Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
05:51:18 (2882638): wrapper (7.7.26015): starting
05:51:18 (2882638): wrapper: running run_atlas (--nthreads 4)
[2025-10-06 05:51:18] Arguments: --nthreads 4
[2025-10-06 05:51:18] Threads: 4
[2025-10-06 05:51:18] Checking for CVMFS
[2025-10-06 05:51:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-06 05:51:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-06 05:51:18] Running cvmfs_config stat atlas.cern.ch
[2025-10-06 05:51:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-06 05:51:18] 2.13.2.0 612851 4760 62620 151385 1 57 2996912 4194304 918 130560 245 6134636 96.138 24848150 312 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-06 05:51:18] CVMFS is ok
[2025-10-06 05:51:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-06 05:51:18] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-06 05:51:18] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-06 05:51:18] Further information can be found at the LHC@home message board.
[2025-10-06 05:51:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-06 05:51:18] Checking for apptainer binary...
[2025-10-06 05:51:18] apptainer is not installed, using version from CVMFS
[2025-10-06 05:51:18] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-06 05:51:21] Ryze
[2025-10-06 05:51:21] apptainer works
[2025-10-06 05:51:21] Set ATHENA_PROC_NUMBER=4
[2025-10-06 05:51:21] Set ATHENA_CORE_NUMBER=4
[2025-10-06 05:51:21] Starting ATLAS job with PandaID=6831880650
[2025-10-06 05:51:21] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-06 06:00:14]  *** The last 200 lines of the pilot log: ***
[2025-10-06 06:00:14] 2025-10-06 03:59:41,619 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-06 06:00:14] 2025-10-06 03:59:41,619 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-06 06:00:14] 2025-10-06 03:59:41,619 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-06 06:00:14] 2025-10-06 03:59:41,619 | WARNING  | wrong length of table data, x=[1759722756.0, 1759722817.0, 1759722878.0, 1759722939.0, 1759723000.0], y=[1099.0, 271590.0, 861380.0, 1182968.0, 1903141.0] (must be
[2025-10-06 06:00:14] 2025-10-06 03:59:41,619 | INFO     | could have reported an average CPU frequency of 3708 MHz (4 samples)
[2025-10-06 06:00:14] 2025-10-06 03:59:41,620 | INFO     | ..............................
[2025-10-06 06:00:14] 2025-10-06 03:59:41,620 | INFO     | . Timing measurements:
[2025-10-06 06:00:14] 2025-10-06 03:59:41,620 | INFO     | . get job = 0 s
[2025-10-06 06:00:14] 2025-10-06 03:59:41,620 | INFO     | . initial setup = 12 s
[2025-10-06 06:00:14] 2025-10-06 03:59:41,620 | INFO     | . payload setup = 19 s
[2025-10-06 06:00:14] 2025-10-06 03:59:41,620 | INFO     | . stage-in = 0 s
[2025-10-06 06:00:14] 2025-10-06 03:59:41,620 | INFO     | . payload execution = 304 s
[2025-10-06 06:00:14] 2025-10-06 03:59:41,620 | INFO     | . stage-out = 0 s
[2025-10-06 06:00:14] 2025-10-06 03:59:41,620 | INFO     | . log creation = 0 s
[2025-10-06 06:00:14] 2025-10-06 03:59:41,620 | INFO     | ..............................
