Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
01:57:27 (9050): wrapper (7.7.26015): starting
01:57:27 (9050): wrapper: running run_atlas (--nthreads 8)
[2025-10-06 01:57:27] Arguments: --nthreads 8
[2025-10-06 01:57:27] Threads: 8
[2025-10-06 01:57:27] Checking for CVMFS
[2025-10-06 01:57:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-06 01:57:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-06 01:57:27] Running cvmfs_config stat atlas.cern.ch
[2025-10-06 01:57:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-06 01:57:27] 2.11.0.0 12329 25175 58564 151379 2 188 3058809 4096000 1834 130560 0 6386936 99.783 2078174 323 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-10-06 01:57:27] CVMFS is ok
[2025-10-06 01:57:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-06 01:57:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-06 01:57:27] Further information can be found at the LHC@home message board.
[2025-10-06 01:57:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-06 01:57:27] Checking for apptainer binary...
[2025-10-06 01:57:27] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-10-06 01:57:27] apptainer is not installed, using version from CVMFS
[2025-10-06 01:57:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-06 01:57:28] WARNING: Environment variable TMPDIR already has value [/tmp/job_10199582/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node159
[2025-10-06 01:57:28] apptainer works
[2025-10-06 01:57:28] Set ATHENA_PROC_NUMBER=8
[2025-10-06 01:57:28] Set ATHENA_CORE_NUMBER=8
[2025-10-06 01:57:28] Starting ATLAS job with PandaID=6831775252
[2025-10-06 01:57:28] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10199582/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-06 02:40:55]  *** The last 200 lines of the pilot log: ***
[2025-10-06 02:40:55]  replicas=None
[2025-10-06 02:40:55]  scope=mc23_13p6TeV
[2025-10-06 02:40:55]  status=None
[2025-10-06 02:40:55]  status_code=0
[2025-10-06 02:40:55]  storage_token=
[2025-10-06 02:40:55]  surl=/tmp/job_10199582/atlas/pilot/slots/0/PanDA_Pilot-6831775252/log.46376905._090193.job.log.tgz.1
[2025-10-06 02:40:55]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/15/cf/log.46376905._090193.job.log.tgz.1
[2025-10-06 02:40:55]  workdir=None
[2025-10-06 02:40:55] ]
[2025-10-06 02:40:55] 2025-10-06 00:40:18,115 | INFO     | transferring file log.46376905._090193.job.log.tgz.1 from /tmp/job_10199582/atlas/pilot/slots/0/PanDA_Pilot-6831775252/log.46376905._090193.job.log.tgz.1 to /tmp/j
[2025-10-06 02:40:55] 2025-10-06 00:40:18,115 | INFO     | executing command: /usr/bin/env mv /tmp/job_10199582/atlas/pilot/slots/0/PanDA_Pilot-6831775252/log.46376905._090193.job.log.tgz.1 /tmp/job_10199582/atlas/pilot/sl
[2025-10-06 02:40:55] 2025-10-06 00:40:18,123 | INFO     | adding to output.list: log.46376905._090193.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/15/cf/log.46376905._090193.job.log.tg
[2025-10-06 02:40:55] 2025-10-06 00:40:18,124 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-06 02:40:55] 2025-10-06 00:40:18,124 | INFO     | summary of transferred files:
[2025-10-06 02:40:55] 2025-10-06 00:40:18,124 | INFO     |  -- lfn=log.46376905._090193.job.log.tgz.1, status_code=0, status=transferred
[2025-10-06 02:40:55] 2025-10-06 00:40:18,124 | INFO     | stage-out finished correctly
[2025-10-06 02:40:55] 2025-10-06 00:40:18,177 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-06 02:40:55] 2025-10-06 00:40:19,622 | INFO     | time since job start (2564s) is within the limit (172800.0s)
