Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-08 14:40:27 (18928): vboxwrapper version 26210
2025-10-08 14:40:27 (18928): BOINC client version: 8.0.2
2025-10-08 14:40:29 (18928): Detected: VirtualBox VboxManage Interface (Version: 7.1.12)
2025-10-08 14:40:30 (18928): Successfully copied 'init_data.xml' to the shared directory.
2025-10-08 14:40:30 (18928): Create VM. (boinc_e1873212405a034d, slot#0)
2025-10-08 14:40:31 (18928): Setting Memory Size for VM. (4400MB)
2025-10-08 14:40:31 (18928): Setting CPU Count for VM. (2)
2025-10-08 14:40:31 (18928): Setting Chipset Options for VM.
2025-10-08 14:40:32 (18928): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-08 14:40:32 (18928): Setting Boot Options for VM.
2025-10-08 14:40:33 (18928): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-08 14:40:33 (18928): Enabling VM Network Access.
2025-10-08 14:40:34 (18928): Disabling USB Support for VM.
2025-10-08 14:40:34 (18928): Disabling COM Port Support for VM.
2025-10-08 14:40:34 (18928): Disabling LPT Port Support for VM.
2025-10-08 14:40:35 (18928): Disabling Audio Support for VM.
2025-10-08 14:40:35 (18928): Disabling Clipboard Support for VM.
2025-10-08 14:40:35 (18928): Disabling Drag and Drop Support for VM.
2025-10-08 14:40:36 (18928): Adding storage controller(s) to VM.
2025-10-08 14:40:36 (18928): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-08 14:40:39 (18928): Adding VirtualBox Guest Additions to VM.
2025-10-08 14:40:39 (18928): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-08 14:40:39 (18928): forwarding host port 53971 to guest port 80
2025-10-08 14:40:39 (18928): Enabling remote desktop for VM.
2025-10-08 14:40:40 (18928): Enabling shared directory for VM.
2025-10-08 14:40:41 (18928): Starting VM using VBoxManage interface. (boinc_e1873212405a034d, slot#0)
2025-10-08 14:40:51 (18928): Successfully started VM. (PID = '18780')
2025-10-08 14:40:51 (18928): Reporting VM Process ID to BOINC.
2025-10-08 14:40:51 (18928): Guest Log: BIOS: VirtualBox 7.1.12
2025-10-08 14:40:51 (18928): Guest Log: CPUID EDX: 0x178bfbff
2025-10-08 14:40:51 (18928): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-08 14:40:51 (18928): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-08 14:40:51 (18928): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-08 14:40:51 (18928): Detected: Web Application Enabled (http://localhost:53971)
2025-10-08 14:40:51 (18928): Detected: Remote Desktop Enabled (localhost:53972)
2025-10-08 14:40:51 (18928): Preference change detected
2025-10-08 14:40:51 (18928): Setting CPU throttle for VM. (100%)
2025-10-08 14:40:52 (18928): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-08 14:40:53 (18928): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-08 14:40:53 (18928): Guest Log: BIOS: Booting from Hard Disk...