[2025-10-06 06:00:14] 2025-10-06 03:59:41,620 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-06 06:00:14] 2025-10-06 03:59:41,620 | INFO     | executing command: tail -n 20 /var/lib/boinc-client/slots/7/PanDA_Pilot-6831880650/pilotlog.txt
[2025-10-06 06:00:14] 2025-10-06 03:59:41,633 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-06 06:00:14] - Log from pilotlog.txt -
[2025-10-06 06:00:14] 2025-10-06 03:59:41,618 | INFO     | using path: /var/lib/boinc-client/slots/7/PanDA_Pilot-6831880650/memory_monitor_summary.json (trf name=prmon)
[2025-10-06 06:00:14] 2025-10-06 03:59:41,619 | INFO     | extracted standard info from prmon json
[2025-10-06 06:00:14] 2025-10-06 03:59:41,619 | INFO     | extracted standard memory fields from prmon json
[2025-10-06 06:00:14] 2025-10-06 03:59:41,619 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-06 06:00:14] 2025-10-06 03:59:41,619 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-06 06:00:14] 2025-10-06 03:59:41,619 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-06 06:00:14] 2025-10-06 03:59:41,619 | WARNING  | wrong length of table data, x=[1759722756.0, 1759722817.0, 1759722878.0, 1759722939.0, 1759723000.0], y=[1099.0, 271590.0, 861380.0, 1182968.0, 1903141.0] (must be
[2025-10-06 06:00:14] 2025-10-06 03:59:41,619 | INFO     | could have reported an average CPU frequency of 3708 MHz (4 samples)
[2025-10-06 06:00:14] 2025-10-06 03:59:41,620 | INFO     | ..............................
[2025-10-06 06:00:14] 2025-10-06 03:59:41,620 | INFO     | . Timing measurements:
[2025-10-06 06:00:14] 2025-10-06 03:59:41,620 | INFO     | . get job = 0 s
[2025-10-06 06:00:14] 2025-10-06 03:59:41,620 | INFO     | . initial setup = 12 s
[2025-10-06 06:00:14] 2025-10-06 03:59:41,620 | INFO     | . payload setup = 19 s
[2025-10-06 06:00:14] 2025-10-06 03:59:41,620 | INFO     | . stage-in = 0 s
[2025-10-06 06:00:14] 2025-10-06 03:59:41,620 | INFO     | . payload execution = 304 s
[2025-10-06 06:00:14] 2025-10-06 03:59:41,620 | INFO     | . stage-out = 0 s
[2025-10-06 06:00:14] 2025-10-06 03:59:41,620 | INFO     | . log creation = 0 s
[2025-10-06 06:00:14] 2025-10-06 03:59:41,620 | INFO     | ..............................
[2025-10-06 06:00:14] 2025-10-06 03:59:41,620 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-06 06:00:14] 2025-10-06 03:59:41,620 | INFO     | executing command: tail -n 20 /var/lib/boinc-client/slots/7/PanDA_Pilot-6831880650/pilotlog.txt
[2025-10-06 06:00:14] 2025-10-06 03:59:41,633 | WARNING  | 
[2025-10-06 06:00:14] [begin log extracts]
[2025-10-06 06:00:14] - Log from pilotlog.txt -
[2025-10-06 06:00:14] 2025-10-06 03:59:41,618 | INFO     | using path: /var/lib/boinc-client/slots/7/PanDA_Pilot-6831880650/memory_monitor_summary.json (trf name=prmon)
[2025-10-06 06:00:14] 2025-10-06 03:59:41,619 | INFO     | extracted standard info from prmon json
[2025-10-06 06:00:14] 2025-10-06 03:59:41,619 | INFO     | extracted standard memory fields from prmon json
[2025-10-06 06:00:14] 2025-10-06 03:59:41,619 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-06 06:00:14] 2025-10-06 03:59:41,619 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-06 06:00:14] 2025-10-06 03:59:41,619 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-06 06:00:14] 2025-10-06 03:59:41,619 | WARNING  | wrong length of table data, x=[1759722756.0, 1759722817.0, 1759722878.0, 1759722939.0, 1759723000.0], y=[1099.0, 271590.0, 861380.0, 1182968.0, 1903141.0] (must be
[2025-10-06 06:00:14] 2025-10-06 03:59:41,619 | INFO     | could have reported an average CPU frequency of 3708 MHz (4 samples)
[2025-10-06 06:00:14] 2025-10-06 03:59:41,620 | INFO     | ..............................
