Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:54:53 (3083337): wrapper (7.7.26015): starting
15:54:53 (3083337): wrapper: running run_atlas (--nthreads 8)
[2025-10-05 15:54:53] Arguments: --nthreads 8
[2025-10-05 15:54:53] Threads: 8
[2025-10-05 15:54:53] Checking for CVMFS
[2025-10-05 15:54:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-05 15:54:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-05 15:54:54] Running cvmfs_config stat atlas.cern.ch
[2025-10-05 15:54:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-05 15:54:54] 2.13.2.0 784684 99067 263228 151373 2 432 39724988 40960000 15558 16776704 1 277395774 99.740 192108747 36189 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-05 15:54:54] CVMFS is ok
[2025-10-05 15:54:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-05 15:54:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-05 15:54:54] Further information can be found at the LHC@home message board.
[2025-10-05 15:54:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-05 15:54:54] Checking for apptainer binary...
[2025-10-05 15:54:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-05 15:54:54] Running /usr/bin/apptainer --version
[2025-10-05 15:54:54] apptainer version 1.4.2-1.el9
[2025-10-05 15:54:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-05 15:54:54] c-212-2.aglt2.org
[2025-10-05 15:54:54] apptainer works
[2025-10-05 15:54:54] Set ATHENA_PROC_NUMBER=8
[2025-10-05 15:54:54] Set ATHENA_CORE_NUMBER=8
[2025-10-05 15:54:54] Starting ATLAS job with PandaID=6831642000
[2025-10-05 15:54:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-05 17:15:01]  *** The last 200 lines of the pilot log: ***
[2025-10-05 17:15:01]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6831642000/log.46376905._085895.job.log.tgz.1
[2025-10-05 17:15:01]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9c/ba/log.46376905._085895.job.log.tgz.1
[2025-10-05 17:15:01]  workdir=None
[2025-10-05 17:15:01] ]
[2025-10-05 17:15:01] 2025-10-05 21:14:17,071 | INFO     | transferring file log.46376905._085895.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6831642000/log.46376905._085895.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-05 17:15:01] 2025-10-05 21:14:17,071 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6831642000/log.46376905._085895.job.log.tgz.1 /tmp/boinchome/slots/0/log.46376905._085895.job
[2025-10-05 17:15:01] 2025-10-05 21:14:17,169 | INFO     | adding to output.list: log.46376905._085895.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9c/ba/log.46376905._085895.job.log.tg
[2025-10-05 17:15:01] 2025-10-05 21:14:17,170 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-05 17:15:01] 2025-10-05 21:14:17,170 | INFO     | summary of transferred files:
[2025-10-05 17:15:01] 2025-10-05 21:14:17,170 | INFO     |  -- lfn=log.46376905._085895.job.log.tgz.1, status_code=0, status=transferred
[2025-10-05 17:15:01] 2025-10-05 21:14:17,171 | INFO     | stage-out finished correctly
[2025-10-05 17:15:01] 2025-10-05 21:14:17,267 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-05 17:15:01] 2025-10-05 21:14:17,378 | INFO     | time since job start (4724s) is within the limit (172800.0s)
[2025-10-05 17:15:01] 2025-10-05 21:14:18,135 | INFO     | job 6831642000 has state=finished
[2025-10-05 17:15:01] 2025-10-05 21:14:18,136 | INFO     | preparing for final server update for job 6831642000 in state='finished'
[2025-10-05 17:15:01] 2025-10-05 21:14:18,136 | INFO     | this job has now completed (state=finished)
[2025-10-05 17:15:01] 2025-10-05 21:14:18,136 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-05 17:15:01] 2025-10-05 21:14:18,137 | INFO     | log transfer has been attempted: DONE
