Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:13:47 (10289): wrapper (7.7.26015): starting
11:13:47 (10289): wrapper: running run_atlas (--nthreads 8)
[2025-10-06 11:13:47] Arguments: --nthreads 8
[2025-10-06 11:13:47] Threads: 8
[2025-10-06 11:13:47] Checking for CVMFS
[2025-10-06 11:13:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-06 11:13:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-06 11:13:49] Running cvmfs_config stat atlas.cern.ch
[2025-10-06 11:13:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-06 11:13:50] 2.11.2.0 23903 9713 81576 151392 0 61 23293865 25165825 4682 130560 0 3025665 99.969 565804 745 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-06 11:13:50] CVMFS is ok
[2025-10-06 11:13:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-06 11:13:50] Checking for apptainer binary...
[2025-10-06 11:13:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-06 11:13:50] Running /usr/bin/apptainer --version
[2025-10-06 11:13:50] apptainer version 1.3.2-1.el7
[2025-10-06 11:13:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-06 11:14:13] cg-vwn444.simple-grid.lan
[2025-10-06 11:14:13] apptainer works
[2025-10-06 11:14:13] Set ATHENA_PROC_NUMBER=8
[2025-10-06 11:14:13] Set ATHENA_CORE_NUMBER=8
[2025-10-06 11:14:14] Starting ATLAS job with PandaID=6831073685
[2025-10-06 11:14:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-06 15:28:20]  *** The last 200 lines of the pilot log: ***
[2025-10-06 15:28:21] 2025-10-06 13:27:38,179 | INFO     | sum of deviations: 97931591364.00002
[2025-10-06 15:28:21] 2025-10-06 13:27:38,179 | INFO     | mean x: 1759749745.0
[2025-10-06 15:28:21] 2025-10-06 13:27:38,179 | INFO     | mean y: 2446000.407725322
[2025-10-06 15:28:21] 2025-10-06 13:27:38,179 | INFO     | -- intersect: -43935073527.281494
[2025-10-06 15:28:21] 2025-10-06 13:27:38,179 | INFO     | intersect: -43935073527.281494
[2025-10-06 15:28:21] 2025-10-06 13:27:38,179 | INFO     | chi2: 7.8288567499892405
[2025-10-06 15:28:21] 2025-10-06 13:27:38,180 | INFO     | current chi2=7.8288567499892405 (change=-0.19571542754676968 %)
[2025-10-06 15:28:21] 2025-10-06 13:27:38,180 | INFO     | right removable region: 232
[2025-10-06 15:28:21] 2025-10-06 13:27:38,180 | INFO     | sum of square deviations: 3922276332.0
[2025-10-06 15:28:21] 2025-10-06 13:27:38,182 | INFO     | sum of deviations: 16710289430.99999
[2025-10-06 15:28:21] 2025-10-06 13:27:38,182 | INFO     | mean x: 1759750050.0
[2025-10-06 15:28:21] 2025-10-06 13:27:38,182 | INFO     | mean y: 2496655.9055793993
[2025-10-06 15:28:21] 2025-10-06 13:27:38,182 | INFO     | -- intersect: -7494663200.427741
[2025-10-06 15:28:21] 2025-10-06 13:27:38,182 | INFO     | intersect: -7494663200.427741
[2025-10-06 15:28:21] 2025-10-06 13:27:38,183 | INFO     | chi2: 2.6573205853507105
[2025-10-06 15:28:21] 2025-10-06 13:27:38,183 | INFO     | current chi2=2.6573205853507105 (change=65.99093000776547 %)
[2025-10-06 15:28:21] 2025-10-06 13:27:38,183 | INFO     | sum of square deviations: 3675146117.0
[2025-10-06 15:28:21] 2025-10-06 13:27:38,185 | INFO     | sum of deviations: -40191815450.5