[2025-10-06 06:00:14] 2025-10-06 03:59:41,620 | INFO     | . Timing measurements:
[2025-10-06 06:00:14] 2025-10-06 03:59:41,620 | INFO     | . get job = 0 s
[2025-10-06 06:00:14] 2025-10-06 03:59:41,620 | INFO     | . initial setup = 12 s
[2025-10-06 06:00:14] 2025-10-06 03:59:41,620 | INFO     | . payload setup = 19 s
[2025-10-06 06:00:14] 2025-10-06 03:59:41,620 | INFO     | . stage-in = 0 s
[2025-10-06 06:00:14] 2025-10-06 03:59:41,620 | INFO     | . payload execution = 304 s
[2025-10-06 06:00:14] 2025-10-06 03:59:41,620 | INFO     | . stage-out = 0 s
[2025-10-06 06:00:14] 2025-10-06 03:59:41,620 | INFO     | . log creation = 0 s
[2025-10-06 06:00:14] 2025-10-06 03:59:41,620 | INFO     | ..............................
[2025-10-06 06:00:14] 2025-10-06 03:59:41,620 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-06 06:00:14] 2025-10-06 03:59:41,620 | INFO     | executing command: tail -n 20 /var/lib/boinc-client/slots/7/PanDA_Pilot-6831880650/pilotlog.txt
[2025-10-06 06:00:14] [end log extracts]
[2025-10-06 06:00:14] 2025-10-06 03:59:41,633 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-06 06:00:14] 2025-10-06 03:59:41,634 | WARNING  | pilotErrorDiags = ["Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a 
[2025-10-06 06:00:14] 2025-10-06 03:59:41,681 | INFO     | 
[2025-10-06 06:00:14] 2025-10-06 03:59:41,681 | INFO     | job summary report
[2025-10-06 06:00:14] 2025-10-06 03:59:41,681 | INFO     | --------------------------------------------------
[2025-10-06 06:00:14] 2025-10-06 03:59:41,681 | INFO     | PanDA job id: 6831880650
[2025-10-06 06:00:14] 2025-10-06 03:59:41,681 | INFO     | task id: 46376905
[2025-10-06 06:00:14] 2025-10-06 03:59:41,681 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-06 05:57:33,727 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-06 06:00:14] 2025-10-06 03:59:41,681 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-06 06:00:14] 2025-10-06 03:59:41,681 | INFO     | pilot state: failed 
[2025-10-06 06:00:14] 2025-10-06 03:59:41,681 | INFO     | transexitcode: 65
[2025-10-06 06:00:14] 2025-10-06 03:59:41,681 | INFO     | exeerrorcode: 65
[2025-10-06 06:00:14] 2025-10-06 03:59:41,681 | INFO     | exeerrordiag: EVNTtoHITS got a SIGTRAP signal (exit code 133); G4 exception at line 1695 (see jobReport for further details); Possible memory leak: 'pss' slope: 81
[2025-10-06 06:00:14] 2025-10-06 03:59:41,681 | INFO     | exitcode: 65
[2025-10-06 06:00:14] 2025-10-06 03:59:41,681 | INFO     | exitmsg: EVNTtoHITS got a SIGTRAP signal (exit code 133); G4 exception at line 1695 (see jobReport for further details); Possible memory leak: 'pss' slope: 8161.26
[2025-10-06 06:00:14] 2025-10-06 03:59:41,681 | INFO     | cpuconsumptiontime: 63 s
[2025-10-06 06:00:14] 2025-10-06 03:59:41,681 | INFO     | nevents: 0
[2025-10-06 06:00:14] 2025-10-06 03:59:41,681 | INFO     | neventsw: 0
[2025-10-06 06:00:14] 2025-10-06 03:59:41,681 | INFO     | pid: 2897423
[2025-10-06 06:00:14] 2025-10-06 03:59:41,681 | INFO     | pgrp: 2897423
[2025-10-06 06:00:14] 2025-10-06 03:59:41,681 | INFO     | corecount: 4
[2025-10-06 06:00:14] 2025-10-06 03:59:41,681 | INFO     | event service: False
[2025-10-06 06:00:14] 2025-10-06 03:59:41,681 | INFO     | sizes: {0: 2348821, 3: 2349083, 11: 2349111, 328: 2379292, 331: 2379292, 449: 2379486}
[2025-10-06 06:00:14] 2025-10-06 03:59:41,681 | INFO     | --------------------------------------------------
[2025-10-06 06:00:14] 2025-10-06 03:59:41,681 | INFO     | 