[2025-10-05 17:15:01] 2025-10-05 21:14:18,137 | INFO     | job 6831642000 has finished - writing final server update
[2025-10-05 17:15:01] 2025-10-05 21:14:18,137 | INFO     | total number of processed events: 400 (read)
[2025-10-05 17:15:01] 2025-10-05 21:14:18,138 | INFO     | executing command: lscpu
[2025-10-05 17:15:01] 2025-10-05 21:14:18,201 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-05 17:15:01] 2025-10-05 21:14:18,635 | INFO     | monitor loop #337: job 0:6831642000 is in state 'finished'
[2025-10-05 17:15:01] 2025-10-05 21:14:18,635 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-05 17:15:01] 2025-10-05 21:14:19,388 | INFO     | time since job start (4726s) is within the limit (172800.0s)
[2025-10-05 17:15:01] 2025-10-05 21:14:21,140 | INFO     | monitor loop #338: job 0:6831642000 is in state 'finished'
[2025-10-05 17:15:01] 2025-10-05 21:14:21,140 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-05 17:15:01] 2025-10-05 21:14:21,394 | INFO     | time since job start (4728s) is within the limit (172800.0s)
[2025-10-05 17:15:01] 2025-10-05 21:14:23,400 | INFO     | time since job start (4730s) is within the limit (172800.0s)
[2025-10-05 17:15:01] 2025-10-05 21:14:23,645 | INFO     | monitor loop #339: job 0:6831642000 is in state 'finished'
[2025-10-05 17:15:01] 2025-10-05 21:14:23,645 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-05 17:15:01] 2025-10-05 21:14:25,411 | INFO     | time since job start (4732s) is within the limit (172800.0s)
[2025-10-05 17:15:01] 2025-10-05 21:14:26,150 | INFO     | monitor loop #340: job 0:6831642000 is in state 'finished'
[2025-10-05 17:15:01] 2025-10-05 21:14:26,150 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-05 17:15:01] 2025-10-05 21:14:27,421 | INFO     | time since job start (4734s) is within the limit (172800.0s)
[2025-10-05 17:15:01] 2025-10-05 21:14:27,678 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-05 17:15:01] 2025-10-05 21:14:27,681 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3306.576125
[2025-10-05 17:15:01] 2025-10-05 21:14:27,689 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6831642000/memory_monitor_summary.json (trf name=prmon)
[2025-10-05 17:15:01] 2025-10-05 21:14:27,690 | INFO     | extracted standard info from prmon json
[2025-10-05 17:15:01] 2025-10-05 21:14:27,690 | INFO     | extracted standard memory fields from prmon json
[2025-10-05 17:15:01] 2025-10-05 21:14:27,690 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-05 17:15:01] 2025-10-05 21:14:27,690 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-05 17:15:01] 2025-10-05 21:14:27,690 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-05 17:15:01] 2025-10-05 21:14:27,691 | INFO     | fitting pss+swap vs Time
[2025-10-05 17:15:01] 2025-10-05 21:14:27,691 | INFO     | sum of square deviations: 106350616.3428572
[2025-10-05 17:15:01] 2025-10-05 21:14:27,692 | INFO     | sum of deviations: -3638563749.6285706
[2025-10-05 17:15:01] 2025-10-05 21:14:27,692 | INFO     | mean x: 1759696612.7714286
[2025-10-05 17:15:01] 2025-10-05 21:14:27,692 | INFO     | mean y: 2549838.0857142857
[2025-10-05 17:15:01] 2025-10-05 21:14:27,692 | INFO     | -- intersect: 60206886453.61424
[2025-10-05 17:15:01] 2025-10-05 21:14:27,692 | INFO     | intersect: 60206886453.61424
[2025-10-05 17:15:01] 2025-10-05 21:14:27,692 | INFO     | chi2: 0.044670486298684656
[2025-10-05 17:15:01] 2025-10-05 21:14:27,692 | INFO     | -- intersect: 60206886453.61424
[2025-10-05 17:15:01] 2025-10-05 21:14:27,692 | INFO     | current memory leak: -34.21 B/s (using 70 data points, chi2=0.04)
[2025-10-05 17:15:01] 2025-10-05 21:14:27,692 | INFO     | could have reported an average CPU frequency of 3281 MHz (6 samples)
[2025-10-05 17:15:01] 2025-10-05 21:14:27,692 | INFO     | ..............................
