:10,561 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-05 21:53:49] 2025-10-06 01:53:10,561 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-05 21:53:49] 2025-10-06 01:53:10,561 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-05 21:53:49] 2025-10-06 01:53:10,561 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-05 21:53:49] 2025-10-06 01:53:10,561 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-05 21:53:49] 2025-10-06 01:53:10,561 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-05 21:53:49] 2025-10-06 01:53:10,561 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-05 21:53:49] 2025-10-06 01:53:10,561 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-05 21:53:49] 2025-10-06 01:53:10,561 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-05 21:53:49] 2025-10-06 01:53:10,561 | INFO     | job 6831805669 has completed (purged errors)
[2025-10-05 21:53:49] 2025-10-06 01:53:10,561 | INFO     | overall cleanup function is called
[2025-10-05 21:53:49] 2025-10-06 01:53:11,594 | INFO     | --- collectZombieJob: --- 10, [1403994]
[2025-10-05 21:53:49] 2025-10-06 01:53:11,594 | INFO     | zombie collector waiting for pid 1403994
[2025-10-05 21:53:49] 2025-10-06 01:53:11,594 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-05 21:53:49] 2025-10-06 01:53:11,594 | INFO     | collected zombie processes
[2025-10-05 21:53:49] 2025-10-06 01:53:11,594 | INFO     | will attempt to kill all subprocesses of pid=1403994
[2025-10-05 21:53:49] 2025-10-06 01:53:13,073 | INFO     | PID=1379041 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-05 21:53:49] 2025-10-06 01:53:13,082 | INFO     | .. there are 83 such processes running
[2025-10-05 21:53:49] 2025-10-06 01:53:14,545 | INFO     | process IDs to be killed: [1403994] (in reverse order)
[2025-10-05 21:53:49] 2025-10-06 01:53:14,809 | WARNING  | found no corresponding commands to process id(s)
[2025-10-05 21:53:49] 2025-10-06 01:53:14,809 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-05 21:53:49] 2025-10-06 01:53:14,843 | INFO     | did not find any defunct processes belonging to 1403994
[2025-10-05 21:53:49] 2025-10-06 01:53:14,877 | INFO     | did not find any defunct processes belonging to 1403994
[2025-10-05 21:53:49] 2025-10-06 01:53:14,890 | INFO     | ready for new job
[2025-10-05 21:53:49] 2025-10-06 01:53:14,890 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-05 21:53:49] 2025-10-06 01:53:14,891 | INFO     | ***************************************
[2025-10-05 21:53:49] 2025-10-06 01:53:14,891 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-05 21:53:49] 2025-10-06 01:53:14,891 | INFO     | ***************************************
[2025-10-05 21:53:49] 2025-10-06 01:53:14,891 | INFO     | 
[2025-10-05 21:53:49] 2025-10-06 01:53:14,985 | INFO     | architecture information:
[2025-10-05 21:53:49] 2025-10-06 01:53:14,986 | INFO     | executing command: cat /etc/os-release
[2025-10-05 21:53:49] 2025-10-06 01:53:15,089 | INFO     | cat /etc/os-release:
[2025-10-05 21:53:49] NAME="CentOS Linux"
[2025-10-05 21:53:49] VERSION="7 (Core)"
[2025-10-05 21:53:49] ID="centos"
[2025-10-05 21:53:49] ID_LIKE="rhel fedora"
[2025-10-05 21:53:49] VERSION_ID="7"
[2025-10-05 21:53:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-05 21:53:49] ANSI_COLOR="0;31"