[2025-10-06 15:28:21] 2025-10-06 13:27:38,185 | INFO     | mean x: 1759750202.5
[2025-10-06 15:28:21] 2025-10-06 13:27:38,186 | INFO     | mean y: 2531674.486842105
[2025-10-06 15:28:21] 2025-10-06 13:27:38,186 | INFO     | -- intersect: 19247359805.455006
[2025-10-06 15:28:21] 2025-10-06 13:27:38,186 | INFO     | intersect: 19247359805.455006
[2025-10-06 15:28:21] 2025-10-06 13:27:38,186 | INFO     | chi2: 0.2971253374582307
[2025-10-06 15:28:21] 2025-10-06 13:27:38,186 | INFO     | current chi2=0.2971253374582307 (change=88.8186115331276 %)
[2025-10-06 15:28:21] 2025-10-06 13:27:38,187 | INFO     | sum of square deviations: 3438620752.0
[2025-10-06 15:28:21] 2025-10-06 13:27:38,195 | INFO     | sum of deviations: -47046483264.00001
[2025-10-06 15:28:21] 2025-10-06 13:27:38,195 | INFO     | mean x: 1759750355.0
[2025-10-06 15:28:21] 2025-10-06 13:27:38,195 | INFO     | mean y: 2536033.125560538
[2025-10-06 15:28:21] 2025-10-06 13:27:38,195 | INFO     | -- intersect: 24079068921.25302
[2025-10-06 15:28:21] 2025-10-06 13:27:38,195 | INFO     | intersect: 24079068921.25302
[2025-10-06 15:28:21] 2025-10-06 13:27:38,196 | INFO     | chi2: 0.1991990026246138
[2025-10-06 15:28:21] 2025-10-06 13:27:38,196 | INFO     | current chi2=0.1991990026246138 (change=32.95792128376908 %)
[2025-10-06 15:28:21] 2025-10-06 13:27:38,196 | INFO     | sum of square deviations: 3212467674.5
[2025-10-06 15:28:21] 2025-10-06 13:27:38,198 | INFO     | sum of deviations: -41414736313.50001
[2025-10-06 15:28:21] 2025-10-06 13:27:38,198 | INFO     | mean x: 1759750507.5
[2025-10-06 15:28:21] 2025-10-06 13:27:38,198 | INFO     | mean y: 2532231.9770642202
[2025-10-06 15:28:21] 2025-10-06 13:27:38,198 | INFO     | -- intersect: 22689018332.41808
[2025-10-06 15:28:21] 2025-10-06 13:27:38,198 | INFO     | intersect: 22689018332.41808
[2025-10-06 15:28:21] 2025-10-06 13:27:38,199 | INFO     | chi2: 0.1949845727555594
[2025-10-06 15:28:21] 2025-10-06 13:27:38,199 | INFO     | current chi2=0.1949845727555594 (change=2.1156882381566966 %)
[2025-10-06 15:28:21] 2025-10-06 13:27:38,199 | INFO     | left removable region: 40
[2025-10-06 15:28:21] 2025-10-06 13:27:38,199 | INFO     | sum of square deviations: 2194675568.0
[2025-10-06 15:28:21] 2025-10-06 13:27:38,201 | INFO     | sum of deviations: -12102389385.999998
[2025-10-06 15:28:21] 2025-10-06 13:27:38,201 | INFO     | mean x: 1759750934.5
[2025-10-06 15:28:21] 2025-10-06 13:27:38,201 | INFO     | mean y: 2509965.3020833335
[2025-10-06 15:28:21] 2025-10-06 13:27:38,201 | INFO     | -- intersect: 9706536994.274038
[2025-10-06 15:28:21] 2025-10-06 13:27:38,201 | INFO     | intersect: 9706536994.274038
[2025-10-06 15:28:21] 2025-10-06 13:27:38,202 | INFO     | chi2: 0.10687332677443974
[2025-10-06 15:28:21] 2025-10-06 13:27:38,202 | INFO     | -- intersect: 9706536994.274038
[2025-10-06 15:28:21] 2025-10-06 13:27:38,202 | INFO     | current memory leak: -5.51 B/s (using 192 data points, chi2=0.11)
[2025-10-06 15:28:21] 2025-10-06 13:27:38,202 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-10-06 15:28:21] 2025-10-06 13:27:38,203 | INFO     | ..............................
