Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:47:38 (3119728): wrapper (7.7.26015): starting
16:47:38 (3119728): wrapper: running run_atlas (--nthreads 4)
[2025-10-11 16:47:38] Arguments: --nthreads 4
[2025-10-11 16:47:38] Threads: 4
[2025-10-11 16:47:38] Checking for CVMFS
[2025-10-11 16:47:38] No cvmfs_config command found, will try listing directly
[2025-10-11 16:47:38] CVMFS is ok
[2025-10-11 16:47:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 16:47:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 16:47:38] Further information can be found at the LHC@home message board.
[2025-10-11 16:47:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 16:47:38] Checking for apptainer binary...
[2025-10-11 16:47:38] which: no apptainer in ((null))
[2025-10-11 16:47:38] apptainer is not installed, using version from CVMFS
[2025-10-11 16:47:38] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 16:47:38] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot92/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut16.grid.cesnet.cz
[2025-10-11 16:47:38] apptainer works
[2025-10-11 16:47:38] Set ATHENA_PROC_NUMBER=4
[2025-10-11 16:47:38] Set ATHENA_CORE_NUMBER=4
[2025-10-11 16:47:38] Starting ATLAS job with PandaID=6829589899
[2025-10-11 16:47:38] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot92/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
19:27:05 (3552417): wrapper (7.7.26015): starting
19:27:05 (3552417): wrapper: running run_atlas (--nthreads 4)
[2025-10-11 19:27:05] Arguments: --nthreads 4
[2025-10-11 19:27:05] Threads: 4
[2025-10-11 19:27:05] This job has been restarted, cleaning up previous attempt
[2025-10-11 19:27:05] Checking for CVMFS
[2025-10-11 19:27:05] No cvmfs_config command found, will try listing directly
[2025-10-11 19:27:05] CVMFS is ok
[2025-10-11 19:27:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 19:27:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 19:27:05] Further information can be found at the LHC@home message board.
[2025-10-11 19:27:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 19:27:05] Checking for apptainer binary...
[2025-10-11 19:27:05] which: no apptainer in ((null))
[2025-10-11 19:27:05] apptainer is not installed, using version from CVMFS
[2025-10-11 19:27:05] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 19:27:05] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot92/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut16.grid.cesnet.cz
[2025-10-11 19:27:05] apptainer works
[2025-10-11 19:27:05] Set ATHENA_PROC_NUMBER=4
[2025-10-11 19:27:05] Set ATHENA_CORE_NUMBER=4
[2025-10-11 19:27:05] Starting ATLAS job with PandaID=6829589899
[2025-10-11 19:27:05] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot92/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 22:01:00]  *** The last 200 lines of the pilot log: ***
[2025-10-11 22:01:00] 2025-10-11 19:41:28,808 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 22:01:00] 2025-10-11 19:41:28,810 | INFO     | fitting pss+swap vs Time
[2025-10-11 22:01:00] 2025-10-11 19:41:28,811 | INFO     | sum of square deviations: 713140813.0
[2025-10-11 22:01:00] 2025-10-11 19:41:28,811 | INFO     | sum of deviations: -23588833041.0
[2025-10-11 22:01:00] 2025-10-11 19:41:28,812 | INFO     | mean x: 1760207669.5
[2025-10-11 22:01:00] 2025-10-11 19:41:28,812 | INFO     | mean y: 2354053.0757575757
[2025-10-11 22:01:00] 2025-10-11 19:41:28,812 | INFO     | -- intersect: 58225420348.572174
[2025-10-11 22:01:00] 2025-10-11 19:41:28,812 | INFO     | intersect: 58225420348.572174
[2025-10-11 22:01:00] 2025-10-11 19:41:28,812 | INFO     | chi2: 2.223864615703319
[2025-10-11 22:01:00] 2025-10-11 19:41:28,812 | INFO     | sum of square deviations: 635130048.0
[2025-10-11 22:01:00] 2025-10-11 19:41:28,813 | INFO     | sum of deviations: -14536257421.999996
[2025-10-11 22:01:00] 2025-10-11 19:41:28,813 | INFO     | mean x: 1760207517.0