[2025-10-05 21:53:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-05 21:53:49] HOME_URL="https://www.centos.org/"
[2025-10-05 21:53:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-05 21:53:49] 
[2025-10-05 21:53:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-05 21:53:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-05 21:53:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-05 21:53:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-05 21:53:49] 
[2025-10-05 21:53:49] 2025-10-06 01:53:15,089 | INFO     | ***************************************
[2025-10-05 21:53:49] 2025-10-06 01:53:15,593 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-05 21:53:49] 2025-10-06 01:53:15,671 | INFO     | sufficient remaining disk space (169132163072 B)
[2025-10-05 21:53:49] 2025-10-06 01:53:15,671 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-05 21:53:49] 2025-10-06 01:53:15,672 | INFO     | current server update state: UPDATING_FINAL
[2025-10-05 21:53:49] 2025-10-06 01:53:15,672 | INFO     | update_server=False
[2025-10-05 21:53:49] 2025-10-06 01:53:15,672 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-05 21:53:49] 2025-10-06 01:53:15,672 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-05 21:53:49] 2025-10-06 01:53:15,684 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-05 21:53:49] 2025-10-06 01:53:15,794 | INFO     | all payload control threads have been joined
[2025-10-05 21:53:49] 2025-10-06 01:53:15,990 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-05 21:53:49] 2025-10-06 01:53:15,990 | INFO     | aborting loop
[2025-10-05 21:53:49] 2025-10-06 01:53:16,277 | INFO     | all data control threads have been joined
[2025-10-05 21:53:49] 2025-10-06 01:53:16,398 | INFO     | all job control threads have been joined
[2025-10-05 21:53:49] 2025-10-06 01:53:16,510 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-05 21:53:49] 2025-10-06 01:53:16,678 | INFO     | [job] retrieve thread has finished
[2025-10-05 21:53:49] 2025-10-06 01:53:16,710 | INFO     | [job] queue monitor thread has finished
[2025-10-05 21:53:49] 2025-10-06 01:53:16,799 | INFO     | [payload] control thread has finished
[2025-10-05 21:53:49] 2025-10-06 01:53:16,996 | INFO     | [job] job monitor thread has finished
[2025-10-05 21:53:49] 2025-10-06 01:53:17,013 | INFO     | [job] create_data_payload thread has finished
[2025-10-05 21:53:49] 2025-10-06 01:53:17,108 | INFO     | [payload] validate_post thread has finished
[2025-10-05 21:53:49] 2025-10-06 01:53:17,283 | INFO     | [data] control thread has finished
[2025-10-05 21:53:49] 2025-10-06 01:53:17,404 | INFO     | [job] control thread has finished
[2025-10-05 21:53:49] 2025-10-06 01:53:17,495 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-05 21:53:49] 2025-10-06 01:53:17,557 | INFO     | [payload] validate_pre thread has finished
[2025-10-05 21:53:49] 2025-10-06 01:53:17,557 | INFO     | [job] validate thread has finished
[2025-10-05 21:53:49] 2025-10-06 01:53:17,656 | INFO     | [payload] execute_payloads thread has finished
[2025-10-05 21:53:49] 2025-10-06 01:53:17,928 | INFO     | [data] copytool_in thread has finished
[2025-10-05 21:53:49] 2025-10-06 01:53:17,963 | INFO     | [payload] failed_post thread has finished
[2025-10-05 21:53:49] 2025-10-06 01:53:18,517 | INFO     | [data] copytool_out thread has finished