[2025-10-06 15:28:21] 2025-10-06 13:27:38,203 | INFO     | . Timing measurements:
[2025-10-06 15:28:21] 2025-10-06 13:27:38,203 | INFO     | . get job = 0 s
[2025-10-06 15:28:21] 2025-10-06 13:27:38,203 | INFO     | . initial setup = 7 s
[2025-10-06 15:28:21] 2025-10-06 13:27:38,203 | INFO     | . payload setup = 99 s
[2025-10-06 15:28:21] 2025-10-06 13:27:38,203 | INFO     | . stage-in = 0 s
[2025-10-06 15:28:21] 2025-10-06 13:27:38,203 | INFO     | . payload execution = 14645 s
[2025-10-06 15:28:21] 2025-10-06 13:27:38,203 | INFO     | . stage-out = 3 s
[2025-10-06 15:28:21] 2025-10-06 13:27:38,203 | INFO     | . log creation = 1 s
[2025-10-06 15:28:21] 2025-10-06 13:27:38,204 | INFO     | ..............................
[2025-10-06 15:28:21] 2025-10-06 13:27:38,255 | INFO     | time since job start (14992s) is within the limit (172800.0s)
[2025-10-06 15:28:21] 2025-10-06 13:27:38,343 | INFO     | 
[2025-10-06 15:28:21] 2025-10-06 13:27:38,343 | INFO     | job summary report
[2025-10-06 15:28:21] 2025-10-06 13:27:38,343 | INFO     | --------------------------------------------------
[2025-10-06 15:28:21] 2025-10-06 13:27:38,343 | INFO     | PanDA job id: 6831073685
[2025-10-06 15:28:21] 2025-10-06 13:27:38,343 | INFO     | task id: 46376905
[2025-10-06 15:28:21] 2025-10-06 13:27:38,343 | INFO     | errors: (none)
[2025-10-06 15:28:21] 2025-10-06 13:27:38,343 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-06 15:28:21] 2025-10-06 13:27:38,343 | INFO     | pilot state: finished 
[2025-10-06 15:28:21] 2025-10-06 13:27:38,344 | INFO     | transexitcode: 0
[2025-10-06 15:28:21] 2025-10-06 13:27:38,344 | INFO     | exeerrorcode: 0
[2025-10-06 15:28:21] 2025-10-06 13:27:38,344 | INFO     | exeerrordiag: 
[2025-10-06 15:28:21] 2025-10-06 13:27:38,344 | INFO     | exitcode: 0
[2025-10-06 15:28:21] 2025-10-06 13:27:38,344 | INFO     | exitmsg: OK
[2025-10-06 15:28:21] 2025-10-06 13:27:38,344 | INFO     | cpuconsumptiontime: 49864 s
[2025-10-06 15:28:21] 2025-10-06 13:27:38,344 | INFO     | nevents: 400
[2025-10-06 15:28:21] 2025-10-06 13:27:38,344 | INFO     | neventsw: 0
[2025-10-06 15:28:21] 2025-10-06 13:27:38,344 | INFO     | pid: 20648
[2025-10-06 15:28:21] 2025-10-06 13:27:38,345 | INFO     | pgrp: 20648
[2025-10-06 15:28:21] 2025-10-06 13:27:38,345 | INFO     | corecount: 8
[2025-10-06 15:28:21] 2025-10-06 13:27:38,345 | INFO     | event service: False
[2025-10-06 15:28:21] 2025-10-06 13:27:38,345 | INFO     | sizes: {0: 2348592, 1: 2348620, 2: 2348620, 12: 2348791, 23: 2348819, 34: 2348847, 45: 2349003, 55: 2349031, 66: 2349059, 77: 2349087, 80: 2349405, 88: 2349713, 14
[2025-10-06 15:28:21] 2025-10-06 13:27:38,345 | INFO     | --------------------------------------------------
[2025-10-06 15:28:21] 2025-10-06 13:27:38,345 | INFO     | 
[2025-10-06 15:28:21] 2025-10-06 13:27:38,345 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-10-06 15:28:21] 2025-10-06 13:27:38,745 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-06 15:28:21] 2025-10-06 13:27:38,745 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-06 15:28:21] 2025-10-06 13:27:38,746 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-06 15:28:21] 2025-10-06 13:27:38,746 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-06 15:28:21] 2025-10-06 13:27:38,746 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-06 15:28:21] 2025-10-06 13:27:38,746 