[2025-10-11 22:01:00] 2025-10-11 19:41:28,813 | INFO     | mean y: 2371269.7874015747
[2025-10-11 22:01:00] 2025-10-11 19:41:28,813 | INFO     | -- intersect: 40288340519.42906
[2025-10-11 22:01:00] 2025-10-11 19:41:28,813 | INFO     | intersect: 40288340519.42906
[2025-10-11 22:01:00] 2025-10-11 19:41:28,814 | INFO     | chi2: 1.463296809596188
[2025-10-11 22:01:00] 2025-10-11 19:41:28,814 | INFO     | current chi2=1.463296809596188 (change=34.20027463616952 %)
[2025-10-11 22:01:00] 2025-10-11 19:41:28,814 | INFO     | sum of square deviations: 563026370.5
[2025-10-11 22:01:00] 2025-10-11 19:41:28,815 | INFO     | sum of deviations: -13651691328.499998
[2025-10-11 22:01:00] 2025-10-11 19:41:28,815 | INFO     | mean x: 1760207364.5
[2025-10-11 22:01:00] 2025-10-11 19:41:28,815 | INFO     | mean y: 2373141.5655737706
[2025-10-11 22:01:00] 2025-10-11 19:41:28,815 | INFO     | -- intersect: 42682092730.83921
[2025-10-11 22:01:00] 2025-10-11 19:41:28,815 | INFO     | intersect: 42682092730.83921
[2025-10-11 22:01:00] 2025-10-11 19:41:28,815 | INFO     | chi2: 1.4579684698266622
[2025-10-11 22:01:00] 2025-10-11 19:41:28,815 | INFO     | current chi2=1.4579684698266622 (change=0.36413253514823546 %)
[2025-10-11 22:01:00] 2025-10-11 19:41:28,815 | INFO     | right removable region: 121
[2025-10-11 22:01:00] 2025-10-11 19:41:28,816 | INFO     | sum of square deviations: 635130048.0
[2025-10-11 22:01:00] 2025-10-11 19:41:28,817 | INFO     | sum of deviations: -35483676881.0
[2025-10-11 22:01:00] 2025-10-11 19:41:28,817 | INFO     | mean x: 1760207822.0
[2025-10-11 22:01:00] 2025-10-11 19:41:28,817 | INFO     | mean y: 2376562.433070866
[2025-10-11 22:01:00] 2025-10-11 19:41:28,817 | INFO     | -- intersect: 98342308354.25528
[2025-10-11 22:01:00] 2025-10-11 19:41:28,817 | INFO     | intersect: 98342308354.25528
[2025-10-11 22:01:00] 2025-10-11 19:41:28,817 | INFO     | chi2: 1.0189675699643297
[2025-10-11 22:01:00] 2025-10-11 19:41:28,817 | INFO     | current chi2=1.0189675699643297 (change=54.180323623609105 %)
[2025-10-11 22:01:00] 2025-10-11 19:41:28,818 | INFO     | sum of square deviations: 563026370.5
[2025-10-11 22:01:00] 2025-10-11 19:41:28,818 | INFO     | sum of deviations: -29274015778.000008
[2025-10-11 22:01:00] 2025-10-11 19:41:28,818 | INFO     | mean x: 1760207974.5
[2025-10-11 22:01:00] 2025-10-11 19:41:28,818 | INFO     | mean y: 2363415.2622950817
[2025-10-11 22:01:00] 2025-10-11 19:41:28,819 | INFO     | -- intersect: 91522687716.08372
[2025-10-11 22:01:00] 2025-10-11 19:41:28,819 | INFO     | intersect: 91522687716.08372
[2025-10-11 22:01:00] 2025-10-11 19:41:28,819 | INFO     | chi2: 1.0008271440355179
[2025-10-11 22:01:00] 2025-10-11 19:41:28,819 | INFO     | current chi2=1.0008271440355179 (change=1.7802751003593618 %)
[2025-10-11 22:01:00] 2025-10-11 19:41:28,819 | INFO     | left removable region: 20
[2025-10-11 22:01:00] 2025-10-11 19:41:28,819 | INFO     | sum of square deviations: 319447850.0
[2025-10-11 22:01:00] 2025-10-11 19:41:28,820 | INFO     | sum of deviations: -8325903298.000001
[2025-10-11 22:01:00] 2025-10-11 19:41:28,820 | INFO     | mean x: 1760207944.0
[2025-10-11 22:01:00] 2025-10-11 19:41:28,820 | INFO     | mean y: 2352866.2772277226
[2025-10-11 22:01:00] 2025-10-11 19:41:28,820 | INFO     | -- intersect: 45879390780.65168
[2025-10-11 22:01:00] 2025-10-11 19:41:28,820 | INFO     | intersect: 45879390780.65168
[2025-10-11 22:01:00] 2025-10-11 19:41:28,820 | INFO     | chi2: 0.11479556688478189
[2025-10-11 22:01:00] 2025-10-11 19:41:28,821 | INFO     | -- intersect: 45879390780.65168
[2025-10-11 22:01:00] 2025-10-11 19:41:28,821 | INFO     | current memory leak: -26.06 B/s (using 101 data points, chi2=0.11)
[2025-10-11 22:01:00] 2025-10-11 19:41:28,821 | INFO     | could have reported an average CPU frequency of 2708 MHz (8 samples)
[2025-10-11 22:01:00] 2025-10-11 19:41:28,821 | INFO     | ..............................
