Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-06 08:55:50 (2265): vboxwrapper version 26210
2025-10-06 08:55:50 (2265): BOINC client version: 8.2.5
2025-10-06 08:55:51 (2265): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2025-10-06 08:55:51 (2265): Detected: Sandbox Configuration Enabled
2025-10-06 08:55:51 (2265): Successfully copied 'init_data.xml' to the shared directory.
2025-10-06 08:55:51 (2265): Create VM. (boinc_e5045f6fe0504e74, slot#0)
2025-10-06 08:55:51 (2265): Setting Memory Size for VM. (4400MB)
2025-10-06 08:55:51 (2265): Setting CPU Count for VM. (4)
2025-10-06 08:55:51 (2265): Setting Chipset Options for VM.
2025-10-06 08:55:51 (2265): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-06 08:55:51 (2265): Setting Boot Options for VM.
2025-10-06 08:55:52 (2265): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-06 08:55:52 (2265): Enabling VM Network Access.
2025-10-06 08:55:52 (2265): Disabling USB Support for VM.
2025-10-06 08:55:52 (2265): Disabling COM Port Support for VM.
2025-10-06 08:55:52 (2265): Disabling Audio Support for VM.
2025-10-06 08:55:52 (2265): Disabling Clipboard Support for VM.
2025-10-06 08:55:52 (2265): Disabling Drag and Drop Support for VM.
2025-10-06 08:55:52 (2265): Adding storage controller(s) to VM.
2025-10-06 08:55:52 (2265): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-06 08:55:52 (2265): Adding VirtualBox Guest Additions to VM.
2025-10-06 08:55:53 (2265): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-06 08:55:53 (2265): forwarding host port 49766 to guest port 80
2025-10-06 08:55:53 (2265): Enabling remote desktop for VM.
2025-10-06 08:55:53 (2265): Required extension pack not installed, remote desktop not enabled.
2025-10-06 08:55:53 (2265): Enabling shared directory for VM.
2025-10-06 08:55:53 (2265): Starting VM using VBoxManage interface. (boinc_e5045f6fe0504e74, slot#0)
2025-10-06 08:55:59 (2265): Successfully started VM. (PID = '2338')
2025-10-06 08:55:59 (2265): Reporting VM Process ID to BOINC.
2025-10-06 08:55:59 (2265): Guest Log: BIOS: VirtualBox 7.1.8
2025-10-06 08:55:59 (2265): Guest Log: CPUID EDX: 0x178bfbff
2025-10-06 08:55:59 (2265): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-06 08:55:59 (2265): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-06 08:55:59 (2265): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-06 08:55:59 (2265): Detected: Web Application Enabled (http://localhost:49766)
2025-10-06 08:55:59 (2265): Preference change detected
2025-10-06 08:55:59 (2265): Setting CPU throttle for VM. (100%)
2025-10-06 08:55:59 (2265): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-06 08:56:01 (2265): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-06 08:56:01 (2265): Guest Log: BIOS: Booting from Hard Disk...
2025-10-06 08:56:05 (2265): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-06 08:56:05 (2265): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-06 08:56:05 (2265): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-06 08:56:05 (2265): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-06 08:56:05 (2265): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-06 08:56:05 (2265): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-06 08:56:05 (2265): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-06 08:56:05 (2265): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-06 08:56:05 (2265): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-06 08:56:05 (2265): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-06 08:56:05 (2265): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-06 08:56:05 (2265): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-06 08:56:05 (2265): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-06 08:56:05 (2265): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-06 08:56:05 (2265): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-06 08:56:05 (2265): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-06 08:56:05 (2265): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-06 08:56:05 (2265): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-06 08:56:05 (2265): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-06 08:56:05 (2265): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-06 08:56:05 (2265): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-06 08:56:05 (2265): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-06 08:56:05 (2265): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-06 08:56:05 (2265): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-06 08:56:05 (2265): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-06 08:56:05 (2265): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-06 08:56:05 (2265): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-06 08:56:05 (2265): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-06 08:56:05 (2265): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-06 08:56:05 (2265): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-06 08:56:05 (2265): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-06 08:56:05 (2265): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-06 08:56:11 (2265): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-06 08:56:11 (2265): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-06 08:56:20 (2265): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-06 08:56:20 (2265): Guest Log: 00:00:00.000162 main     Log opened 2025-10-06T06:56:18.379938000Z
2025-10-06 08:56:20 (2265): Guest Log: 00:00:00.000300 main     OS Product: Linux
2025-10-06 08:56:20 (2265): Guest Log: 00:00:00.000352 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-06 08:56:20 (2265): Guest Log: 00:00:00.000395 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-06 08:56:20 (2265): Guest Log: 00:00:00.000470 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-06 08:56:20 (2265): Guest Log: 00:00:00.000472 main     Process ID: 1305
2025-10-06 08:56:20 (2265): Guest Log: 00:00:00.000472 main     Package type: LINUX_64BITS_GENERIC
2025-10-06 08:56:20 (2265): Guest Log: 00:00:00.002481 main     5.2.32 r132073 started. Verbose level = 0
2025-10-06 08:56:35 (2265): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-06 08:56:35 (2265): Guest Log: [INFO] Mounting shared directory
2025-10-06 08:56:36 (2265): Guest Log: [INFO] Checking for init_data.xml
2025-10-06 08:57:22 (2265): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-06 08:57:22 (2265): Guest Log: [INFO] Detected branch: prod
2025-10-06 08:57:27 (2265): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-06 08:57:27 (2265): Guest Log: Copying input files
2025-10-06 08:57:30 (2265): Guest Log: Copied input files into RunAtlas.