[2025-10-05 17:15:01] 2025-10-05 21:14:27,692 | INFO     | . Timing measurements:
[2025-10-05 17:15:01] 2025-10-05 21:14:27,692 | INFO     | . get job = 0 s
[2025-10-05 17:15:01] 2025-10-05 21:14:27,692 | INFO     | . initial setup = 7 s
[2025-10-05 17:15:01] 2025-10-05 21:14:27,692 | INFO     | . payload setup = 23 s
[2025-10-05 17:15:01] 2025-10-05 21:14:27,692 | INFO     | . stage-in = 0 s
[2025-10-05 17:15:01] 2025-10-05 21:14:27,692 | INFO     | . payload execution = 4656 s
[2025-10-05 17:15:01] 2025-10-05 21:14:27,693 | INFO     | . stage-out = 1 s
[2025-10-05 17:15:01] 2025-10-05 21:14:27,693 | INFO     | . log creation = 0 s
[2025-10-05 17:15:01] 2025-10-05 21:14:27,693 | INFO     | ..............................
[2025-10-05 17:15:01] 2025-10-05 21:14:27,746 | INFO     | 
[2025-10-05 17:15:01] 2025-10-05 21:14:27,746 | INFO     | job summary report
[2025-10-05 17:15:01] 2025-10-05 21:14:27,746 | INFO     | --------------------------------------------------
[2025-10-05 17:15:01] 2025-10-05 21:14:27,746 | INFO     | PanDA job id: 6831642000
[2025-10-05 17:15:01] 2025-10-05 21:14:27,746 | INFO     | task id: 46376905
[2025-10-05 17:15:01] 2025-10-05 21:14:27,746 | INFO     | errors: (none)
[2025-10-05 17:15:01] 2025-10-05 21:14:27,746 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-05 17:15:01] 2025-10-05 21:14:27,746 | INFO     | pilot state: finished 
[2025-10-05 17:15:01] 2025-10-05 21:14:27,746 | INFO     | transexitcode: 0
[2025-10-05 17:15:01] 2025-10-05 21:14:27,746 | INFO     | exeerrorcode: 0
[2025-10-05 17:15:01] 2025-10-05 21:14:27,746 | INFO     | exeerrordiag: 
[2025-10-05 17:15:01] 2025-10-05 21:14:27,746 | INFO     | exitcode: 0
[2025-10-05 17:15:01] 2025-10-05 21:14:27,746 | INFO     | exitmsg: OK
[2025-10-05 17:15:01] 2025-10-05 21:14:27,747 | INFO     | cpuconsumptiontime: 26745 s
[2025-10-05 17:15:01] 2025-10-05 21:14:27,747 | INFO     | nevents: 400
[2025-10-05 17:15:01] 2025-10-05 21:14:27,747 | INFO     | neventsw: 0
[2025-10-05 17:15:01] 2025-10-05 21:14:27,747 | INFO     | pid: 3094317
[2025-10-05 17:15:01] 2025-10-05 21:14:27,747 | INFO     | pgrp: 3094317
[2025-10-05 17:15:01] 2025-10-05 21:14:27,747 | INFO     | corecount: 8
[2025-10-05 17:15:01] 2025-10-05 21:14:27,747 | INFO     | event service: False
[2025-10-05 17:15:01] 2025-10-05 21:14:27,747 | INFO     | sizes: {0: 2348645, 1: 2348844, 2: 2348844, 12: 2348872, 13: 2349162, 23: 2349218, 4684: 2375508, 4687: 2384562, 4698: 2384700}
[2025-10-05 17:15:01] 2025-10-05 21:14:27,747 | INFO     | --------------------------------------------------
[2025-10-05 17:15:01] 2025-10-05 21:14:27,747 | INFO     | 
[2025-10-05 17:15:01] 2025-10-05 21:14:27,747 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-05 17:15:01] 2025-10-05 21:14:27,769 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-05 17:15:01] 2025-10-05 21:14:27,769 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-05 17:15:01] 2025-10-05 21:14:27,769 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-05 17:15:01] 2025-10-05 21:14:27,769 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-05 17:15:01] 2025-10-05 21:14:27,770 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-05 17:15:01] 2025-10-05 21:14:27,770 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-05 17:15:01] 2025-10-05 21:14:27,770 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-05 