[2025-10-11 22:01:00] 2025-10-11 19:41:28,821 | INFO     | . Timing measurements:
[2025-10-11 22:01:00] 2025-10-11 19:41:28,822 | INFO     | . get job = 0 s
[2025-10-11 22:01:00] 2025-10-11 19:41:28,822 | INFO     | . initial setup = 1 s
[2025-10-11 22:01:00] 2025-10-11 19:41:28,822 | INFO     | . payload setup = 8 s
[2025-10-11 22:01:00] 2025-10-11 19:41:28,822 | INFO     | . stage-in = 0 s
[2025-10-11 22:01:00] 2025-10-11 19:41:28,822 | INFO     | . payload execution = 8005 s
[2025-10-11 22:01:00] 2025-10-11 19:41:28,822 | INFO     | . stage-out = 0 s
[2025-10-11 22:01:00] 2025-10-11 19:41:28,822 | INFO     | . log creation = 0 s
[2025-10-11 22:01:00] 2025-10-11 19:41:28,822 | INFO     | ..............................
[2025-10-11 22:01:00] 2025-10-11 19:41:28,928 | INFO     | 
[2025-10-11 22:01:00] 2025-10-11 19:41:28,928 | INFO     | job summary report
[2025-10-11 22:01:00] 2025-10-11 19:41:28,928 | INFO     | --------------------------------------------------
[2025-10-11 22:01:00] 2025-10-11 19:41:28,928 | INFO     | PanDA job id: 6829589899
[2025-10-11 22:01:00] 2025-10-11 19:41:28,928 | INFO     | task id: 46376905
[2025-10-11 22:01:00] 2025-10-11 19:41:28,928 | INFO     | errors: (none)
[2025-10-11 22:01:00] 2025-10-11 19:41:28,929 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 22:01:00] 2025-10-11 19:41:28,929 | INFO     | pilot state: finished 
[2025-10-11 22:01:00] 2025-10-11 19:41:28,929 | INFO     | transexitcode: 0
[2025-10-11 22:01:00] 2025-10-11 19:41:28,929 | INFO     | exeerrorcode: 0
[2025-10-11 22:01:00] 2025-10-11 19:41:28,929 | INFO     | exeerrordiag: 
[2025-10-11 22:01:00] 2025-10-11 19:41:28,929 | INFO     | exitcode: 0
[2025-10-11 22:01:00] 2025-10-11 19:41:28,929 | INFO     | exitmsg: OK
[2025-10-11 22:01:00] 2025-10-11 19:41:28,929 | INFO     | cpuconsumptiontime: 30677 s
[2025-10-11 22:01:00] 2025-10-11 19:41:28,929 | INFO     | nevents: 400
[2025-10-11 22:01:00] 2025-10-11 19:41:28,930 | INFO     | neventsw: 0
[2025-10-11 22:01:00] 2025-10-11 19:41:28,930 | INFO     | pid: 3564744
[2025-10-11 22:01:00] 2025-10-11 19:41:28,930 | INFO     | pgrp: 3564744
[2025-10-11 22:01:00] 2025-10-11 19:41:28,930 | INFO     | corecount: 4
[2025-10-11 22:01:00] 2025-10-11 19:41:28,930 | INFO     | event service: False
[2025-10-11 22:01:00] 2025-10-11 19:41:28,930 | INFO     | sizes: {0: 2348656, 1: 2348855, 7: 2349117, 11: 2349145, 8018: 2377147, 8019: 2386167, 8021: 2386351, 8031: 2386545}
[2025-10-11 22:01:00] 2025-10-11 19:41:28,930 | INFO     | --------------------------------------------------
[2025-10-11 22:01:00] 2025-10-11 19:41:28,930 | INFO     | 
[2025-10-11 22:01:00] 2025-10-11 19:41:28,930 | INFO     | executing command: ls -lF /scratch/boinc/var/slot92/slots/0
[2025-10-11 22:01:00] 2025-10-11 19:41:28,962 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 22:01:00] 2025-10-11 19:41:28,962 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 22:01:00] 2025-10-11 19:41:28,962 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 22:01:00] 2025-10-11 19:41:28,963 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 22:01:00] 2025-10-11 19:41:28,963 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 22:01:00] 2025-10-11 19:41:28,963 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 22:01:00] 2025-10-11 19:41:28,963 