2025-10-06 08:57:30 (2265): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-06 08:57:30 (2265): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-06 08:57:30 (2265): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-06 08:57:30 (2265): Guest Log: Further information can be found at the LHC@home message board.
2025-10-06 08:58:19 (2265): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-06 08:58:25 (2265): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-06 08:58:25 (2265): Guest Log: 2.6.3.0 1607 1 32204 151390 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-06 08:58:26 (2265): Guest Log: copied the webapp to /var/www
2025-10-06 08:58:26 (2265): Guest Log: ATHENA_PROC_NUMBER=4
2025-10-06 08:58:26 (2265): Guest Log: ATHENA_CORE_NUMBER=4
2025-10-06 08:58:32 (2265): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-06 08:58:32 (2265): Guest Log:  *** Starting ATLAS job. (PandaID=6831880016 taskID=46376905) ***
2025-10-06 09:19:01 (2265): VM state change detected. (old = 'running', new = 'paused')
2025-10-06 09:22:01 (2265): VM state change detected. (old = 'paused', new = 'running')
2025-10-06 09:45:46 (2265): VM state change detected. (old = 'running', new = 'paused')
2025-10-06 11:27:23 (2265): VM state change detected. (old = 'paused', new = 'running')
2025-10-06 11:27:30 (2265): Guest Log: 00:46:32.324423 timesync vgsvcTimeSyncWorker: Radical host time change: 6 097 143 000 000ns (HostNow=1 759 742 818 686 000 000 ns HostLast=1 759 736 721 543 000 000 ns)
2025-10-06 11:27:40 (2265): Guest Log: 00:46:42.366254 timesync vgsvcTimeSyncWorker: Radical guest time change: 6 258 036 225 000ns (GuestNow=1 759 742 828 733 711 000 ns GuestLast=1 759 736 570 697 486 000 ns fSetTimeLastLoop=true )
2025-10-06 11:35:52 (2265): VM state change detected. (old = 'running', new = 'paused')
2025-10-06 12:28:38 (2265): VM state change detected. (old = 'paused', new = 'running')
2025-10-06 12:28:48 (2265): Guest Log: 00:55:04.113145 timesync vgsvcTimeSyncWorker: Radical host time change: 3 166 741 000 000ns (HostNow=1 759 746 486 787 000 000 ns HostLast=1 759 743 320 046 000 000 ns)
2025-10-06 12:28:58 (2265): Guest Log: 00:55:14.182553 timesync vgsvcTimeSyncWorker: Radical guest time change: 3 166 376 254 000ns (GuestNow=1 759 746 496 856 646 000 ns GuestLast=1 759 743 330 480 392 000 ns fSetTimeLastLoop=true )
2025-10-06 12:29:32 (2265): Preference change detected
2025-10-06 12:29:32 (2265): Setting CPU throttle for VM. (100%)
2025-10-06 12:29:32 (2265): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-06 13:13:25 (2265): Status Report: Elapsed Time: '6000.000000'
2025-10-06 13:13:25 (2265): Status Report: CPU Time: '21058.830000'
2025-10-06 13:57:45 (2265): Guest Log:  *** Job finished ***
2025-10-06 13:57:45 (2265): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-06 13:57:45 (2265): Guest Log: 2025-10-06 11:56:41,320 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-06 13:57:45 (2265): Guest Log: 2025-10-06 11:56:41,320 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-06 13:57:45 (2265): Guest Log: 2025-10-06 11:56:55,986 | INFO     | [monitor] cgroup control has ended