[2025-10-06 02:40:55] 2025-10-06 00:40:20,209 | INFO     | job 6831775252 has state=finished
[2025-10-06 02:40:55] 2025-10-06 00:40:20,210 | INFO     | preparing for final server update for job 6831775252 in state='finished'
[2025-10-06 02:40:55] 2025-10-06 00:40:20,210 | INFO     | this job has now completed (state=finished)
[2025-10-06 02:40:55] 2025-10-06 00:40:20,210 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-06 02:40:55] 2025-10-06 00:40:20,210 | INFO     | log transfer has been attempted: DONE
[2025-10-06 02:40:55] 2025-10-06 00:40:20,210 | INFO     | job 6831775252 has finished - writing final server update
[2025-10-06 02:40:55] 2025-10-06 00:40:20,210 | INFO     | total number of processed events: 400 (read)
[2025-10-06 02:40:55] 2025-10-06 00:40:20,211 | INFO     | executing command: lscpu
[2025-10-06 02:40:55] 2025-10-06 00:40:20,252 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-06 02:40:55] 2025-10-06 00:40:21,627 | INFO     | time since job start (2566s) is within the limit (172800.0s)
[2025-10-06 02:40:55] 2025-10-06 00:40:21,728 | WARNING  | process 22514 can no longer be monitored (due to stat problems) - aborting
[2025-10-06 02:40:55] 2025-10-06 00:40:21,728 | INFO     | using path: /tmp/job_10199582/atlas/pilot/slots/0/PanDA_Pilot-6831775252/memory_monitor_summary.json (trf name=prmon)
[2025-10-06 02:40:55] 2025-10-06 00:40:21,897 | INFO     | number of running child processes to parent process 22514: 1
[2025-10-06 02:40:55] 2025-10-06 00:40:21,897 | INFO     | maximum number of monitored processes: 6
[2025-10-06 02:40:55] 2025-10-06 00:40:22,326 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-06 02:40:55] 2025-10-06 00:40:22,334 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2469.384546875
[2025-10-06 02:40:55] 2025-10-06 00:40:22,356 | INFO     | using path: /tmp/job_10199582/atlas/pilot/slots/0/PanDA_Pilot-6831775252/memory_monitor_summary.json (trf name=prmon)
[2025-10-06 02:40:55] 2025-10-06 00:40:22,357 | INFO     | extracted standard info from prmon json
[2025-10-06 02:40:55] 2025-10-06 00:40:22,357 | INFO     | extracted standard memory fields from prmon json
[2025-10-06 02:40:55] 2025-10-06 00:40:22,357 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-06 02:40:55] 2025-10-06 00:40:22,357 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-06 02:40:55] 2025-10-06 00:40:22,357 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-06 02:40:55] 2025-10-06 00:40:22,358 | INFO     | fitting pss+swap vs Time
[2025-10-06 02:40:55] 2025-10-06 00:40:22,358 | INFO     | sum of square deviations: 13283970.0
[2025-10-06 02:40:55] 2025-10-06 00:40:22,358 | INFO     | sum of deviations: -1306422665.0000002
[2025-10-06 02:40:55] 2025-10-06 00:40:22,358 | INFO     | mean x: 1759710016.0
[2025-10-06 02:40:55] 2025-10-06 00:40:22,358 | INFO     | mean y: 2576407.4285714286
[2025-10-06 02:40:55] 2025-10-06 00:40:22,358 | INFO     | -- intersect: 173062666781.7604
[2025-10-06 02:40:55] 2025-10-06 00:40:22,358 | INFO     | intersect: 173062666781.7604
[2025-10-06 02:40:55] 2025-10-06 00:40:22,358 | INFO     | chi2: 0.008631152862435858
[2025-10-06 02:40:55] 2025-10-06 00:40:22,358 | INFO     | -- intersect: 173062666781.7604
[2025-10-06 02:40:55] 2025-10-06 00:40:22,358 | INFO     | current memory leak: -98.35 B/s (using 35 data points, chi2=0.01)
[2025-10-06 02:40:55] 2025-10-06 00:40:22,358 | INFO     | could have reported an average CPU frequency of 2481 MHz (5 samples)
[2025-10-06 02:40:55] 2025-10-06 00:40:22,358 | INFO     | ..............................