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 22:01:00] 2025-10-11 19:41:28,963 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 22:01:00] 2025-10-11 19:41:28,963 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 22:01:00] 2025-10-11 19:41:28,963 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 22:01:00] 2025-10-11 19:41:28,963 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 22:01:00] 2025-10-11 19:41:28,964 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 22:01:00] 2025-10-11 19:41:28,964 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 22:01:00] 2025-10-11 19:41:28,964 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 22:01:00] 2025-10-11 19:41:28,964 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 22:01:00] 2025-10-11 19:41:28,964 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 22:01:00] 2025-10-11 19:41:28,964 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 22:01:00] 2025-10-11 19:41:28,964 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 22:01:00] 2025-10-11 19:41:28,964 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 22:01:00] 2025-10-11 19:41:28,964 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 22:01:00] 2025-10-11 19:41:28,965 | INFO     | job 6829589899 has completed (purged errors)
[2025-10-11 22:01:00] 2025-10-11 19:41:28,965 | INFO     | overall cleanup function is called
[2025-10-11 22:01:00] 2025-10-11 19:41:29,549 | INFO     | PID=3556421 has CPU usage=17.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-11 22:01:00] 2025-10-11 19:41:29,549 | INFO     | .. there are 13 such processes running
[2025-10-11 22:01:00] 2025-10-11 19:41:29,975 | INFO     | --- collectZombieJob: --- 10, [3564744]
[2025-10-11 22:01:00] 2025-10-11 19:41:29,975 | INFO     | zombie collector waiting for pid 3564744
[2025-10-11 22:01:00] 2025-10-11 19:41:29,975 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 22:01:00] 2025-10-11 19:41:29,975 | INFO     | collected zombie processes
[2025-10-11 22:01:00] 2025-10-11 19:41:29,975 | INFO     | will attempt to kill all subprocesses of pid=3564744
[2025-10-11 22:01:00] 2025-10-11 19:41:30,794 | INFO     | process IDs to be killed: [3564744] (in reverse order)
[2025-10-11 22:01:00] 2025-10-11 19:41:31,038 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 22:01:00] 2025-10-11 19:41:31,038 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 22:01:00] 2025-10-11 19:41:31,070 | INFO     | did not find any defunct processes belonging to 3564744
[2025-10-11 22:01:00] 2025-10-11 19:41:31,102 | INFO     | did not find any defunct processes belonging to 3564744
[2025-10-11 22:01:00] 2025-10-11 19:41:31,102 | INFO     | ready for new job
[2025-10-11 22:01:00] 2025-10-11 19:41:31,102 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 22:01:00] 2025-10-11 19:41:31,104 | INFO     | ***************************************
[2025-10-11 22:01:00] 2025-10-11 19:41:31,104 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-11 22:01:00] 2025-10-11 19:41:31,105 | INFO     | ***************************************
[2025-10-11 22:01:00] 2025-10-11 19:41:31,105 | INFO     | 
[2025-10-11 22:01:00] 2025-10-11 19:41:31,113 | INFO     | architecture information:
[2025-10-11 22:01:00] 2025-10-11 19:41:31,113 | INFO     | executing command: cat /etc/os-release