2025-10-06 13:57:45 (2265): Guest Log: 2025-10-06 11:56:57,563 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139811396872000)>', '<ExcThread(monitor, started 139810815588096)>']
2025-10-06 13:57:45 (2265): Guest Log: 2025-10-06 11:56:58,390 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-06 13:57:45 (2265): Guest Log: 2025-10-06 11:56:58,390 | INFO     | [monitor] control thread has ended
2025-10-06 13:57:45 (2265): Guest Log: 2025-10-06 11:57:02,569 | INFO     | all workflow threads have been joined
2025-10-06 13:57:45 (2265): Guest Log: 2025-10-06 11:57:02,569 | INFO     | end of generic workflow (traces error code: 0)
2025-10-06 13:57:45 (2265): Guest Log: 2025-10-06 11:57:02,570 | INFO     | traces error code: 0
2025-10-06 13:57:45 (2265): Guest Log: 2025-10-06 11:57:02,570 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-06 13:57:45 (2265): Guest Log: 2025-10-06 11:57:02,671 [wrapper] ==== pilot stdout END ====
2025-10-06 13:57:45 (2265): Guest Log: 2025-10-06 11:57:02,679 [wrapper] ==== wrapper stdout RESUME ====
2025-10-06 13:57:45 (2265): Guest Log: 2025-10-06 11:57:02,689 [wrapper] pilotpid: 6066
2025-10-06 13:57:45 (2265): Guest Log: 2025-10-06 11:57:02,697 [wrapper] Pilot exit status: 0
2025-10-06 13:57:45 (2265): Guest Log: 2025-10-06 11:57:02,809 [wrapper] pandaids: 6831880016
2025-10-06 13:57:45 (2265): Guest Log: 2025-10-06 11:57:02,877 [wrapper] cleanup supervisor_pilot  3478 6067
2025-10-06 13:57:45 (2265): Guest Log: 2025-10-06 11:57:02,888 [wrapper] Test setup, not cleaning
2025-10-06 13:57:45 (2265): Guest Log: 2025-10-06 11:57:02,897 [wrapper] apfmon messages muted
2025-10-06 13:57:45 (2265): Guest Log: 2025-10-06 11:57:02,906 [wrapper] ==== wrapper stdout END ====
2025-10-06 13:57:45 (2265): Guest Log: 2025-10-06 11:57:02,916 [wrapper] ==== wrapper stderr END ====
2025-10-06 13:57:45 (2265): Guest Log:  *** Error codes and diagnostics ***
2025-10-06 13:57:45 (2265): Guest Log:     "exeErrorCode": 0,
2025-10-06 13:57:45 (2265): Guest Log:     "exeErrorDiag": "",
2025-10-06 13:57:45 (2265): Guest Log:     "pilotErrorCode": 0,
2025-10-06 13:57:45 (2265): Guest Log:     "pilotErrorDiag": "",
2025-10-06 13:57:45 (2265): Guest Log:  *** Listing of results directory ***
2025-10-06 13:57:46 (2265): Guest Log: total 174492
2025-10-06 13:57:46 (2265): Guest Log: -rwx------. 1 atlas atlas     36292 Oct  5 18:46 runpilot2-wrapper.sh
2025-10-06 13:57:46 (2265): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct  5 18:46 queuedata.json
2025-10-06 13:57:46 (2265): Guest Log: -rw-r--r--. 1 atlas atlas    552446 Oct  5 18:46 pilot3.tar.gz
2025-10-06 13:57:46 (2265): Guest Log: -rw-r-----. 1 atlas atlas     15120 Oct  6 06:57 start_atlas.sh
2025-10-06 13:57:46 (2265): Guest Log: -rw-r-----. 1 atlas atlas    565590 Oct  6 06:57 input.tar.gz
2025-10-06 13:57:46 (2265): Guest Log: -rw-r--r--. 1 atlas atlas      7569 Oct  6 06:57 init_data.xml
2025-10-06 13:57:46 (2265): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct  6 06:57 EVNT.46376901._003422.pool.root.1 -> /data/./ATLAS.root_0
2025-10-06 13:57:46 (2265): Guest Log: -rw-r--r--. 1 atlas atlas      2519 Oct  6 06:58 pandaJob.out
2025-10-06 13:57:46 (2265): Guest Log: -rw-------. 1 atlas atlas    971494 Oct  6 07:01 agis_schedconf.cvmfs.json
