Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-11 20:22:58 (15070): vboxwrapper version 26210
2025-10-11 20:22:58 (15070): BOINC client version: 7.18.1
2025-10-11 20:22:58 (15070): Detected: VirtualBox VboxManage Interface (Version: 7.1.12)
2025-10-11 20:22:58 (15070): Successfully copied 'init_data.xml' to the shared directory.
2025-10-11 20:22:58 (15070): Create VM. (boinc_92c29d3750d03072, slot#2)
2025-10-11 20:22:58 (15070): Setting Memory Size for VM. (4800MB)
2025-10-11 20:22:58 (15070): Setting CPU Count for VM. (8)
2025-10-11 20:22:58 (15070): Setting Chipset Options for VM.
2025-10-11 20:22:59 (15070): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-11 20:22:59 (15070): Setting Boot Options for VM.
2025-10-11 20:22:59 (15070): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-11 20:22:59 (15070): Enabling VM Network Access.
2025-10-11 20:22:59 (15070): Disabling USB Support for VM.
2025-10-11 20:22:59 (15070): Disabling COM Port Support for VM.
2025-10-11 20:23:00 (15070): Disabling LPT Port Support for VM.
2025-10-11 20:23:00 (15070): Disabling Audio Support for VM.
2025-10-11 20:23:00 (15070): Disabling Clipboard Support for VM.
2025-10-11 20:23:00 (15070): Disabling Drag and Drop Support for VM.
2025-10-11 20:23:00 (15070): Adding storage controller(s) to VM.
2025-10-11 20:23:00 (15070): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-11 20:23:01 (15070): Adding VirtualBox Guest Additions to VM.
2025-10-11 20:23:01 (15070): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-11 20:23:01 (15070): forwarding host port 60319 to guest port 80
2025-10-11 20:23:01 (15070): Enabling remote desktop for VM.
2025-10-11 20:23:02 (15070): Required extension pack not installed, remote desktop not enabled.
2025-10-11 20:23:02 (15070): Enabling shared directory for VM.
2025-10-11 20:23:02 (15070): Starting VM using VBoxManage interface. (boinc_92c29d3750d03072, slot#2)
2025-10-11 20:23:03 (15070): Successfully started VM. (PID = '15652')
2025-10-11 20:23:03 (15070): Reporting VM Process ID to BOINC.
2025-10-11 20:23:03 (15070): Guest Log: BIOS: VirtualBox 7.1.12
2025-10-11 20:23:03 (15070): Guest Log: CPUID EDX: 0x178bfbff
2025-10-11 20:23:03 (15070): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-11 20:23:03 (15070): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-11 20:23:03 (15070): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-11 20:23:03 (15070): Detected: Web Application Enabled (http://localhost:60319)
2025-10-11 20:23:03 (15070): Preference change detected
2025-10-11 20:23:03 (15070): Setting CPU throttle for VM. (100%)
2025-10-11 20:23:03 (15070): Setting network throttle for VM. (100KB)
2025-10-11 20:23:03 (15070): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-11 20:23:05 (15070): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-11 20:23:05 (15070): Guest Log: BIOS: Booting from Hard Disk...