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-06 15:28:21] 2025-10-06 13:27:38,746 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-06 15:28:21] 2025-10-06 13:27:38,746 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-06 15:28:21] 2025-10-06 13:27:38,746 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-06 15:28:21] 2025-10-06 13:27:38,746 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-06 15:28:21] 2025-10-06 13:27:38,746 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-06 15:28:21] 2025-10-06 13:27:38,746 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-06 15:28:21] 2025-10-06 13:27:38,746 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-06 15:28:21] 2025-10-06 13:27:38,747 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-06 15:28:21] 2025-10-06 13:27:38,747 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-06 15:28:21] 2025-10-06 13:27:38,747 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-06 15:28:21] 2025-10-06 13:27:38,747 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-06 15:28:21] 2025-10-06 13:27:38,747 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-06 15:28:21] 2025-10-06 13:27:38,747 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-06 15:28:21] 2025-10-06 13:27:38,747 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-06 15:28:21] 2025-10-06 13:27:38,747 | INFO     | job 6831073685 has completed (purged errors)
[2025-10-06 15:28:21] 2025-10-06 13:27:38,747 | INFO     | overall cleanup function is called
[2025-10-06 15:28:21] 2025-10-06 13:27:39,764 | INFO     | --- collectZombieJob: --- 10, [20648]
[2025-10-06 15:28:21] 2025-10-06 13:27:39,764 | INFO     | zombie collector waiting for pid 20648
[2025-10-06 15:28:21] 2025-10-06 13:27:39,764 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-06 15:28:21] 2025-10-06 13:27:39,764 | INFO     | collected zombie processes
[2025-10-06 15:28:21] 2025-10-06 13:27:39,764 | INFO     | will attempt to kill all subprocesses of pid=20648
[2025-10-06 15:28:21] 2025-10-06 13:27:39,938 | INFO     | process IDs to be killed: [20648] (in reverse order)
[2025-10-06 15:28:21] 2025-10-06 13:27:40,206 | WARNING  | found no corresponding commands to process id(s)
[2025-10-06 15:28:21] 2025-10-06 13:27:40,207 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-06 15:28:21] 2025-10-06 13:27:40,210 | INFO     | did not find any defunct processes belonging to 20648
[2025-10-06 15:28:21] 2025-10-06 13:27:40,213 | INFO     | did not find any defunct processes belonging to 20648
[2025-10-06 15:28:21] 2025-10-06 13:27:40,214 | INFO     | ready for new job
[2025-10-06 15:28:21] 2025-10-06 13:27:40,214 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-06 15:28:21] 2025-10-06 13:27:40,221 | INFO     | ***************************************
[2025-10-06 15:28:21] 2025-10-06 13:27:40,222 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-06 15:28:21] 2025-10-06 13:27:40,222 | INFO     | ***************************************
[2025-10-06 15:28:21] 2025-10-06 13:27:40,222 | INFO     | 
[2025-10-06 15:28:21] 2025-10-06 13:27:40,222 | INFO     | pilot is running in a VM
[2025-10-06 15:28:21] 2025-10-06 13:27:40,222 | INFO     | architecture information:
[2025-10-06 15:28:21] 2025-10-06 13:27:40,230 | INFO     | executing command: cat /etc/os-release
[2025-10-06 15:28:21] 2025-10-06 13:27:40,347 | INFO     | cat /etc/os-release:
[2025-10-06 15:28:21] NAME="CentOS Linux"
[2025-10-06 15:28:21] VERSION="7 (Core)"
[2025-10-06 15:28:21] ID="centos"
[2025-10-06 15:28:21] ID_LIKE="rhel fedora"
[2025-10-06 15:28:21] VERSION_ID="7"
[2025-10-06 15:28:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-06 15:28:21] ANSI_COLOR="0;31"
[2025-10-06 15:28:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-06 15:28:21] HOME_URL="https://www.centos.org/"
[2025-10-06 15:28:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-06 15:28:21] 
[2025-10-06 15:28:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-06 15:28:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-06 15:28:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-06 15:28:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-06 15:28:21] 
[2025-10-06 15:28:21] 2025-10-06 13:27:40,347 | INFO     | ***************************************
[2025-10-06 15:28:21] 2025-10-06 13:27:40,851 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-10-06 15:28:21] 2025-10-06 13:27:40,950 | INFO     | sufficient remaining disk space (495249784832 B)
[2025-10-06 15:28:21] 2025-10-06 13:27:40,951 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-06 15:28:21] 2025-10-06 13:27:40,951 | INFO     | current server update state: UPDATING_FINAL
[2025-10-06 15:28:21] 2025-10-06 13:27:40,951 | INFO     | update_server=False
[2025-10-06 15:28:21] 2025-10-06 13:27:40,951 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-06 15:28:21] 2025-10-06 13:27:40,952 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-06 15:28:21] 2025-10-06 13:27:41,006 | INFO     | all data control threads have been joined
[2025-10-06 15:28:21] 2025-10-06 13:27:41,321 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-06 15:28:21] 2025-10-06 13:27:41,321 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-06 15:28:21] 2025-10-06 13:27:41,321 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-06 15:28:21] 2025-10-06 13:27:41,321 | INFO     | will abort loop
[2025-10-06 15:28:21] 2025-10-06 13:27:41,338 | INFO     | all payload control threads have been joined
[2025-10-06 15:28:21] 2025-10-06 13:27:41,492 | INFO     | all job control threads have been joined
[2025-10-06 15:28:21] 2025-10-06 13:27:41,957 | INFO     | [job] retrieve thread has finished
[2025-10-06 15:28:21] 2025-10-06 13:27:42,011 | INFO     | [data] control thread has finished
[2025-10-06 15:28:21] 2025-10-06 13:27:42,326 | INFO     | [job] job monitor thread has finished
[2025-10-06 15:28:21] 2025-10-06 13:27:42,344 | INFO     | [payload] control thread has finished
[2025-10-06 15:28:21] 2025-10-06 13:27:42,431 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-06 15:28:21] 2025-10-06 13:27:42,498 | INFO     | [job] control thread has finished
[2025-10-06 15:28:21] 2025-10-06 13:27:42,667 | INFO     | [payload] execute_payloads thread has finished
[2025-10-06 15:28:21] 2025-10-06 13:27:42,737 | INFO     | [payload] validate_post thread has finished
[2025-10-06 15:28:21] 2025-10-06 13:27:42,795 | INFO     | [data] copytool_in thread has finished
[2025-10-06 15:28:21] 2025-10-06 13:27:42,923 | INFO     | [payload] validate_pre thread has finished
[2025-10-06 15:28:21] 2025-10-06 13:27:42,960 | INFO     | [data] copytool_out thread has finished
[2025-10-06 15:28:21] 2025-10-06 13:27:43,265 | INFO     | [job] create_data_payload thread has finished