[2025-10-06 02:40:55] 2025-10-06 00:40:22,358 | INFO     | . Timing measurements:
[2025-10-06 02:40:55] 2025-10-06 00:40:22,358 | INFO     | . get job = 0 s
[2025-10-06 02:40:55] 2025-10-06 00:40:22,358 | INFO     | . initial setup = 1 s
[2025-10-06 02:40:55] 2025-10-06 00:40:22,358 | INFO     | . payload setup = 2 s
[2025-10-06 02:40:55] 2025-10-06 00:40:22,359 | INFO     | . stage-in = 0 s
[2025-10-06 02:40:55] 2025-10-06 00:40:22,359 | INFO     | . payload execution = 2543 s
[2025-10-06 02:40:55] 2025-10-06 00:40:22,359 | INFO     | . stage-out = 0 s
[2025-10-06 02:40:55] 2025-10-06 00:40:22,359 | INFO     | . log creation = 0 s
[2025-10-06 02:40:55] 2025-10-06 00:40:22,359 | INFO     | ..............................
[2025-10-06 02:40:55] 2025-10-06 00:40:22,410 | INFO     | 
[2025-10-06 02:40:55] 2025-10-06 00:40:22,410 | INFO     | job summary report
[2025-10-06 02:40:55] 2025-10-06 00:40:22,410 | INFO     | --------------------------------------------------
[2025-10-06 02:40:55] 2025-10-06 00:40:22,410 | INFO     | PanDA job id: 6831775252
[2025-10-06 02:40:55] 2025-10-06 00:40:22,411 | INFO     | task id: 46376905
[2025-10-06 02:40:55] 2025-10-06 00:40:22,411 | INFO     | errors: (none)
[2025-10-06 02:40:55] 2025-10-06 00:40:22,411 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-06 02:40:55] 2025-10-06 00:40:22,411 | INFO     | pilot state: finished 
[2025-10-06 02:40:55] 2025-10-06 00:40:22,411 | INFO     | transexitcode: 0
[2025-10-06 02:40:55] 2025-10-06 00:40:22,411 | INFO     | exeerrorcode: 0
[2025-10-06 02:40:55] 2025-10-06 00:40:22,411 | INFO     | exeerrordiag: 
[2025-10-06 02:40:55] 2025-10-06 00:40:22,411 | INFO     | exitcode: 0
[2025-10-06 02:40:55] 2025-10-06 00:40:22,411 | INFO     | exitmsg: OK
[2025-10-06 02:40:55] 2025-10-06 00:40:22,411 | INFO     | cpuconsumptiontime: 18653 s
[2025-10-06 02:40:55] 2025-10-06 00:40:22,411 | INFO     | nevents: 400
[2025-10-06 02:40:55] 2025-10-06 00:40:22,411 | INFO     | neventsw: 0
[2025-10-06 02:40:55] 2025-10-06 00:40:22,411 | INFO     | pid: 22514
[2025-10-06 02:40:55] 2025-10-06 00:40:22,411 | INFO     | pgrp: 22514
[2025-10-06 02:40:55] 2025-10-06 00:40:22,411 | INFO     | corecount: 8
[2025-10-06 02:40:55] 2025-10-06 00:40:22,411 | INFO     | event service: False
[2025-10-06 02:40:55] 2025-10-06 00:40:22,411 | INFO     | sizes: {0: 2348660, 1: 2348970, 3: 2349232, 11: 2349260, 2550: 2383572, 2554: 2383742}
[2025-10-06 02:40:55] 2025-10-06 00:40:22,411 | INFO     | --------------------------------------------------
[2025-10-06 02:40:55] 2025-10-06 00:40:22,411 | INFO     | 
[2025-10-06 02:40:55] 2025-10-06 00:40:22,411 | INFO     | executing command: ls -lF /tmp/job_10199582/atlas/pilot/slots/0
[2025-10-06 02:40:55] 2025-10-06 00:40:22,421 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-06 02:40:55] 2025-10-06 00:40:22,422 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-06 02:40:55] 2025-10-06 00:40:22,422 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-06 02:40:55] 2025-10-06 00:40:22,422 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-06 02:40:55] 2025-10-06 00:40:22,422 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-06 02:40:55] 2025-10-06 00:40:22,422 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-06 02:40:55] 2025-10-06 00:40:22,422 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-06 02:40:55] 2025-10-06 00:40:22,422 