2025-10-11 20:23:08 (15070): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-11 20:23:08 (15070): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-11 20:23:08 (15070): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-11 20:23:08 (15070): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-11 20:23:08 (15070): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-11 20:23:08 (15070): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-11 20:23:08 (15070): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-11 20:23:08 (15070): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-11 20:23:08 (15070): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-11 20:23:08 (15070): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-11 20:23:08 (15070): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-11 20:23:08 (15070): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-11 20:23:08 (15070): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-11 20:23:08 (15070): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-11 20:23:08 (15070): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-11 20:23:08 (15070): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-11 20:23:08 (15070): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-11 20:23:08 (15070): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-11 20:23:08 (15070): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-11 20:23:08 (15070): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-11 20:23:08 (15070): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-11 20:23:08 (15070): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-11 20:23:08 (15070): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-11 20:23:08 (15070): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-11 20:23:08 (15070): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-11 20:23:08 (15070): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-11 20:23:08 (15070): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-11 20:23:08 (15070): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-11 20:23:08 (15070): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-11 20:23:08 (15070): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-11 20:23:08 (15070): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-11 20:23:08 (15070): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-11 20:23:19 (15070): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-11 20:23:19 (15070): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-11 20:23:37 (15070): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-11 20:23:37 (15070): Guest Log: 00:00:00.000180 main     Log opened 2025-10-11T17:23:35.167431000Z
2025-10-11 20:23:37 (15070): Guest Log: 00:00:00.000269 main     OS Product: Linux
2025-10-11 20:23:37 (15070): Guest Log: 00:00:00.000295 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-11 20:23:37 (15070): Guest Log: 00:00:00.000314 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-11 20:23:37 (15070): Guest Log: 00:00:00.000331 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-11 20:23:37 (15070): Guest Log: 00:00:00.000332 main     Process ID: 1384
2025-10-11 20:23:37 (15070): Guest Log: 00:00:00.000333 main     Package type: LINUX_64BITS_GENERIC
2025-10-11 20:23:37 (15070): Guest Log: 00:00:00.001502 main     5.2.32 r132073 started. Verbose level = 0
2025-10-11 20:23:38 (15070): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-11 20:23:38 (15070): Guest Log: [INFO] Mounting shared directory
2025-10-11 20:23:38 (15070): Guest Log: [INFO] Checking for init_data.xml
2025-10-11 20:23:47 (15070): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-11 20:23:47 (15070): Guest Log: [INFO] Detected branch: prod
2025-10-11 20:23:47 (15070): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-11 20:23:47 (15070): Guest Log: Copying input files
2025-10-11 20:23:48 (15070): Guest Log: Copied input files into RunAtlas.