[2025-10-11 22:01:00] 2025-10-11 19:41:31,132 | INFO     | cat /etc/os-release:
[2025-10-11 22:01:00] NAME="CentOS Linux"
[2025-10-11 22:01:00] VERSION="7 (Core)"
[2025-10-11 22:01:00] ID="centos"
[2025-10-11 22:01:00] ID_LIKE="rhel fedora"
[2025-10-11 22:01:00] VERSION_ID="7"
[2025-10-11 22:01:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 22:01:00] ANSI_COLOR="0;31"
[2025-10-11 22:01:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 22:01:00] HOME_URL="https://www.centos.org/"
[2025-10-11 22:01:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 22:01:00] 
[2025-10-11 22:01:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 22:01:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 22:01:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 22:01:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 22:01:00] 
[2025-10-11 22:01:00] 2025-10-11 19:41:31,132 | INFO     | ***************************************
[2025-10-11 22:01:00] 2025-10-11 19:41:31,634 | INFO     | executing command: df -mP /scratch/boinc/var/slot92/slots/0
[2025-10-11 22:01:00] 2025-10-11 19:41:31,661 | INFO     | sufficient remaining disk space (3335108165632 B)
[2025-10-11 22:01:00] 2025-10-11 19:41:31,662 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 22:01:00] 2025-10-11 19:41:31,662 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 22:01:00] 2025-10-11 19:41:31,662 | INFO     | update_server=False
[2025-10-11 22:01:00] 2025-10-11 19:41:31,662 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 22:01:00] 2025-10-11 19:41:31,662 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 22:01:00] 2025-10-11 19:41:31,663 | INFO     | aborting loop
[2025-10-11 22:01:00] 2025-10-11 19:41:31,923 | INFO     | all data control threads have been joined
[2025-10-11 22:01:00] 2025-10-11 19:41:32,370 | INFO     | [monitor] cgroup control has ended
[2025-10-11 22:01:00] 2025-10-11 19:41:32,646 | INFO     | all payload control threads have been joined
[2025-10-11 22:01:00] 2025-10-11 19:41:32,668 | INFO     | [job] retrieve thread has finished
[2025-10-11 22:01:00] 2025-10-11 19:41:32,668 | INFO     | [job] job monitor thread has finished
[2025-10-11 22:01:00] 2025-10-11 19:41:32,685 | INFO     | [payload] failed_post thread has finished
[2025-10-11 22:01:00] 2025-10-11 19:41:32,702 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 22:01:00] 2025-10-11 19:41:32,716 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 22:01:00] 2025-10-11 19:41:32,814 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 22:01:00] 2025-10-11 19:41:32,842 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 22:01:00] 2025-10-11 19:41:32,929 | INFO     | [data] control thread has finished
[2025-10-11 22:01:00] 2025-10-11 19:41:32,934 | INFO     | all job control threads have been joined
[2025-10-11 22:01:00] 2025-10-11 19:41:33,159 | INFO     | [payload] validate_post thread has finished
[2025-10-11 22:01:00] 2025-10-11 19:41:33,175 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 22:01:00] 2025-10-11 19:41:33,651 | INFO     | [payload] control thread has finished
[2025-10-11 22:01:00] 2025-10-11 19:41:33,655 | INFO     | [data] copytool_in thread has finished
[2025-10-11 22:01:00] 2025-10-11 19:41:33,757 | INFO     | [job] validate thread has finished