2025-10-06 13:57:46 (2265): Guest Log: drwx------. 4 atlas atlas      4096 Oct  6 07:01 pilot3
2025-10-06 13:57:46 (2265): Guest Log: -rw-------. 1 atlas atlas 172538256 Oct  6 11:53 HITS.46376905._092919.pool.root.1
2025-10-06 13:57:46 (2265): Guest Log: -rw-------. 1 atlas atlas      1034 Oct  6 11:53 memory_monitor_summary.json
2025-10-06 13:57:46 (2265): Guest Log: -rw-------. 1 atlas atlas   1560401 Oct  6 11:54 agis_ddmendpoints.agis.ALL.json
2025-10-06 13:57:46 (2265): Guest Log: -rw-------. 1 atlas atlas    281274 Oct  6 11:54 log.46376905._092919.job.log.tgz.1
2025-10-06 13:57:46 (2265): Guest Log: -rw-------. 1 atlas atlas        97 Oct  6 11:55 pilot_heartbeat.json
2025-10-06 13:57:46 (2265): Guest Log: -rw-------. 1 atlas atlas      7800 Oct  6 11:56 heartbeat.json
2025-10-06 13:57:46 (2265): Guest Log: -rw-------. 1 atlas atlas      4805 Oct  6 11:57 pilotlog.txt
2025-10-06 13:57:46 (2265): Guest Log: -rw-------. 1 atlas atlas    883245 Oct  6 11:57 log.46376905._092919.job.log.1
2025-10-06 13:57:46 (2265): Guest Log: -rw-------. 1 atlas atlas       357 Oct  6 11:57 output.list
2025-10-06 13:57:46 (2265): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct  6 11:57 runtime_log
2025-10-06 13:57:46 (2265): Guest Log: -rw-------. 1 atlas atlas   1187840 Oct  6 11:57 result.tar.gz
2025-10-06 13:57:46 (2265): Guest Log: -rw-r--r--. 1 atlas atlas      8705 Oct  6 11:57 runtime_log.err
2025-10-06 13:57:46 (2265): Guest Log: -rw-------. 1 atlas atlas       682 Oct  6 11:57 qEZLDmwviP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmnfQNDmPctsdn.diag
2025-10-06 13:57:46 (2265): Guest Log: Looking for outputfile HITS.46376905._092919.pool.root.1
2025-10-06 13:57:46 (2265): Guest Log: HITS file was successfully produced
2025-10-06 13:57:46 (2265): Guest Log: -rw-------. 1 atlas atlas 172538256 Oct  6 11:53 /home/atlas/RunAtlas/HITS.46376905._092919.pool.root.1
2025-10-06 13:57:46 (2265): Guest Log: Successfully finished the ATLAS job!
2025-10-06 13:57:46 (2265): Guest Log: Copying the results back to the shared directory!
2025-10-06 13:57:46 (2265): Guest Log:  *** Contents of shared directory: ***
2025-10-06 13:57:46 (2265): Guest Log: total 213272
2025-10-06 13:57:46 (2265): Guest Log: -rw-rw----. 1 root root 216608370 Oct  6 06:55 ATLAS.root_0
2025-10-06 13:57:46 (2265): Guest Log: -rw-rw-r--. 1 root root      7569 Oct  6 06:55 init_data.xml
2025-10-06 13:57:46 (2265): Guest Log: -rw-rw----. 1 root root    565590 Oct  6 06:55 input.tar.gz
2025-10-06 13:57:46 (2265): Guest Log: -rw-r--r--. 1 root root   1187840 Oct  6  2025 result.tar.gz
2025-10-06 13:57:46 (2265): Guest Log: -rw-rw----. 1 root root     15120 Oct  6 06:55 start_atlas.sh
2025-10-06 13:57:46 (2265): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-06 13:57:46 (2265): VM Completion File Detected.
2025-10-06 13:57:46 (2265): Powering off VM.
2025-10-06 13:57:46 (2265): Successfully stopped VM.
2025-10-06 13:57:46 (2265): Deregistering VM. (boinc_e5045f6fe0504e74, slot#0)
2025-10-06 13:57:46 (2265): Removing network bandwidth throttle group from VM.
2025-10-06 13:57:47 (2265): Removing VM from VirtualBox.
2025-10-06 13:57:52 (2265): called boinc_finish(0)

</stderr_txt>
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