2025-10-08 14:40:57 (18928): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-08 14:40:57 (18928): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-08 14:40:57 (18928): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-08 14:40:57 (18928): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-08 14:40:57 (18928): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-08 14:40:57 (18928): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-08 14:40:57 (18928): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-08 14:40:57 (18928): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-08 14:40:57 (18928): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-08 14:40:57 (18928): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-08 14:40:57 (18928): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-08 14:40:57 (18928): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-08 14:40:57 (18928): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-08 14:40:57 (18928): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-08 14:40:57 (18928): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-08 14:40:57 (18928): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-08 14:40:57 (18928): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-08 14:40:57 (18928): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-08 14:40:57 (18928): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-08 14:40:57 (18928): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-08 14:40:57 (18928): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-08 14:40:57 (18928): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-08 14:40:57 (18928): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-08 14:40:57 (18928): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-08 14:40:57 (18928): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-08 14:40:57 (18928): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-08 14:40:57 (18928): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-08 14:40:57 (18928): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-08 14:40:57 (18928): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-08 14:40:57 (18928): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-08 14:40:57 (18928): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-08 14:40:57 (18928): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-08 14:41:07 (18928): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-08 14:41:07 (18928): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-08 14:41:33 (18928): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-08 14:41:33 (18928): Guest Log: 00:00:00.000350 main     Log opened 2025-10-08T14:41:32.318004000Z
2025-10-08 14:41:33 (18928): Guest Log: 00:00:00.000548 main     OS Product: Linux
2025-10-08 14:41:33 (18928): Guest Log: 00:00:00.000625 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-08 14:41:33 (18928): Guest Log: 00:00:00.000691 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-08 14:41:33 (18928): Guest Log: 00:00:00.000820 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-08 14:41:33 (18928): Guest Log: 00:00:00.000823 main     Process ID: 1285
2025-10-08 14:41:33 (18928): Guest Log: 00:00:00.000826 main     Package type: LINUX_64BITS_GENERIC
2025-10-08 14:41:33 (18928): Guest Log: 00:00:00.004165 main     5.2.32 r132073 started. Verbose level = 0
2025-10-08 14:41:34 (18928): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-08 14:41:34 (18928): Guest Log: [INFO] Mounting shared directory
2025-10-08 14:41:34 (18928): Guest Log: [INFO] Checking for init_data.xml
2025-10-08 14:41:41 (18928): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-08 14:41:41 (18928): Guest Log: [INFO] Detected branch: prod
2025-10-08 14:41:42 (18928): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-08 14:41:42 (18928): Guest Log: Copying input files
2025-10-08 14:41:43 (18928): Guest Log: 00:00:10.010024 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 521 891 000ns (GuestNow=1 759 927 303 805 362 000 ns GuestLast=1 759 934 492 327 253 000 ns fSetTimeLastLoop=true )
2025-10-08 14:41:45 (18928): Guest Log: Copied input files into RunAtlas.
2025-10-08 14:41:45 (18928): Guest Log: Detected user-configured HTTP proxy at http://192.168.0.39:3128 - will set in /etc/cvmfs/default.local
2025-10-08 14:41:55 (18928): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-08 14:41:56 (18928): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-08 14:41:56 (18928): Guest Log: 2.6.3.0 1562 0 31528 151472 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.0.39:3128 1
2025-10-08 14:41:57 (18928): Guest Log: copied the webapp to /var/www