17:15:01] 2025-10-05 21:14:27,770 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-05 17:15:01] 2025-10-05 21:14:27,770 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-05 17:15:01] 2025-10-05 21:14:27,770 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-05 17:15:01] 2025-10-05 21:14:27,770 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-05 17:15:01] 2025-10-05 21:14:27,770 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-05 17:15:01] 2025-10-05 21:14:27,770 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-05 17:15:01] 2025-10-05 21:14:27,770 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-05 17:15:01] 2025-10-05 21:14:27,770 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-05 17:15:01] 2025-10-05 21:14:27,770 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-05 17:15:01] 2025-10-05 21:14:27,770 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-05 17:15:01] 2025-10-05 21:14:27,770 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-05 17:15:01] 2025-10-05 21:14:27,771 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-05 17:15:01] 2025-10-05 21:14:27,771 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-05 17:15:01] 2025-10-05 21:14:27,771 | INFO     | job 6831642000 has completed (purged errors)
[2025-10-05 17:15:01] 2025-10-05 21:14:27,771 | INFO     | overall cleanup function is called
[2025-10-05 17:15:01] 2025-10-05 21:14:28,780 | INFO     | --- collectZombieJob: --- 10, [3094317]
[2025-10-05 17:15:01] 2025-10-05 21:14:28,780 | INFO     | zombie collector waiting for pid 3094317
[2025-10-05 17:15:01] 2025-10-05 21:14:28,780 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-05 17:15:01] 2025-10-05 21:14:28,781 | INFO     | collected zombie processes
[2025-10-05 17:15:01] 2025-10-05 21:14:28,781 | INFO     | will attempt to kill all subprocesses of pid=3094317
[2025-10-05 17:15:01] 2025-10-05 21:14:29,276 | INFO     | process IDs to be killed: [3094317] (in reverse order)
[2025-10-05 17:15:01] 2025-10-05 21:14:29,384 | WARNING  | found no corresponding commands to process id(s)
[2025-10-05 17:15:01] 2025-10-05 21:14:29,384 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-05 17:15:01] 2025-10-05 21:14:29,448 | INFO     | did not find any defunct processes belonging to 3094317
[2025-10-05 17:15:01] 2025-10-05 21:14:29,462 | INFO     | did not find any defunct processes belonging to 3094317
[2025-10-05 17:15:01] 2025-10-05 21:14:29,462 | INFO     | ready for new job
[2025-10-05 17:15:01] 2025-10-05 21:14:29,462 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-05 17:15:01] 2025-10-05 21:14:29,464 | INFO     | ***************************************
[2025-10-05 17:15:01] 2025-10-05 21:14:29,464 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-05 17:15:01] 2025-10-05 21:14:29,464 | INFO     | ***************************************
[2025-10-05 17:15:01] 2025-10-05 21:14:29,464 | INFO     | 
[2025-10-05 17:15:01] 2025-10-05 21:14:29,469 | INFO     | architecture information:
[2025-10-05 17:15:01] 2025-10-05 21:14:29,469 | INFO     | executing command: cat /etc/os-release
[2025-10-05 17:15:01] 2025-10-05 21:14:29,481 | INFO     | cat /etc/os-release:
[2025-10-05 17:15:01] NAME="CentOS Linux"
[2025-10-05 17:15:01] VERSION="7 (Core)"
[2025-10-05 17:15:01] ID="centos"
[2025-10-05 17:15:01] ID_LIKE="rhel fedora"