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-06 02:40:55] 2025-10-06 00:40:22,422 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-06 02:40:55] 2025-10-06 00:40:22,422 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-06 02:40:55] 2025-10-06 00:40:22,422 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-06 02:40:55] 2025-10-06 00:40:22,422 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-06 02:40:55] 2025-10-06 00:40:22,422 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-06 02:40:55] 2025-10-06 00:40:22,422 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-06 02:40:55] 2025-10-06 00:40:22,422 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-06 02:40:55] 2025-10-06 00:40:22,422 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-06 02:40:55] 2025-10-06 00:40:22,422 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-06 02:40:55] 2025-10-06 00:40:22,422 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-06 02:40:55] 2025-10-06 00:40:22,422 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-06 02:40:55] 2025-10-06 00:40:22,422 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-06 02:40:55] 2025-10-06 00:40:22,422 | INFO     | job 6831775252 has completed (purged errors)
[2025-10-06 02:40:55] 2025-10-06 00:40:22,423 | INFO     | overall cleanup function is called
[2025-10-06 02:40:55] 2025-10-06 00:40:23,428 | INFO     | --- collectZombieJob: --- 10, [22514]
[2025-10-06 02:40:55] 2025-10-06 00:40:23,429 | INFO     | zombie collector waiting for pid 22514
[2025-10-06 02:40:55] 2025-10-06 00:40:23,429 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-06 02:40:55] 2025-10-06 00:40:23,429 | INFO     | collected zombie processes
[2025-10-06 02:40:55] 2025-10-06 00:40:23,429 | INFO     | will attempt to kill all subprocesses of pid=22514
[2025-10-06 02:40:55] 2025-10-06 00:40:23,591 | INFO     | process IDs to be killed: [22514] (in reverse order)
[2025-10-06 02:40:55] 2025-10-06 00:40:23,639 | WARNING  | found no corresponding commands to process id(s)
[2025-10-06 02:40:55] 2025-10-06 00:40:23,640 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-06 02:40:55] 2025-10-06 00:40:23,649 | INFO     | did not find any defunct processes belonging to 22514
[2025-10-06 02:40:55] 2025-10-06 00:40:23,654 | INFO     | did not find any defunct processes belonging to 22514
[2025-10-06 02:40:55] 2025-10-06 00:40:23,654 | INFO     | ready for new job
[2025-10-06 02:40:55] 2025-10-06 00:40:23,654 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-06 02:40:55] 2025-10-06 00:40:23,654 | INFO     | ***************************************
[2025-10-06 02:40:55] 2025-10-06 00:40:23,655 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-06 02:40:55] 2025-10-06 00:40:23,655 | INFO     | ***************************************
[2025-10-06 02:40:55] 2025-10-06 00:40:23,655 | INFO     | 
[2025-10-06 02:40:55] 2025-10-06 00:40:23,670 | INFO     | architecture information:
[2025-10-06 02:40:55] 2025-10-06 00:40:23,670 | INFO     | executing command: cat /etc/os-release
[2025-10-06 02:40:55] 2025-10-06 00:40:23,677 | INFO     | cat /etc/os-release:
[2025-10-06 02:40:55] NAME="CentOS Linux"
[2025-10-06 02:40:55] VERSION="7 (Core)"
[2025-10-06 02:40:55] ID="centos"
[2025-10-06 02:40:55] ID_LIKE="rhel fedora"
[2025-10-06 02:40:55] VERSION_ID="7"
[2025-10-06 02:40:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-06 02:40:55] ANSI_COLOR="0;31"