[2025-10-06 06:00:14] 2025-10-06 03:59:41,682 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/7
[2025-10-06 06:00:14] 2025-10-06 03:59:41,699 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-06 06:00:14] 2025-10-06 03:59:41,699 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-06 06:00:14] 2025-10-06 03:59:41,699 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-06 06:00:14] 2025-10-06 03:59:41,699 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-06 06:00:14] 2025-10-06 03:59:41,699 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-06 06:00:14] 2025-10-06 03:59:41,699 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-06 06:00:14] 2025-10-06 03:59:41,699 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-06 06:00:14] 2025-10-06 03:59:41,699 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-06 06:00:14] 2025-10-06 03:59:41,699 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-06 06:00:14] 2025-10-06 03:59:41,699 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-06 06:00:14] 2025-10-06 03:59:41,699 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-06 06:00:14] 2025-10-06 03:59:41,699 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-06 06:00:14] 2025-10-06 03:59:41,699 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-06 06:00:14] 2025-10-06 03:59:41,699 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-06 06:00:14] 2025-10-06 03:59:41,699 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-06 06:00:14] 2025-10-06 03:59:41,699 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-06 06:00:14] 2025-10-06 03:59:41,699 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-06 06:00:14] 2025-10-06 03:59:41,700 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-06 06:00:14] 2025-10-06 03:59:41,700 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-06 06:00:14] 2025-10-06 03:59:41,700 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-06 06:00:14] 2025-10-06 03:59:41,700 | INFO     | job 6831880650 has completed (purged errors)
[2025-10-06 06:00:14] 2025-10-06 03:59:41,700 | INFO     | overall cleanup function is called
[2025-10-06 06:00:14] 2025-10-06 03:59:42,706 | INFO     | --- collectZombieJob: --- 10, [2897423]
[2025-10-06 06:00:14] 2025-10-06 03:59:42,706 | INFO     | zombie collector waiting for pid 2897423
[2025-10-06 06:00:14] 2025-10-06 03:59:42,706 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-06 06:00:14] 2025-10-06 03:59:42,706 | INFO     | collected zombie processes
[2025-10-06 06:00:14] 2025-10-06 03:59:42,706 | INFO     | will attempt to kill all subprocesses of pid=2897423
[2025-10-06 06:00:14] 2025-10-06 03:59:42,772 | INFO     | process IDs to be killed: [2897423] (in reverse order)
[2025-10-06 06:00:14] 2025-10-06 03:59:42,808 | WARNING  | found no corresponding commands to process id(s)
[2025-10-06 06:00:14] 2025-10-06 03:59:42,809 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-06 06:00:14] 2025-10-06 03:59:42,811 | INFO     | did not find any defunct processes belonging to 2897423
[2025-10-06 06:00:14] 2025-10-06 03:59:42,813 | INFO     | did not find any defunct processes belonging to 2897423
[2025-10-06 06:00:14] 2025-10-06 03:59:42,813 | INFO     | ready for new job
[2025-10-06 06:00:14] 2025-10-06 03:59:42,813 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-06 06:00:14] 2025-10-06 03:59:42,814 | INFO     | ***************************************
[2025-10-06 06:00:14] 2025-10-06 03:59:42,814 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-06 06:00:14] 2025-10-06 03:59:42,814 | INFO     | ***************************************