[2025-10-06 15:28:21] 2025-10-06 13:27:43,292 | INFO     | [job] validate thread has finished
[2025-10-06 15:28:21] 2025-10-06 13:27:43,363 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-06 15:28:21] 2025-10-06 13:27:43,465 | INFO     | [payload] failed_post thread has finished
[2025-10-06 15:28:21] 2025-10-06 13:27:43,746 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-06 15:28:21] 2025-10-06 13:27:44,369 | INFO     | [job] queue monitor thread has finished
[2025-10-06 15:28:21] 2025-10-06 13:27:47,755 | INFO     | [data] queue_monitor thread has finished
[2025-10-06 15:28:21] 2025-10-06 13:28:11,527 | INFO     | PID=14122 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-06 15:28:21] 2025-10-06 13:28:11,527 | INFO     | .. there are 9 such processes running
[2025-10-06 15:28:21] 2025-10-06 13:28:11,528 | INFO     | found 0 job(s) in 20 queues
[2025-10-06 15:28:21] 2025-10-06 13:28:11,528 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-06 15:28:21] 2025-10-06 13:28:11,528 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-06 15:28:21] 2025-10-06 13:28:12,109 | INFO     | [monitor] cgroup control has ended
[2025-10-06 15:28:21] 2025-10-06 13:28:13,675 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140082078721856)>', '<ExcThread(monitor, started 140081474029312)>']
[2025-10-06 15:28:21] 2025-10-06 13:28:14,544 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-06 15:28:21] 2025-10-06 13:28:14,544 | INFO     | [monitor] control thread has ended
[2025-10-06 15:28:21] 2025-10-06 13:28:18,700 | INFO     | all workflow threads have been joined
[2025-10-06 15:28:21] 2025-10-06 13:28:18,700 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-06 15:28:21] 2025-10-06 13:28:18,700 | INFO     | traces error code: 0
[2025-10-06 15:28:21] 2025-10-06 13:28:18,701 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-06 15:28:21] 2025-10-06 13:28:18,995 [wrapper] ==== pilot stdout END ====
[2025-10-06 15:28:21] 2025-10-06 13:28:19,044 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-06 15:28:21] 2025-10-06 13:28:19,081 [wrapper] pilotpid: 14122
[2025-10-06 15:28:21] 2025-10-06 13:28:19,135 [wrapper] Pilot exit status: 0
[2025-10-06 15:28:21] 2025-10-06 13:28:19,363 [wrapper] pandaids: 6831073685
[2025-10-06 15:28:21] 2025-10-06 13:28:19,803 [wrapper] cleanup supervisor_pilot 13287 14123
[2025-10-06 15:28:21] 2025-10-06 13:28:19,933 [wrapper] Test setup, not cleaning
[2025-10-06 15:28:21] 2025-10-06 13:28:19,965 [wrapper] apfmon messages muted
[2025-10-06 15:28:21] 2025-10-06 13:28:19,990 [wrapper] ==== wrapper stdout END ====
[2025-10-06 15:28:21] 2025-10-06 13:28:20,034 [wrapper] ==== wrapper stderr END ====
[2025-10-06 15:28:21]  *** Error codes and diagnostics ***
[2025-10-06 15:28:21]     "exeErrorCode": 0,
[2025-10-06 15:28:21]     "exeErrorDiag": "",
[2025-10-06 15:28:21]     "pilotErrorCode": 0,
[2025-10-06 15:28:21]     "pilotErrorDiag": "",
[2025-10-06 15:28:21]  *** Listing of results directory ***
[2025-10-06 15:28:21] total 396216
[2025-10-06 15:28:21] -rw-r--r--. 1 boinc boinc    552446 Oct  5 08:43 pilot3.tar.gz
[2025-10-06 15:28:21] -rwx------. 1 boinc boinc     36292 Oct  5 08:46 runpilot2-wrapper.sh
[2025-10-06 15:28:21] -rw-r--r--. 1 boinc boinc      5112 Oct  5 08:46 queuedata.json
[2025-10-06 15:28:21] -rw-r--r--. 1 boinc boinc       100 Oct  6 11:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-06 15:28:21] -rwxr-xr-x. 1 boinc boinc      7986 Oct  6 11:13 run_atlas