[2025-10-06 02:40:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-06 02:40:55] HOME_URL="https://www.centos.org/"
[2025-10-06 02:40:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-06 02:40:55] 
[2025-10-06 02:40:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-06 02:40:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-06 02:40:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-06 02:40:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-06 02:40:55] 
[2025-10-06 02:40:55] 2025-10-06 00:40:23,677 | INFO     | ***************************************
[2025-10-06 02:40:55] 2025-10-06 00:40:24,180 | INFO     | executing command: df -mP /tmp/job_10199582/atlas/pilot/slots/0
[2025-10-06 02:40:55] 2025-10-06 00:40:24,188 | INFO     | sufficient remaining disk space (225742684160 B)
[2025-10-06 02:40:55] 2025-10-06 00:40:24,188 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-06 02:40:55] 2025-10-06 00:40:24,188 | INFO     | current server update state: UPDATING_FINAL
[2025-10-06 02:40:55] 2025-10-06 00:40:24,188 | INFO     | update_server=False
[2025-10-06 02:40:55] 2025-10-06 00:40:24,188 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-06 02:40:55] 2025-10-06 00:40:24,188 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-06 02:40:55] 2025-10-06 00:40:24,188 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-06 02:40:55] 2025-10-06 00:40:24,231 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-06 02:40:55] 2025-10-06 00:40:24,400 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-06 02:40:55] 2025-10-06 00:40:24,400 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-06 02:40:55] 2025-10-06 00:40:24,400 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-06 02:40:55] 2025-10-06 00:40:24,400 | INFO     | will abort loop
[2025-10-06 02:40:55] 2025-10-06 00:40:24,400 | INFO     | job.realtimelogging is not enabled
[2025-10-06 02:40:55] 2025-10-06 00:40:24,786 | INFO     | all payload control threads have been joined
[2025-10-06 02:40:55] 2025-10-06 00:40:24,818 | INFO     | all data control threads have been joined
[2025-10-06 02:40:55] 2025-10-06 00:40:25,193 | INFO     | [job] retrieve thread has finished
[2025-10-06 02:40:55] 2025-10-06 00:40:25,193 | INFO     | [job] queue monitor thread has finished
[2025-10-06 02:40:55] 2025-10-06 00:40:25,213 | INFO     | all job control threads have been joined
[2025-10-06 02:40:55] 2025-10-06 00:40:25,218 | INFO     | [payload] failed_post thread has finished
[2025-10-06 02:40:55] 2025-10-06 00:40:25,405 | INFO     | [job] job monitor thread has finished
[2025-10-06 02:40:55] 2025-10-06 00:40:25,405 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-06 02:40:55] 2025-10-06 00:40:25,582 | INFO     | [data] copytool_in thread has finished
[2025-10-06 02:40:55] 2025-10-06 00:40:25,791 | INFO     | [payload] control thread has finished
[2025-10-06 02:40:55] 2025-10-06 00:40:25,823 | INFO     | [data] control thread has finished
[2025-10-06 02:40:55] 2025-10-06 00:40:26,193 | INFO     | [data] copytool_out thread has finished
[2025-10-06 02:40:55] 2025-10-06 00:40:26,209 | INFO     | [payload] execute_payloads thread has finished
[2025-10-06 02:40:55] 2025-10-06 00:40:26,218 | INFO     | [job] control thread has finished
[2025-10-06 02:40:55] 2025-10-06 00:40:26,286 | INFO     | [payload] validate_pre thread has finished