[2025-10-06 06:00:14] 2025-10-06 03:59:42,814 | INFO     | 
[2025-10-06 06:00:14] 2025-10-06 03:59:42,815 | INFO     | architecture information:
[2025-10-06 06:00:14] 2025-10-06 03:59:42,815 | INFO     | executing command: cat /etc/os-release
[2025-10-06 06:00:14] 2025-10-06 03:59:42,826 | INFO     | cat /etc/os-release:
[2025-10-06 06:00:14] NAME="CentOS Linux"
[2025-10-06 06:00:14] VERSION="7 (Core)"
[2025-10-06 06:00:14] ID="centos"
[2025-10-06 06:00:14] ID_LIKE="rhel fedora"
[2025-10-06 06:00:14] VERSION_ID="7"
[2025-10-06 06:00:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-06 06:00:14] ANSI_COLOR="0;31"
[2025-10-06 06:00:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-06 06:00:14] HOME_URL="https://www.centos.org/"
[2025-10-06 06:00:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-06 06:00:14] 
[2025-10-06 06:00:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-06 06:00:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-06 06:00:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-06 06:00:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-06 06:00:14] 
[2025-10-06 06:00:14] 2025-10-06 03:59:42,826 | INFO     | ***************************************
[2025-10-06 06:00:14] 2025-10-06 03:59:43,327 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/7
[2025-10-06 06:00:14] 2025-10-06 03:59:43,341 | INFO     | sufficient remaining disk space (3175549501440 B)
[2025-10-06 06:00:14] 2025-10-06 03:59:43,341 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-06 06:00:14] 2025-10-06 03:59:43,341 | INFO     | current server update state: UPDATING_FINAL
[2025-10-06 06:00:14] 2025-10-06 03:59:43,341 | INFO     | update_server=False
[2025-10-06 06:00:14] 2025-10-06 03:59:43,341 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-06 06:00:14] 2025-10-06 03:59:43,341 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-06 06:00:14] 2025-10-06 03:59:43,341 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-06 06:00:14] 2025-10-06 03:59:43,341 | INFO     | aborting loop
[2025-10-06 06:00:14] 2025-10-06 03:59:43,727 | INFO     | all data control threads have been joined
[2025-10-06 06:00:14] 2025-10-06 03:59:44,068 | INFO     | all payload control threads have been joined
[2025-10-06 06:00:14] 2025-10-06 03:59:44,101 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-06 06:00:14] 2025-10-06 03:59:44,346 | INFO     | [job] retrieve thread has finished
[2025-10-06 06:00:14] 2025-10-06 03:59:44,346 | INFO     | [job] queue monitor thread has finished
[2025-10-06 06:00:14] 2025-10-06 03:59:44,347 | INFO     | [job] job monitor thread has finished
[2025-10-06 06:00:14] 2025-10-06 03:59:44,469 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-06 06:00:14] 2025-10-06 03:59:44,479 | INFO     | [payload] execute_payloads thread has finished
[2025-10-06 06:00:14] 2025-10-06 03:59:44,732 | INFO     | [data] control thread has finished
[2025-10-06 06:00:14] 2025-10-06 03:59:44,747 | INFO     | [payload] failed_post thread has finished
[2025-10-06 06:00:14] 2025-10-06 03:59:44,771 | INFO     | all job control threads have been joined
[2025-10-06 06:00:14] 2025-10-06 03:59:44,842 | INFO     | [payload] validate_post thread has finished
[2025-10-06 06:00:14] 2025-10-06 03:59:45,023 | INFO     | [data] copytool_in thread has finished
[2025-10-06 06:00:14] 2025-10-06 03:59:45,074 | INFO     | [payload] control thread has finished