[2025-10-06 15:28:21] -rw-r--r--. 1 boinc boinc       105 Oct  6 11:13 job.xml
[2025-10-06 15:28:21] -rw-r--r--. 2 boinc boinc 212684769 Oct  6 11:13 EVNT.46376901._000836.pool.root.1
[2025-10-06 15:28:21] drwxrwx--x. 2 boinc boinc        68 Oct  6 11:13 shared
[2025-10-06 15:28:21] -rw-r--r--. 2 boinc boinc    565603 Oct  6 11:13 input.tar.gz
[2025-10-06 15:28:21] -rw-r--r--. 2 boinc boinc     15120 Oct  6 11:13 start_atlas.sh
[2025-10-06 15:28:21] -rw-r--r--. 1 boinc boinc         0 Oct  6 11:13 boinc_lockfile
[2025-10-06 15:28:21] -rw-r--r--. 1 boinc boinc      2517 Oct  6 11:14 pandaJob.out
[2025-10-06 15:28:21] -rw-------. 1 boinc boinc    975027 Oct  6 11:17 agis_schedconf.cvmfs.json
[2025-10-06 15:28:21] drwx------. 4 boinc boinc      4096 Oct  6 11:17 pilot3
[2025-10-06 15:28:21] -rw-r--r--. 1 boinc boinc      6398 Oct  6 15:24 init_data.xml
[2025-10-06 15:28:21] -rw-------. 1 boinc boinc 184253625 Oct  6 15:25 HITS.46376905._078256.pool.root.1
[2025-10-06 15:28:21] -rw-r--r--. 1 boinc boinc       531 Oct  6 15:25 boinc_task_state.xml
[2025-10-06 15:28:21] -rw-------. 1 boinc boinc      1018 Oct  6 15:26 memory_monitor_summary.json
[2025-10-06 15:28:21] -rw-------. 1 boinc boinc   1560401 Oct  6 15:26 agis_ddmendpoints.agis.ALL.json
[2025-10-06 15:28:21] -rw-------. 1 boinc boinc    460787 Oct  6 15:26 log.46376905._078256.job.log.tgz.1
[2025-10-06 15:28:21] -rw-------. 1 boinc boinc        95 Oct  6 15:27 pilot_heartbeat.json
[2025-10-06 15:28:21] -rw-------. 1 boinc boinc      7781 Oct  6 15:27 heartbeat.json
[2025-10-06 15:28:21] -rw-r--r--. 1 boinc boinc      8192 Oct  6 15:28 boinc_mmap_file
[2025-10-06 15:28:21] -rw-r--r--. 1 boinc boinc        28 Oct  6 15:28 wrapper_checkpoint.txt
[2025-10-06 15:28:21] -rw-------. 1 boinc boinc      5070 Oct  6 15:28 pilotlog.txt
[2025-10-06 15:28:21] -rw-------. 1 boinc boinc   1996872 Oct  6 15:28 log.46376905._078256.job.log.1
[2025-10-06 15:28:21] -rw-------. 1 boinc boinc       357 Oct  6 15:28 output.list
[2025-10-06 15:28:21] -rw-r--r--. 1 boinc boinc       620 Oct  6 15:28 runtime_log
[2025-10-06 15:28:21] -rw-------. 1 boinc boinc   2478080 Oct  6 15:28 result.tar.gz
[2025-10-06 15:28:21] -rw-------. 1 boinc boinc       657 Oct  6 15:28 ZkKLDmmgXP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmONONDmhJBy5n.diag
[2025-10-06 15:28:21] -rw-r--r--. 1 boinc boinc      8703 Oct  6 15:28 runtime_log.err
[2025-10-06 15:28:21] -rw-r--r--. 1 boinc boinc     20696 Oct  6 15:28 stderr.txt
[2025-10-06 15:28:21] HITS file was successfully produced:
[2025-10-06 15:28:21] -rw-------. 1 boinc boinc 184253625 Oct  6 15:25 shared/HITS.pool.root.1
[2025-10-06 15:28:21]  *** Contents of shared directory: ***
[2025-10-06 15:28:21] total 390628
[2025-10-06 15:28:21] -rw-r--r--. 2 boinc boinc 212684769 Oct  6 11:13 ATLAS.root_0
[2025-10-06 15:28:21] -rw-r--r--. 2 boinc boinc    565603 Oct  6 11:13 input.tar.gz
[2025-10-06 15:28:21] -rw-r--r--. 2 boinc boinc     15120 Oct  6 11:13 start_atlas.sh
[2025-10-06 15:28:21] -rw-------. 1 boinc boinc 184253625 Oct  6 15:25 HITS.pool.root.1
[2025-10-06 15:28:21] -rw-------. 1 boinc boinc   2478080 Oct  6 15:28 result.tar.gz
15:28:22 (10289): run_atlas exited; CPU time 50077.647022
15:28:22 (10289): called boinc_finish(0)

</stderr_txt>
]]>

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