[2025-10-06 02:40:55] 2025-10-06 00:40:26,310 | INFO     | [job] validate thread has finished
[2025-10-06 02:40:55] 2025-10-06 00:40:26,405 | INFO     | [job] create_data_payload thread has finished
[2025-10-06 02:40:55] 2025-10-06 00:40:26,760 | INFO     | [payload] validate_post thread has finished
[2025-10-06 02:40:55] 2025-10-06 00:40:28,236 | INFO     | [data] queue_monitor thread has finished
[2025-10-06 02:40:55] 2025-10-06 00:40:39,047 | INFO     | [monitor] cgroup control has ended
[2025-10-06 02:40:55] 2025-10-06 00:40:40,495 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456060544768)>']
[2025-10-06 02:40:55] 2025-10-06 00:40:45,520 | INFO     | all workflow threads have been joined
[2025-10-06 02:40:55] 2025-10-06 00:40:45,521 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-06 02:40:55] 2025-10-06 00:40:45,521 | INFO     | traces error code: 0
[2025-10-06 02:40:55] 2025-10-06 00:40:45,521 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-06 02:40:55] 2025-10-06 00:40:54,904 | INFO     | PID=14153 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-06 02:40:55] 2025-10-06 00:40:54,905 | INFO     | .. there are 2 such processes running
[2025-10-06 02:40:55] 2025-10-06 00:40:54,905 | INFO     | found 0 job(s) in 20 queues
[2025-10-06 02:40:55] 2025-10-06 00:40:54,905 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-06 02:40:55] 2025-10-06 00:40:54,905 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-06 02:40:55] 2025-10-06 00:40:54,905 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-06 02:40:55] 2025-10-06 00:40:54,905 | CRITICAL | thread 'MainThread' is not alive
[2025-10-06 02:40:55] 2025-10-06 00:40:54,905 | INFO     | [monitor] control thread has ended
[2025-10-06 02:40:55] 2025-10-06 00:40:54,962 [wrapper] ==== pilot stdout END ====
[2025-10-06 02:40:55] 2025-10-06 00:40:54,963 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-06 02:40:55] 2025-10-06 00:40:54,965 [wrapper] pilotpid: 14153
[2025-10-06 02:40:55] 2025-10-06 00:40:54,966 [wrapper] Pilot exit status: 0
[2025-10-06 02:40:55] 2025-10-06 00:40:54,971 [wrapper] pandaids: 6831775252
[2025-10-06 02:40:55] 2025-10-06 00:40:55,006 [wrapper] cleanup supervisor_pilot 31476 14154
[2025-10-06 02:40:55] 2025-10-06 00:40:55,007 [wrapper] Test setup, not cleaning
[2025-10-06 02:40:55] 2025-10-06 00:40:55,009 [wrapper] apfmon messages muted
[2025-10-06 02:40:55] 2025-10-06 00:40:55,010 [wrapper] ==== wrapper stdout END ====
[2025-10-06 02:40:55] 2025-10-06 00:40:55,011 [wrapper] ==== wrapper stderr END ====
[2025-10-06 02:40:55]  *** Error codes and diagnostics ***
[2025-10-06 02:40:55]     "exeErrorCode": 0,
[2025-10-06 02:40:55]     "exeErrorDiag": "",
[2025-10-06 02:40:55]     "pilotErrorCode": 0,
[2025-10-06 02:40:55]     "pilotErrorDiag": "",
[2025-10-06 02:40:55]  *** Listing of results directory ***
[2025-10-06 02:40:55] total 382544
[2025-10-06 02:40:55] -rw------- 1 mf493845 unix-user    552446 Oct  5 18:06 pilot3.tar.gz
[2025-10-06 02:40:55] -rwx------ 1 mf493845 unix-user     36292 Oct  5 18:40 runpilot2-wrapper.sh
[2025-10-06 02:40:55] -rw------- 1 mf493845 unix-user      5112 Oct  5 18:40 queuedata.json
[2025-10-06 02:40:55] -rw------- 1 mf493845 unix-user       100 Oct  6 01:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-06 02:40:55] -rwxr-xr-x 1 mf493845 unix-user      7986 Oct  6 01:03 run_atlas