[2025-10-06 06:00:14] 2025-10-06 03:59:45,116 | INFO     | [job] validate thread has finished
[2025-10-06 06:00:14] 2025-10-06 03:59:45,244 | INFO     | [job] create_data_payload thread has finished
[2025-10-06 06:00:14] 2025-10-06 03:59:45,340 | INFO     | [payload] validate_pre thread has finished
[2025-10-06 06:00:14] 2025-10-06 03:59:45,776 | INFO     | [job] control thread has finished
[2025-10-06 06:00:14] 2025-10-06 03:59:46,107 | INFO     | [data] copytool_out thread has finished
[2025-10-06 06:00:14] 2025-10-06 03:59:46,800 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-06 06:00:14] 2025-10-06 03:59:50,805 | INFO     | [data] queue_monitor thread has finished
[2025-10-06 06:00:14] 2025-10-06 03:59:59,682 | INFO     | [monitor] cgroup control has ended
[2025-10-06 06:00:14] 2025-10-06 04:00:00,228 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 129610162452288)>', '<ExcThread(monitor, started 129609842530048)>']
[2025-10-06 06:00:14] 2025-10-06 04:00:05,251 | INFO     | all workflow threads have been joined
[2025-10-06 06:00:14] 2025-10-06 04:00:05,251 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-06 06:00:14] 2025-10-06 04:00:05,251 | INFO     | traces error code: 0
[2025-10-06 06:00:14] 2025-10-06 04:00:05,251 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-06 06:00:14] 2025-10-06 04:00:14,172 | INFO     | PID=2886439 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-06 06:00:14] 2025-10-06 04:00:14,173 | INFO     | .. there are 2 such processes running
[2025-10-06 06:00:14] 2025-10-06 04:00:14,173 | INFO     | found 0 job(s) in 20 queues
[2025-10-06 06:00:14] 2025-10-06 04:00:14,173 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-06 06:00:14] 2025-10-06 04:00:14,173 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-06 06:00:14] 2025-10-06 04:00:14,173 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-06 06:00:14] 2025-10-06 04:00:14,173 | INFO     | [monitor] control thread has ended
[2025-10-06 06:00:14] 2025-10-06 04:00:14,297 [wrapper] ==== pilot stdout END ====
[2025-10-06 06:00:14] 2025-10-06 04:00:14,299 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-06 06:00:14] 2025-10-06 04:00:14,301 [wrapper] pilotpid: 2886439
[2025-10-06 06:00:14] 2025-10-06 04:00:14,302 [wrapper] Pilot exit status: 0
[2025-10-06 06:00:14] 2025-10-06 04:00:14,308 [wrapper] pandaids: 6831880650
[2025-10-06 06:00:14] 2025-10-06 04:00:14,329 [wrapper] cleanup supervisor_pilot 2886445 2886440
[2025-10-06 06:00:14] 2025-10-06 04:00:14,330 [wrapper] Test setup, not cleaning
[2025-10-06 06:00:14] 2025-10-06 04:00:14,332 [wrapper] apfmon messages muted
[2025-10-06 06:00:14] 2025-10-06 04:00:14,333 [wrapper] ==== wrapper stdout END ====
[2025-10-06 06:00:14] 2025-10-06 04:00:14,335 [wrapper] ==== wrapper stderr END ====
[2025-10-06 06:00:14]  *** Error codes and diagnostics ***
[2025-10-06 06:00:14]     "exeErrorCode": 65,
[2025-10-06 06:00:14]     "exeErrorDiag": "EVNTtoHITS got a SIGTRAP signal (exit code 133); G4 exception at line 1695 (see jobReport for further details); Possible memory leak: 'pss' slope: 8161.26 KB/s",
[2025-10-06 06:00:14]     "pilotErrorCode": 1305,
[2025-10-06 06:00:14]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGTRAP signal (exit code 133); G4 exception at line 1695 (see jobReport for further details); Possible memory leak: 'pss' slope: 8161.26 KB/s",
[2025-10-06 06:00:14]  *** Listing of results directory ***
[2025-10-06 06:00:14] insgesamt 216568
[2025-10-06 06:00:14] -rw-r--r-- 1 boinc boinc    552446 Okt  5 20:48 pilot3.tar.gz