2025-10-11 20:23:48 (15070): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-11 20:23:48 (15070): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-11 20:23:48 (15070): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-11 20:23:48 (15070): Guest Log: Further information can be found at the LHC@home message board.
2025-10-11 20:24:17 (15070): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-11 20:24:17 (15070): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-11 20:24:17 (15070): Guest Log: 2.6.3.0 1663 0 30164 151591 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-11 20:24:20 (15070): Guest Log: copied the webapp to /var/www
2025-10-11 20:24:20 (15070): Guest Log: ATHENA_PROC_NUMBER=8
2025-10-11 20:24:20 (15070): Guest Log: ATHENA_CORE_NUMBER=8
2025-10-11 20:24:21 (15070): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-11 20:24:21 (15070): Guest Log:  *** Starting ATLAS job. (PandaID=6831457484 taskID=46376905) ***
2025-10-11 21:54:38 (15070): Guest Log:  *** Job finished ***
2025-10-11 21:54:38 (15070): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-11 21:54:38 (15070): Guest Log: 2025-10-11 18:54:27,100 | INFO     | end of generic workflow (traces error code: 0)
2025-10-11 21:54:38 (15070): Guest Log: 2025-10-11 18:54:27,101 | INFO     | traces error code: 0
2025-10-11 21:54:38 (15070): Guest Log: 2025-10-11 18:54:27,101 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-11 21:54:38 (15070): Guest Log: 2025-10-11 18:54:35,542 | INFO     | PID=6088 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-10-11 21:54:38 (15070): Guest Log: 2025-10-11 18:54:35,543 | INFO     | found 0 job(s) in 20 queues
2025-10-11 21:54:38 (15070): Guest Log: 2025-10-11 18:54:35,543 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-11 21:54:38 (15070): Guest Log: 2025-10-11 18:54:35,543 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-11 21:54:38 (15070): Guest Log: 2025-10-11 18:54:35,543 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-11 21:54:38 (15070): Guest Log: 2025-10-11 18:54:35,543 | CRITICAL | thread 'MainThread' is not alive
2025-10-11 21:54:38 (15070): Guest Log: 2025-10-11 18:54:35,543 | INFO     | [monitor] control thread has ended
2025-10-11 21:54:38 (15070): Guest Log: 2025-10-11 18:54:35,665 [wrapper] ==== pilot stdout END ====
2025-10-11 21:54:38 (15070): Guest Log: 2025-10-11 18:54:35,673 [wrapper] ==== wrapper stdout RESUME ====
2025-10-11 21:54:38 (15070): Guest Log: 2025-10-11 18:54:35,681 [wrapper] pilotpid: 6088
2025-10-11 21:54:38 (15070): Guest Log: 2025-10-11 18:54:35,688 [wrapper] Pilot exit status: 0
2025-10-11 21:54:38 (15070): Guest Log: 2025-10-11 18:54:35,798 [wrapper] pandaids: 6831457484
2025-10-11 21:54:38 (15070): Guest Log: 2025-10-11 18:54:35,845 [wrapper] cleanup supervisor_pilot  2009 6089
2025-10-11 21:54:38 (15070): Guest Log: 2025-10-11 18:54:35,853 [wrapper] Test setup, not cleaning
2025-10-11 21:54:38 (15070): Guest Log: 2025-10-11 18:54:35,862 [wrapper] apfmon messages muted
2025-10-11 21:54:38 (15070): Guest Log: 2025-10-11 18:54:35,870 [wrapper] ==== wrapper stdout END ====
2025-10-11 21:54:38 (15070): Guest Log: 2025-10-11 18:54:35,879 [wrapper] ==== wrapper stderr END ====
2025-10-11 21:54:38 (15070): Guest Log:  *** Error codes and diagnostics ***
2025-10-11 21:54:38 (15070): Guest Log:     "exeErrorCode": 0,
2025-10-11 21:54:38 (15070): Guest Log:     "exeErrorDiag": "",
2025-10-11 21:54:38 (15070): Guest Log:     "pilotErrorCode": 0,
2025-10-11 21:54:38 (15070): Guest Log:     "pilotErrorDiag": "",
2025-10-11 21:54:38 (15070): Guest Log:  *** Listing of results directory ***
2025-10-11 21:54:38 (15070): Guest Log: total 176788
2025-10-11 21:54:38 (15070): Guest Log: -rw-r--r--. 1 atlas atlas    563267 Aug  1 09:52 pilot3.tar.gz
2025-10-11 21:54:38 (15070): Guest Log: -rwx------. 1 atlas atlas     36292 Oct  5 12:59 runpilot2-wrapper.sh
2025-10-11 21:54:38 (15070): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct  5 12:59 queuedata.json