[2025-10-06 02:40:55] -rw------- 1 mf493845 unix-user       105 Oct  6 01:03 job.xml
[2025-10-06 02:40:55] -rw-r--r-- 2 mf493845 unix-user 213015386 Oct  6 01:57 EVNT.46376901._003320.pool.root.1
[2025-10-06 02:40:55] -rw-r--r-- 2 mf493845 unix-user     15120 Oct  6 01:57 start_atlas.sh
[2025-10-06 02:40:55] drwxrwx--x 2 mf493845 unix-user       100 Oct  6 01:57 shared
[2025-10-06 02:40:55] -rw-r--r-- 2 mf493845 unix-user    565595 Oct  6 01:57 input.tar.gz
[2025-10-06 02:40:55] -rw------- 1 mf493845 unix-user      6388 Oct  6 01:57 init_data.xml
[2025-10-06 02:40:55] -rw------- 1 mf493845 unix-user         0 Oct  6 01:57 boinc_setup_complete
[2025-10-06 02:40:55] -rw------- 1 mf493845 unix-user      8192 Oct  6 01:57 boinc_mmap_file
[2025-10-06 02:40:55] -rw------- 1 mf493845 unix-user         0 Oct  6 01:57 boinc_lockfile
[2025-10-06 02:40:55] -rw------- 1 mf493845 unix-user      2519 Oct  6 01:57 pandaJob.out
[2025-10-06 02:40:55] -rw------- 1 mf493845 unix-user    974144 Oct  6 01:57 agis_schedconf.cvmfs.json
[2025-10-06 02:40:55] -rw------- 1 mf493845 unix-user   1560401 Oct  6 01:57 agis_ddmendpoints.agis.ALL.json
[2025-10-06 02:40:55] drwx------ 4 mf493845 unix-user       400 Oct  6 01:57 pilot3
[2025-10-06 02:40:55] -rw------- 1 mf493845 unix-user 173453631 Oct  6 02:39 HITS.46376905._090193.pool.root.1
[2025-10-06 02:40:55] -rw------- 1 mf493845 unix-user      1018 Oct  6 02:40 memory_monitor_summary.json
[2025-10-06 02:40:55] -rw------- 1 mf493845 unix-user    291987 Oct  6 02:40 log.46376905._090193.job.log.tgz.1
[2025-10-06 02:40:55] -rw------- 1 mf493845 unix-user      7777 Oct  6 02:40 heartbeat.json
[2025-10-06 02:40:55] -rw------- 1 mf493845 unix-user       890 Oct  6 02:40 pilotlog.txt
[2025-10-06 02:40:55] -rw------- 1 mf493845 unix-user        95 Oct  6 02:40 pilot_heartbeat.json
[2025-10-06 02:40:55] -rw------- 1 mf493845 unix-user    409621 Oct  6 02:40 log.46376905._090193.job.log.1
[2025-10-06 02:40:55] -rw------- 1 mf493845 unix-user       357 Oct  6 02:40 output.list
[2025-10-06 02:40:55] -rw------- 1 mf493845 unix-user       620 Oct  6 02:40 runtime_log
[2025-10-06 02:40:55] -rw------- 1 mf493845 unix-user    716800 Oct  6 02:40 result.tar.gz
[2025-10-06 02:40:55] -rw------- 1 mf493845 unix-user      9076 Oct  6 02:40 runtime_log.err
[2025-10-06 02:40:55] -rw------- 1 mf493845 unix-user       641 Oct  6 02:40 iWuMDmXxgP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrCQNDmiqjI9m.diag
[2025-10-06 02:40:55] -rw------- 1 mf493845 unix-user     22240 Oct  6 02:40 stderr.txt
[2025-10-06 02:40:55] HITS file was successfully produced:
[2025-10-06 02:40:55] -rw------- 1 mf493845 unix-user 173453631 Oct  6 02:39 shared/HITS.pool.root.1
[2025-10-06 02:40:55]  *** Contents of shared directory: ***
[2025-10-06 02:40:55] total 378688
[2025-10-06 02:40:55] -rw-r--r-- 2 mf493845 unix-user 213015386 Oct  6 01:57 ATLAS.root_0
[2025-10-06 02:40:55] -rw-r--r-- 2 mf493845 unix-user     15120 Oct  6 01:57 start_atlas.sh
[2025-10-06 02:40:55] -rw-r--r-- 2 mf493845 unix-user    565595 Oct  6 01:57 input.tar.gz
[2025-10-06 02:40:55] -rw------- 1 mf493845 unix-user 173453631 Oct  6 02:39 HITS.pool.root.1
[2025-10-06 02:40:55] -rw------- 1 mf493845 unix-user    716800 Oct  6 02:40 result.tar.gz
02:40:56 (9050): run_atlas exited; CPU time 18706.579524
02:40:56 (9050): called boinc_finish(0)

</stderr_txt>
]]>

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