[2025-10-05 17:15:01] VERSION_ID="7"
[2025-10-05 17:15:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-05 17:15:01] ANSI_COLOR="0;31"
[2025-10-05 17:15:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-05 17:15:01] HOME_URL="https://www.centos.org/"
[2025-10-05 17:15:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-05 17:15:01] 
[2025-10-05 17:15:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-05 17:15:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-05 17:15:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-05 17:15:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-05 17:15:01] 
[2025-10-05 17:15:01] 2025-10-05 21:14:29,482 | INFO     | ***************************************
[2025-10-05 17:15:01] 2025-10-05 21:14:29,984 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-05 17:15:01] 2025-10-05 21:14:30,003 | INFO     | sufficient remaining disk space (127369478144 B)
[2025-10-05 17:15:01] 2025-10-05 21:14:30,003 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-05 17:15:01] 2025-10-05 21:14:30,003 | INFO     | current server update state: UPDATING_FINAL
[2025-10-05 17:15:01] 2025-10-05 21:14:30,003 | INFO     | update_server=False
[2025-10-05 17:15:01] 2025-10-05 21:14:30,003 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-05 17:15:01] 2025-10-05 21:14:30,003 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-05 17:15:01] 2025-10-05 21:14:30,004 | INFO     | aborting loop
[2025-10-05 17:15:01] 2025-10-05 21:14:30,329 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-05 17:15:01] 2025-10-05 21:14:30,819 | INFO     | all data control threads have been joined
[2025-10-05 17:15:01] 2025-10-05 21:14:31,009 | INFO     | [job] retrieve thread has finished
[2025-10-05 17:15:01] 2025-10-05 21:14:31,010 | INFO     | [job] job monitor thread has finished
[2025-10-05 17:15:01] 2025-10-05 21:14:31,114 | INFO     | all payload control threads have been joined
[2025-10-05 17:15:01] 2025-10-05 21:14:31,426 | INFO     | [payload] validate_post thread has finished
[2025-10-05 17:15:01] 2025-10-05 21:14:31,554 | INFO     | all job control threads have been joined
[2025-10-05 17:15:01] 2025-10-05 21:14:31,640 | INFO     | [payload] execute_payloads thread has finished
[2025-10-05 17:15:01] 2025-10-05 21:14:31,815 | INFO     | [payload] failed_post thread has finished
[2025-10-05 17:15:01] 2025-10-05 21:14:31,825 | INFO     | [data] control thread has finished
[2025-10-05 17:15:01] 2025-10-05 21:14:32,000 | INFO     | [job] create_data_payload thread has finished
[2025-10-05 17:15:01] 2025-10-05 21:14:32,005 | INFO     | [payload] validate_pre thread has finished
[2025-10-05 17:15:01] 2025-10-05 21:14:32,025 | INFO     | [job] validate thread has finished
[2025-10-05 17:15:01] 2025-10-05 21:14:32,120 | INFO     | [payload] control thread has finished
[2025-10-05 17:15:01] 2025-10-05 21:14:32,336 | INFO     | [data] copytool_out thread has finished
[2025-10-05 17:15:01] 2025-10-05 21:14:32,395 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-05 17:15:01] 2025-10-05 21:14:32,478 | INFO     | [data] copytool_in thread has finished
[2025-10-05 17:15:01] 2025-10-05 21:14:32,560 | INFO     | [job] control thread has finished
[2025-10-05 17:15:01] 2025-10-05 21:14:32,774 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-05 17:15:01] 2025-10-05 21:14:33,778 | INFO     | [job] queue monitor thread has finished