[2025-10-11 22:01:00] 2025-10-11 19:41:33,937 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 22:01:00] 2025-10-11 19:41:33,941 | INFO     | [job] control thread has finished
[2025-10-11 22:01:00] 2025-10-11 19:41:34,065 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 22:01:00] 2025-10-11 19:41:34,707 | INFO     | [data] copytool_out thread has finished
[2025-10-11 22:01:00] 2025-10-11 19:41:34,943 | INFO     | [job] queue monitor thread has finished
[2025-10-11 22:01:00] 2025-10-11 19:41:38,072 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 22:01:00] 2025-10-11 19:41:39,705 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23184653391680)>', '<ExcThread(monitor, started 23184407471872)>']
[2025-10-11 22:01:00] 2025-10-11 19:41:44,730 | INFO     | all workflow threads have been joined
[2025-10-11 22:01:00] 2025-10-11 19:41:44,730 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 22:01:00] 2025-10-11 19:41:44,730 | INFO     | traces error code: 0
[2025-10-11 22:01:00] 2025-10-11 19:41:44,731 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 22:01:00] 2025-10-11 19:42:02,479 | INFO     | PID=3556421 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 22:01:00] 2025-10-11 19:42:02,482 | INFO     | .. there are 13 such processes running
[2025-10-11 22:01:00] 2025-10-11 19:42:02,483 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 22:01:00] 2025-10-11 19:42:02,483 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 22:01:00] 2025-10-11 19:42:02,483 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 22:01:00] 2025-10-11 19:42:02,483 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 22:01:00] 2025-10-11 19:42:02,483 | INFO     | [monitor] control thread has ended
[2025-10-11 22:01:00] 2025-10-11 19:42:02,621 [wrapper] ==== pilot stdout END ====
[2025-10-11 22:01:00] 2025-10-11 19:42:02,625 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 22:01:00] 2025-10-11 19:42:02,629 [wrapper] pilotpid: 3556421
[2025-10-11 22:01:00] 2025-10-11 19:42:02,632 [wrapper] Pilot exit status: 0
[2025-10-11 22:01:00] 2025-10-11 19:42:02,647 [wrapper] pandaids: 6829589899 6829589899
[2025-10-11 22:01:00] 2025-10-11 19:42:02,817 [wrapper] cleanup supervisor_pilot 3994710 3556422
[2025-10-11 22:01:00] 2025-10-11 19:42:02,821 [wrapper] Test setup, not cleaning
[2025-10-11 22:01:00] 2025-10-11 19:42:02,824 [wrapper] apfmon messages muted
[2025-10-11 22:01:00] 2025-10-11 19:42:02,829 [wrapper] ==== wrapper stdout END ====
[2025-10-11 22:01:00] 2025-10-11 19:42:02,832 [wrapper] ==== wrapper stderr END ====
[2025-10-11 22:01:00]  *** Error codes and diagnostics ***
[2025-10-11 22:01:00]     "exeErrorCode": 0,
[2025-10-11 22:01:00]     "exeErrorDiag": "",
[2025-10-11 22:01:00]     "pilotErrorCode": 0,
[2025-10-11 22:01:00]     "pilotErrorDiag": "",
[2025-10-11 22:01:00]  *** Listing of results directory ***
[2025-10-11 22:01:00] total 592356
[2025-10-11 22:01:00] drwx------ 4 boinc boinc      4096 Jul 31 15:00 pilot3
[2025-10-11 22:01:00] -rw-r--r-- 1 boinc boinc    552446 Oct  4 13:03 pilot3.tar.gz
[2025-10-11 22:01:00] -rwx------ 1 boinc boinc     36292 Oct  4 13:22 runpilot2-wrapper.sh
[2025-10-11 22:01:00] -rw-r--r-- 1 boinc boinc      5112 Oct  4 13:22 queuedata.json
[2025-10-11 22:01:00] -rw-r--r-- 1 boinc boinc       100 Oct 11 16:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 22:01:00] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 16:47 run_atlas