[2025-10-05 21:53:49] 2025-10-06 01:53:19,681 | INFO     | [data] queue_monitor thread has finished
[2025-10-05 21:53:49] 2025-10-06 01:53:25,695 | INFO     | [monitor] cgroup control has ended
[2025-10-05 21:53:49] 2025-10-06 01:53:27,293 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139802664359744)>', '<ExcThread(monitor, started 139801722353408)>']
[2025-10-05 21:53:49] 2025-10-06 01:53:32,318 | INFO     | all workflow threads have been joined
[2025-10-05 21:53:49] 2025-10-06 01:53:32,318 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-05 21:53:49] 2025-10-06 01:53:32,318 | INFO     | traces error code: 0
[2025-10-05 21:53:49] 2025-10-06 01:53:32,318 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-05 21:53:49] 2025-10-06 01:53:47,943 | INFO     | PID=1379041 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-05 21:53:49] 2025-10-06 01:53:47,943 | INFO     | .. there are 82 such processes running
[2025-10-05 21:53:49] 2025-10-06 01:53:47,943 | INFO     | found 0 job(s) in 20 queues
[2025-10-05 21:53:49] 2025-10-06 01:53:47,943 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-05 21:53:49] 2025-10-06 01:53:47,943 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-05 21:53:49] 2025-10-06 01:53:47,944 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-05 21:53:49] 2025-10-06 01:53:47,944 | CRITICAL | thread 'MainThread' is not alive
[2025-10-05 21:53:49] 2025-10-06 01:53:47,944 | INFO     | [monitor] control thread has ended
[2025-10-05 21:53:49] 2025-10-06 01:53:48,137 [wrapper] ==== pilot stdout END ====
[2025-10-05 21:53:49] 2025-10-06 01:53:48,211 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-05 21:53:49] 2025-10-06 01:53:48,228 [wrapper] pilotpid: 1379041
[2025-10-05 21:53:49] 2025-10-06 01:53:48,257 [wrapper] Pilot exit status: 0
[2025-10-05 21:53:49] 2025-10-06 01:53:48,446 [wrapper] pandaids: 6831805669
[2025-10-05 21:53:49] 2025-10-06 01:53:49,039 [wrapper] cleanup supervisor_pilot 2332772 1379042
[2025-10-05 21:53:49] 2025-10-06 01:53:49,055 [wrapper] Test setup, not cleaning
[2025-10-05 21:53:49] 2025-10-06 01:53:49,102 [wrapper] apfmon messages muted
[2025-10-05 21:53:49] 2025-10-06 01:53:49,129 [wrapper] ==== wrapper stdout END ====
[2025-10-05 21:53:49] 2025-10-06 01:53:49,168 [wrapper] ==== wrapper stderr END ====
[2025-10-05 21:53:49]  *** Error codes and diagnostics ***
[2025-10-05 21:53:49]     "exeErrorCode": 0,
[2025-10-05 21:53:49]     "exeErrorDiag": "",
[2025-10-05 21:53:49]     "pilotErrorCode": 0,
[2025-10-05 21:53:49]     "pilotErrorDiag": "",
[2025-10-05 21:53:49]  *** Listing of results directory ***
[2025-10-05 21:53:49] total 387200
[2025-10-05 21:53:49] -rw-r--r--. 1 boincer umatlas    552446 Oct  5 13:56 pilot3.tar.gz
[2025-10-05 21:53:49] -rw-r--r--. 1 boincer umatlas      5112 Oct  5 13:59 queuedata.json
[2025-10-05 21:53:49] -rwx------. 1 boincer umatlas     36292 Oct  5 13:59 runpilot2-wrapper.sh
[2025-10-05 21:53:49] -rw-r--r--. 1 boincer umatlas       100 Oct  5 20:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-05 21:53:49] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  5 20:27 run_atlas
[2025-10-05 21:53:49] -rw-r--r--. 1 boincer umatlas       105 Oct  5 20:27 job.xml
[2025-10-05 21:53:49] -rw-r--r--. 2 boincer umatlas 212640963 Oct  5 20:27 EVNT.46376901._003394.pool.root.1