[2025-10-05 17:15:01] 2025-10-05 21:14:36,423 | INFO     | [data] queue_monitor thread has finished
[2025-10-05 17:15:01] 2025-10-05 21:14:40,299 | INFO     | [monitor] cgroup control has ended
[2025-10-05 17:15:01] 2025-10-05 21:14:40,462 | INFO     | job.realtimelogging is not enabled
[2025-10-05 17:15:01] 2025-10-05 21:14:41,468 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-05 17:15:01] 2025-10-05 21:14:42,180 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140319940597568)>', '<ExcThread(monitor, started 140318989084416)>']
[2025-10-05 17:15:01] 2025-10-05 21:14:47,206 | INFO     | all workflow threads have been joined
[2025-10-05 17:15:01] 2025-10-05 21:14:47,206 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-05 17:15:01] 2025-10-05 21:14:47,206 | INFO     | traces error code: 0
[2025-10-05 17:15:01] 2025-10-05 21:14:47,206 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-05 17:15:01] 2025-10-05 21:15:00,936 | INFO     | PID=3087395 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-05 17:15:01] 2025-10-05 21:15:00,936 | INFO     | .. there are 17 such processes running
[2025-10-05 17:15:01] 2025-10-05 21:15:00,937 | INFO     | found 0 job(s) in 20 queues
[2025-10-05 17:15:01] 2025-10-05 21:15:00,937 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-05 17:15:01] 2025-10-05 21:15:00,937 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-05 17:15:01] 2025-10-05 21:15:00,937 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-05 17:15:01] 2025-10-05 21:15:00,937 | INFO     | [monitor] control thread has ended
[2025-10-05 17:15:01] 2025-10-05 21:15:01,052 [wrapper] ==== pilot stdout END ====
[2025-10-05 17:15:01] 2025-10-05 21:15:01,122 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-05 17:15:01] 2025-10-05 21:15:01,136 [wrapper] pilotpid: 3087395
[2025-10-05 17:15:01] 2025-10-05 21:15:01,168 [wrapper] Pilot exit status: 0
[2025-10-05 17:15:01] 2025-10-05 21:15:01,201 [wrapper] pandaids: 6831642000
[2025-10-05 17:15:01] 2025-10-05 21:15:01,275 [wrapper] cleanup supervisor_pilot 3225235 3087396
[2025-10-05 17:15:01] 2025-10-05 21:15:01,296 [wrapper] Test setup, not cleaning
[2025-10-05 17:15:01] 2025-10-05 21:15:01,299 [wrapper] apfmon messages muted
[2025-10-05 17:15:01] 2025-10-05 21:15:01,305 [wrapper] ==== wrapper stdout END ====
[2025-10-05 17:15:01] 2025-10-05 21:15:01,307 [wrapper] ==== wrapper stderr END ====
[2025-10-05 17:15:01]  *** Error codes and diagnostics ***
[2025-10-05 17:15:01]     "exeErrorCode": 0,
[2025-10-05 17:15:01]     "exeErrorDiag": "",
[2025-10-05 17:15:01]     "pilotErrorCode": 0,
[2025-10-05 17:15:01]     "pilotErrorDiag": "",
[2025-10-05 17:15:01]  *** Listing of results directory ***
[2025-10-05 17:15:01] total 390000
[2025-10-05 17:15:01] -rw-r--r--. 1 boincer umatlas    552446 Oct  5 08:57 pilot3.tar.gz
[2025-10-05 17:15:01] -rw-r--r--. 1 boincer umatlas      5112 Oct  5 09:40 queuedata.json
[2025-10-05 17:15:01] -rwx------. 1 boincer umatlas     36292 Oct  5 09:41 runpilot2-wrapper.sh
[2025-10-05 17:15:01] -rw-r--r--. 1 boincer umatlas       100 Oct  5 15:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-05 17:15:01] -rwxr-xr-x. 1 boincer umatlas      7986 Oct  5 15:54 run_atlas
[2025-10-05 17:15:01] -rw-r--r--. 1 boincer umatlas       105 Oct  5 15:54 job.xml