2025-10-11 21:54:38 (15070): Guest Log: -rw-r--r--. 1 atlas atlas      9201 Oct 11 17:23 init_data.xml
2025-10-11 21:54:38 (15070): Guest Log: -rw-r--r--. 1 atlas atlas    576692 Oct 11 17:23 input.tar.gz
2025-10-11 21:54:38 (15070): Guest Log: -rw-r--r--. 1 atlas atlas     15120 Oct 11 17:23 start_atlas.sh
2025-10-11 21:54:38 (15070): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 11 17:23 EVNT.46376901._003123.pool.root.1 -> /data/./ATLAS.root_0
2025-10-11 21:54:38 (15070): Guest Log: -rw-r--r--. 1 atlas atlas      2519 Oct 11 17:24 pandaJob.out
2025-10-11 21:54:38 (15070): Guest Log: -rw-------. 1 atlas atlas    975520 Oct 11 17:25 agis_schedconf.cvmfs.json
2025-10-11 21:54:38 (15070): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 11 17:25 agis_ddmendpoints.agis.ALL.json
2025-10-11 21:54:38 (15070): Guest Log: drwx------. 4 atlas atlas      4096 Oct 11 17:25 pilot3
2025-10-11 21:54:38 (15070): Guest Log: -rw-------. 1 atlas atlas 175107865 Oct 11 18:53 HITS.46376905._085034.pool.root.1
2025-10-11 21:54:38 (15070): Guest Log: -rw-------. 1 atlas atlas      1029 Oct 11 18:53 memory_monitor_summary.json
2025-10-11 21:54:38 (15070): Guest Log: -rw-------. 1 atlas atlas    323444 Oct 11 18:53 log.46376905._085034.job.log.tgz.1
2025-10-11 21:54:38 (15070): Guest Log: -rw-------. 1 atlas atlas      7788 Oct 11 18:54 heartbeat.json
2025-10-11 21:54:38 (15070): Guest Log: -rw-------. 1 atlas atlas       814 Oct 11 18:54 pilotlog.txt
2025-10-11 21:54:38 (15070): Guest Log: -rw-------. 1 atlas atlas        95 Oct 11 18:54 pilot_heartbeat.json
2025-10-11 21:54:38 (15070): Guest Log: -rw-------. 1 atlas atlas    720214 Oct 11 18:54 log.46376905._085034.job.log.1
2025-10-11 21:54:38 (15070): Guest Log: -rw-------. 1 atlas atlas       357 Oct 11 18:54 output.list
2025-10-11 21:54:38 (15070): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 11 18:54 runtime_log
2025-10-11 21:54:38 (15070): Guest Log: -rw-------. 1 atlas atlas   1064960 Oct 11 18:54 result.tar.gz
2025-10-11 21:54:38 (15070): Guest Log: -rw-r--r--. 1 atlas atlas      8629 Oct 11 18:54 runtime_log.err
2025-10-11 21:54:38 (15070): Guest Log: -rw-------. 1 atlas atlas       654 Oct 11 18:54 pu6NDmfVdP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmQOPNDmRN0ywn.diag
2025-10-11 21:54:38 (15070): Guest Log: Looking for outputfile HITS.46376905._085034.pool.root.1
2025-10-11 21:54:38 (15070): Guest Log: HITS file was successfully produced
2025-10-11 21:54:38 (15070): Guest Log: -rw-------. 1 atlas atlas 175107865 Oct 11 18:53 /home/atlas/RunAtlas/HITS.46376905._085034.pool.root.1
2025-10-11 21:54:39 (15070): Guest Log: Successfully finished the ATLAS job!
2025-10-11 21:54:39 (15070): Guest Log: Copying the results back to the shared directory!
2025-10-11 21:54:39 (15070): Guest Log:  *** Contents of shared directory: ***
2025-10-11 21:54:39 (15070): Guest Log: total 210716
2025-10-11 21:54:39 (15070): Guest Log: -rw-r--r--. 1 root root 214097308 Oct 11 17:22 ATLAS.root_0
2025-10-11 21:54:39 (15070): Guest Log: -rw-r--r--. 1 root root      9201 Oct 11 17:22 init_data.xml
2025-10-11 21:54:39 (15070): Guest Log: -rw-r--r--. 1 root root    576692 Oct 11 17:22 input.tar.gz
2025-10-11 21:54:39 (15070): Guest Log: -rw-r--r--. 1 root root   1064960 Oct 11 18:54 result.tar.gz
2025-10-11 21:54:39 (15070): Guest Log: -rw-r--r--. 1 root root     15120 Oct 11 17:22 start_atlas.sh
2025-10-11 21:54:39 (15070): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-11 21:54:39 (15070): VM Completion File Detected.
2025-10-11 21:54:39 (15070): Powering off VM.
2025-10-11 21:54:40 (15070): Successfully stopped VM.
2025-10-11 21:54:40 (15070): Deregistering VM. (boinc_92c29d3750d03072, slot#2)
2025-10-11 21:54:40 (15070): Removing network bandwidth throttle group from VM.
2025-10-11 21:54:40 (15070): Removing VM from VirtualBox.
2025-10-11 21:54:45 (15070): called boinc_finish(0)

</stderr_txt>
]]>

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