[2025-10-11 22:01:00] -rw-r--r-- 1 boinc boinc       105 Oct 11 16:47 job.xml
[2025-10-11 22:01:00] -rw-r--r-- 3 boinc boinc 213239013 Oct 11 16:47 EVNT.46376901._002097.pool.root.1
[2025-10-11 22:01:00] -rw-r--r-- 3 boinc boinc 213239013 Oct 11 16:47 ATLAS.root_0
[2025-10-11 22:01:00] drwxrwx--x 2 boinc boinc      4096 Oct 11 16:47 shared
[2025-10-11 22:01:00] -rw-r--r-- 2 boinc boinc    565594 Oct 11 16:47 input.tar.gz
[2025-10-11 22:01:00] -rw-r--r-- 2 boinc boinc     15120 Oct 11 16:47 start_atlas.sh
[2025-10-11 22:01:00] -rw-r--r-- 1 boinc boinc         0 Oct 11 16:47 boinc_lockfile
[2025-10-11 22:01:00] -rw-r--r-- 1 boinc boinc      6692 Oct 11 19:27 init_data.xml
[2025-10-11 22:01:00] -rw-r--r-- 1 boinc boinc      2519 Oct 11 19:27 pandaJob.out
[2025-10-11 22:01:00] -rw------- 1 boinc boinc    975520 Oct 11 19:27 agis_schedconf.cvmfs.json
[2025-10-11 22:01:00] -rw------- 1 boinc boinc 173299084 Oct 11 21:40 HITS.46376905._058441.pool.root.1
[2025-10-11 22:01:00] -rw-r--r-- 1 boinc boinc       529 Oct 11 21:40 boinc_task_state.xml
[2025-10-11 22:01:00] -rw------- 1 boinc boinc      1024 Oct 11 21:41 memory_monitor_summary.json
[2025-10-11 22:01:00] -rw------- 1 boinc boinc   1560580 Oct 11 21:41 agis_ddmendpoints.agis.ALL.json
[2025-10-11 22:01:00] -rw------- 1 boinc boinc    317372 Oct 11 21:41 log.46376905._058441.job.log.tgz.1
[2025-10-11 22:01:00] -rw------- 1 boinc boinc        97 Oct 11 21:41 pilot_heartbeat.json
[2025-10-11 22:01:00] -rw------- 1 boinc boinc      7782 Oct 11 21:41 heartbeat.json
[2025-10-11 22:01:00] -rw------- 1 boinc boinc       823 Oct 11 21:42 pilotlog.txt
[2025-10-11 22:01:00] -rw------- 1 boinc boinc   1130976 Oct 11 21:42 log.46376905._058441.job.log.1
[2025-10-11 22:01:00] -rw------- 1 boinc boinc       357 Oct 11 21:42 output.list
[2025-10-11 22:01:00] -rw-r--r-- 1 boinc boinc       620 Oct 11 21:42 runtime_log
[2025-10-11 22:01:00] -rw------- 1 boinc boinc   1464320 Oct 11 21:42 result.tar.gz
[2025-10-11 22:01:00] -rw-r--r-- 1 boinc boinc      9146 Oct 11 21:42 runtime_log.err
[2025-10-11 22:01:00] -rw------- 1 boinc boinc       787 Oct 11 21:42 LzhLDmtWFP8n9Rq4apOajLDm4fhM0noT9bVof3QYDmNRDMDmlLVEen.diag
[2025-10-11 22:01:00] -rw-r--r-- 1 boinc boinc        26 Oct 11 22:00 wrapper_checkpoint.txt
[2025-10-11 22:01:00] -rw-r--r-- 1 boinc boinc      8192 Oct 11 22:00 boinc_mmap_file
[2025-10-11 22:01:00] -rw-r--r-- 1 boinc boinc     22705 Oct 11 22:01 stderr.txt
[2025-10-11 22:01:00] HITS file was successfully produced:
[2025-10-11 22:01:00] -rw------- 1 boinc boinc 173299084 Oct 11 21:40 shared/HITS.pool.root.1
[2025-10-11 22:01:00]  *** Contents of shared directory: ***
[2025-10-11 22:01:00] total 379496
[2025-10-11 22:01:00] -rw-r--r-- 3 boinc boinc 213239013 Oct 11 16:47 ATLAS.root_0
[2025-10-11 22:01:00] -rw-r--r-- 2 boinc boinc    565594 Oct 11 16:47 input.tar.gz
[2025-10-11 22:01:00] -rw-r--r-- 2 boinc boinc     15120 Oct 11 16:47 start_atlas.sh
[2025-10-11 22:01:00] -rw------- 1 boinc boinc 173299084 Oct 11 21:40 HITS.pool.root.1
[2025-10-11 22:01:00] -rw------- 1 boinc boinc   1464320 Oct 11 21:42 result.tar.gz
22:01:01 (3552417): run_atlas exited; CPU time 31224.676581
22:01:01 (3552417): called boinc_finish(0)

</stderr_txt>
]]>

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