[2025-10-05 17:15:01] -rw-r--r--. 2 boincer umatlas 217463418 Oct  5 15:54 EVNT.46376901._003153.pool.root.1
[2025-10-05 17:15:01] -rw-r--r--. 2 boincer umatlas     15120 Oct  5 15:54 start_atlas.sh
[2025-10-05 17:15:01] drwxrwx--x. 2 boincer umatlas      4096 Oct  5 15:54 shared
[2025-10-05 17:15:01] -rw-r--r--. 2 boincer umatlas    565601 Oct  5 15:54 input.tar.gz
[2025-10-05 17:15:01] -rw-r--r--. 1 boincer umatlas         0 Oct  5 15:54 boinc_lockfile
[2025-10-05 17:15:01] -rw-r--r--. 1 boincer umatlas      2519 Oct  5 15:54 pandaJob.out
[2025-10-05 17:15:01] -rw-------. 1 boincer umatlas    974136 Oct  5 15:55 agis_schedconf.cvmfs.json
[2025-10-05 17:15:01] -rw-------. 1 boincer umatlas   1560401 Oct  5 15:55 agis_ddmendpoints.agis.ALL.json
[2025-10-05 17:15:01] drwx------. 4 boincer umatlas      4096 Oct  5 15:55 pilot3
[2025-10-05 17:15:01] -rw-r--r--. 1 boincer umatlas      6945 Oct  5 17:13 init_data.xml
[2025-10-05 17:15:01] -rw-r--r--. 1 boincer umatlas       530 Oct  5 17:13 boinc_task_state.xml
[2025-10-05 17:15:01] -rw-------. 1 boincer umatlas 176003425 Oct  5 17:13 HITS.46376905._085895.pool.root.1
[2025-10-05 17:15:01] -rw-------. 1 boincer umatlas      1031 Oct  5 17:14 memory_monitor_summary.json
[2025-10-05 17:15:01] -rw-------. 1 boincer umatlas    331903 Oct  5 17:14 log.46376905._085895.job.log.tgz.1
[2025-10-05 17:15:01] -rw-------. 1 boincer umatlas      7775 Oct  5 17:14 heartbeat.json
[2025-10-05 17:15:01] -rw-r--r--. 1 boincer umatlas        27 Oct  5 17:14 wrapper_checkpoint.txt
[2025-10-05 17:15:01] -rw-r--r--. 1 boincer umatlas      8192 Oct  5 17:14 boinc_mmap_file
[2025-10-05 17:15:01] -rw-------. 1 boincer umatlas        95 Oct  5 17:15 pilot_heartbeat.json
[2025-10-05 17:15:01] -rw-------. 1 boincer umatlas       823 Oct  5 17:15 pilotlog.txt
[2025-10-05 17:15:01] -rw-------. 1 boincer umatlas    673759 Oct  5 17:15 log.46376905._085895.job.log.1
[2025-10-05 17:15:01] -rw-------. 1 boincer umatlas       357 Oct  5 17:15 output.list
[2025-10-05 17:15:01] -rw-r--r--. 1 boincer umatlas       620 Oct  5 17:15 runtime_log
[2025-10-05 17:15:01] -rw-------. 1 boincer umatlas   1024000 Oct  5 17:15 result.tar.gz
[2025-10-05 17:15:01] -rw-r--r--. 1 boincer umatlas      8698 Oct  5 17:15 runtime_log.err
[2025-10-05 17:15:01] -rw-------. 1 boincer umatlas       651 Oct  5 17:15 qPqLDmeAeP8n9Rq4apOajLDm4fhM0noT9bVof3QYDmxQGMDmfTN0vn.diag
[2025-10-05 17:15:01] -rw-r--r--. 1 boincer umatlas     22290 Oct  5 17:15 stderr.txt
[2025-10-05 17:15:01] HITS file was successfully produced:
[2025-10-05 17:15:01] -rw-------. 1 boincer umatlas 176003425 Oct  5 17:13 shared/HITS.pool.root.1
[2025-10-05 17:15:01]  *** Contents of shared directory: ***
[2025-10-05 17:15:01] total 385828
[2025-10-05 17:15:01] -rw-r--r--. 2 boincer umatlas 217463418 Oct  5 15:54 ATLAS.root_0
[2025-10-05 17:15:01] -rw-r--r--. 2 boincer umatlas     15120 Oct  5 15:54 start_atlas.sh
[2025-10-05 17:15:01] -rw-r--r--. 2 boincer umatlas    565601 Oct  5 15:54 input.tar.gz
[2025-10-05 17:15:01] -rw-------. 1 boincer umatlas 176003425 Oct  5 17:13 HITS.pool.root.1
[2025-10-05 17:15:01] -rw-------. 1 boincer umatlas   1024000 Oct  5 17:15 result.tar.gz
17:15:03 (3083337): run_atlas exited; CPU time 26779.911133
17:15:03 (3083337): called boinc_finish(0)

</stderr_txt>
]]>

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