[2025-10-06 06:00:14] -rw-r--r-- 1 boinc boinc      5112 Okt  5 20:59 queuedata.json
[2025-10-06 06:00:14] -rwx------ 1 boinc boinc     36292 Okt  5 21:00 runpilot2-wrapper.sh
[2025-10-06 06:00:14] -rw-r--r-- 1 boinc boinc       100 Okt  6 05:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-06 06:00:14] -rwxr-xr-x 1 boinc boinc      7986 Okt  6 05:51 run_atlas
[2025-10-06 06:00:14] -rw-r--r-- 1 boinc boinc       105 Okt  6 05:51 job.xml
[2025-10-06 06:00:14] -rw-r--r-- 2 boinc boinc 217507430 Okt  6 05:51 EVNT.46376901._003433.pool.root.1
[2025-10-06 06:00:14] -rw-r--r-- 2 boinc boinc    565602 Okt  6 05:51 input.tar.gz
[2025-10-06 06:00:14] -rw-r--r-- 2 boinc boinc     15120 Okt  6 05:51 start_atlas.sh
[2025-10-06 06:00:14] drwxrwx--x 2 boinc boinc      4096 Okt  6 05:51 shared
[2025-10-06 06:00:14] -rw-r--r-- 1 boinc boinc         0 Okt  6 05:51 boinc_setup_complete
[2025-10-06 06:00:14] -rw-r--r-- 1 boinc boinc      8873 Okt  6 05:51 init_data.xml
[2025-10-06 06:00:14] -rw-r--r-- 1 boinc boinc         0 Okt  6 05:51 boinc_lockfile
[2025-10-06 06:00:14] -rw-r--r-- 1 boinc boinc      2518 Okt  6 05:51 pandaJob.out
[2025-10-06 06:00:14] -rw------- 1 boinc boinc    974168 Okt  6 05:51 agis_schedconf.cvmfs.json
[2025-10-06 06:00:14] -rw------- 1 boinc boinc   1560401 Okt  6 05:51 agis_ddmendpoints.agis.ALL.json
[2025-10-06 06:00:14] drwx------ 4 boinc boinc      4096 Okt  6 05:51 pilot3
[2025-10-06 06:00:14] -rw------- 1 boinc boinc      1008 Okt  6 05:57 memory_monitor_summary.json
[2025-10-06 06:00:14] -rw------- 1 boinc boinc     65940 Okt  6 05:57 log.46376905._093193.job.log.tgz.1
[2025-10-06 06:00:14] -rw-r--r-- 1 boinc boinc       525 Okt  6 05:57 boinc_task_state.xml
[2025-10-06 06:00:14] -rw------- 1 boinc boinc      9823 Okt  6 05:59 heartbeat.json
[2025-10-06 06:00:14] -rw-r--r-- 1 boinc boinc      8192 Okt  6 05:59 boinc_mmap_file
[2025-10-06 06:00:14] -rw-r--r-- 1 boinc boinc        23 Okt  6 05:59 wrapper_checkpoint.txt
[2025-10-06 06:00:14] -rw------- 1 boinc boinc       822 Okt  6 06:00 pilotlog.txt
[2025-10-06 06:00:14] -rw------- 1 boinc boinc        95 Okt  6 06:00 pilot_heartbeat.json
[2025-10-06 06:00:14] -rw------- 1 boinc boinc    121646 Okt  6 06:00 log.46376905._093193.job.log.1
[2025-10-06 06:00:14] -rw------- 1 boinc boinc       188 Okt  6 06:00 output.list
[2025-10-06 06:00:14] -rw-r--r-- 1 boinc boinc       620 Okt  6 06:00 runtime_log
[2025-10-06 06:00:14] -rw------- 1 boinc boinc    204800 Okt  6 06:00 result.tar.gz
[2025-10-06 06:00:14] -rw-r--r-- 1 boinc boinc      8578 Okt  6 06:00 runtime_log.err
[2025-10-06 06:00:14] -rw------- 1 boinc boinc       627 Okt  6 06:00 pniNDmc9iP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmLiQNDmRn150n.diag
[2025-10-06 06:00:14] -rw-r--r-- 1 boinc boinc     22608 Okt  6 06:00 stderr.txt
[2025-10-06 06:00:14] No HITS result produced
[2025-10-06 06:00:14]  *** Contents of shared directory: ***
[2025-10-06 06:00:14] insgesamt 213188
[2025-10-06 06:00:14] -rw-r--r-- 2 boinc boinc 217507430 Okt  6 05:51 ATLAS.root_0
[2025-10-06 06:00:14] -rw-r--r-- 2 boinc boinc    565602 Okt  6 05:51 input.tar.gz
[2025-10-06 06:00:14] -rw-r--r-- 2 boinc boinc     15120 Okt  6 05:51 start_atlas.sh
[2025-10-06 06:00:14] -rw------- 1 boinc boinc    204800 Okt  6 06:00 result.tar.gz
06:00:16 (2882638): run_atlas exited; CPU time 61.093031
06:00:16 (2882638): called boinc_finish(0)

</stderr_txt>
]]>

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