[2025-10-05 21:53:49] drwxrwx--x. 2 boincer umatlas      4096 Oct  5 20:27 shared
[2025-10-05 21:53:49] -rw-r--r--. 2 boincer umatlas    565601 Oct  5 20:27 input.tar.gz
[2025-10-05 21:53:49] -rw-r--r--. 2 boincer umatlas     15120 Oct  5 20:27 start_atlas.sh
[2025-10-05 21:53:49] -rw-r--r--. 1 boincer umatlas         0 Oct  5 20:27 boinc_lockfile
[2025-10-05 21:53:49] -rw-r--r--. 1 boincer umatlas      2519 Oct  5 20:27 pandaJob.out
[2025-10-05 21:53:49] -rw-------. 1 boincer umatlas    974152 Oct  5 20:29 agis_schedconf.cvmfs.json
[2025-10-05 21:53:49] -rw-------. 1 boincer umatlas   1560401 Oct  5 20:29 agis_ddmendpoints.agis.ALL.json
[2025-10-05 21:53:49] drwx------. 4 boincer umatlas      4096 Oct  5 20:29 pilot3
[2025-10-05 21:53:49] -rw-r--r--. 1 boincer umatlas      7161 Oct  5 21:47 init_data.xml
[2025-10-05 21:53:49] -rw-------. 1 boincer umatlas 178038223 Oct  5 21:51 HITS.46376905._092095.pool.root.1
[2025-10-05 21:53:49] -rw-r--r--. 1 boincer umatlas       530 Oct  5 21:51 boinc_task_state.xml
[2025-10-05 21:53:49] -rw-------. 1 boincer umatlas      1050 Oct  5 21:52 memory_monitor_summary.json
[2025-10-05 21:53:49] -rw-------. 1 boincer umatlas    334206 Oct  5 21:52 log.46376905._092095.job.log.tgz.1
[2025-10-05 21:53:49] -rw-------. 1 boincer umatlas        95 Oct  5 21:52 pilot_heartbeat.json
[2025-10-05 21:53:49] -rw-------. 1 boincer umatlas      7809 Oct  5 21:53 heartbeat.json
[2025-10-05 21:53:49] -rw-r--r--. 1 boincer umatlas      8192 Oct  5 21:53 boinc_mmap_file
[2025-10-05 21:53:49] -rw-r--r--. 1 boincer umatlas        27 Oct  5 21:53 wrapper_checkpoint.txt
[2025-10-05 21:53:49] -rw-------. 1 boincer umatlas       893 Oct  5 21:53 pilotlog.txt
[2025-10-05 21:53:49] -rw-------. 1 boincer umatlas    631315 Oct  5 21:53 log.46376905._092095.job.log.1
[2025-10-05 21:53:49] -rw-------. 1 boincer umatlas       357 Oct  5 21:53 output.list
[2025-10-05 21:53:49] -rw-r--r--. 1 boincer umatlas       620 Oct  5 21:53 runtime_log
[2025-10-05 21:53:49] -rw-------. 1 boincer umatlas    983040 Oct  5 21:53 result.tar.gz
[2025-10-05 21:53:49] -rw-r--r--. 1 boincer umatlas      8693 Oct  5 21:53 runtime_log.err
[2025-10-05 21:53:49] -rw-------. 1 boincer umatlas       653 Oct  5 21:53 6DzMDmeCiP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmYXQNDmSaPSNm.diag
[2025-10-05 21:53:49] -rw-r--r--. 1 boincer umatlas     22271 Oct  5 21:53 stderr.txt
[2025-10-05 21:53:49] HITS file was successfully produced:
[2025-10-05 21:53:49] -rw-------. 1 boincer umatlas 178038223 Oct  5 21:51 shared/HITS.pool.root.1
[2025-10-05 21:53:49]  *** Contents of shared directory: ***
[2025-10-05 21:53:49] total 383068
[2025-10-05 21:53:49] -rw-r--r--. 2 boincer umatlas 212640963 Oct  5 20:27 ATLAS.root_0
[2025-10-05 21:53:49] -rw-r--r--. 2 boincer umatlas    565601 Oct  5 20:27 input.tar.gz
[2025-10-05 21:53:49] -rw-r--r--. 2 boincer umatlas     15120 Oct  5 20:27 start_atlas.sh
[2025-10-05 21:53:49] -rw-------. 1 boincer umatlas 178038223 Oct  5 21:51 HITS.pool.root.1
[2025-10-05 21:53:49] -rw-------. 1 boincer umatlas    983040 Oct  5 21:53 result.tar.gz
21:53:51 (1372070): run_atlas exited; CPU time 19718.438825
21:53:51 (1372070): called boinc_finish(0)

</stderr_txt>
]]>

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