2025-10-08 14:41:57 (18928): Guest Log: ATHENA_PROC_NUMBER=2
2025-10-08 14:41:57 (18928): Guest Log: ATHENA_CORE_NUMBER=2
2025-10-08 14:41:58 (18928): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-08 14:41:58 (18928): Guest Log:  *** Starting ATLAS job. (PandaID=6830717628 taskID=46376905) ***
2025-10-08 16:21:01 (18928): Status Report: Elapsed Time: '6000.000000'
2025-10-08 16:21:01 (18928): Status Report: CPU Time: '10101.453125'
2025-10-08 18:01:39 (18928): Status Report: Elapsed Time: '12000.511164'
2025-10-08 18:01:40 (18928): Status Report: CPU Time: '21894.281250'
2025-10-08 19:41:52 (18928): Status Report: Elapsed Time: '18001.503969'
2025-10-08 19:41:52 (18928): Status Report: CPU Time: '33697.125000'
2025-10-08 21:22:04 (18928): Status Report: Elapsed Time: '24001.503969'
2025-10-08 21:22:04 (18928): Status Report: CPU Time: '45499.843750'
2025-10-08 23:02:14 (18928): Status Report: Elapsed Time: '30001.503969'
2025-10-08 23:02:14 (18928): Status Report: CPU Time: '57305.921875'
2025-10-09 00:42:24 (18928): Status Report: Elapsed Time: '36001.503969'
2025-10-09 00:42:24 (18928): Status Report: CPU Time: '69111.312500'
2025-10-09 02:22:57 (18928): Status Report: Elapsed Time: '42001.559938'
2025-10-09 02:22:57 (18928): Status Report: CPU Time: '80923.484375'
2025-10-09 04:03:07 (18928): Status Report: Elapsed Time: '48001.559938'
2025-10-09 04:03:07 (18928): Status Report: CPU Time: '92731.484375'
2025-10-09 05:43:18 (18928): Status Report: Elapsed Time: '54001.559938'
2025-10-09 05:43:18 (18928): Status Report: CPU Time: '104534.828125'
2025-10-09 07:23:28 (18928): Status Report: Elapsed Time: '60001.559938'
2025-10-09 07:23:28 (18928): Status Report: CPU Time: '116338.000000'
2025-10-09 09:03:38 (18928): Status Report: Elapsed Time: '66001.559938'
2025-10-09 09:03:38 (18928): Status Report: CPU Time: '128140.593750'
2025-10-09 10:43:51 (18928): Status Report: Elapsed Time: '72001.559938'
2025-10-09 10:43:51 (18928): Status Report: CPU Time: '139943.500000'
2025-10-09 10:52:03 (18928): Guest Log:  *** Job finished ***
2025-10-09 10:52:03 (18928): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-09 10:52:03 (18928): Guest Log: 2025-10-09 08:51:42,440 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-09 10:52:03 (18928): Guest Log: 2025-10-09 08:51:42,440 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-09 10:52:03 (18928): Guest Log: 2025-10-09 08:51:54,918 | INFO     | [monitor] cgroup control has ended
2025-10-09 10:52:03 (18928): Guest Log: 2025-10-09 08:51:57,022 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140014387631936)>', '<ExcThread(monitor, started 140014079944448)>']
2025-10-09 10:52:03 (18928): Guest Log: 2025-10-09 08:51:57,464 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-09 10:52:03 (18928): Guest Log: 2025-10-09 08:51:57,464 | INFO     | [monitor] control thread has ended
2025-10-09 10:52:03 (18928): Guest Log: 2025-10-09 08:52:02,032 | INFO     | all workflow threads have been joined
2025-10-09 10:52:03 (18928): Guest Log: 2025-10-09 08:52:02,032 | INFO     | end of generic workflow (traces error code: 0)
2025-10-09 10:52:03 (18928): Guest Log: 2025-10-09 08:52:02,032 | INFO     | traces error code: 0
2025-10-09 10:52:03 (18928): Guest Log: 2025-10-09 08:52:02,033 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-09 10:52:03 (18928): Guest Log: 2025-10-09 08:52:02,234 [wrapper] ==== pilot stdout END ====
2025-10-09 10:52:03 (18928): Guest Log: 2025-10-09 08:52:02,246 [wrapper] ==== wrapper stdout RESUME ====
2025-10-09 10:52:03 (18928): Guest Log: 2025-10-09 08:52:02,255 [wrapper] pilotpid: 5951
2025-10-09 10:52:03 (18928): Guest Log: 2025-10-09 08:52:02,265 [wrapper] Pilot exit status: 0
2025-10-09 10:52:03 (18928): Guest Log: 2025-10-09 08:52:02,359 [wrapper] pandaids: 6830717628
2025-10-09 10:52:03 (18928): Guest Log: 2025-10-09 08:52:02,441 [wrapper] cleanup supervisor_pilot  6784 5952
2025-10-09 10:52:03 (18928): Guest Log: 2025-10-09 08:52:02,454 [wrapper] Test setup, not cleaning
2025-10-09 10:52:03 (18928): Guest Log: 2025-10-09 08:52:02,471 [wrapper] apfmon messages muted
2025-10-09 10:52:03 (18928): Guest Log: 2025-10-09 08:52:02,481 [wrapper] ==== wrapper stdout END ====
2025-10-09 10:52:03 (18928): Guest Log: 2025-10-09 08:52:02,490 [wrapper] ==== wrapper stderr END ====
2025-10-09 10:52:03 (18928): Guest Log:  *** Error codes and diagnostics ***
2025-10-09 10:52:03 (18928): Guest Log:     "exeErrorCode": 0,
2025-10-09 10:52:03 (18928): Guest Log:     "exeErrorDiag": "",
2025-10-09 10:52:03 (18928): Guest Log:     "pilotErrorCode": 0,
2025-10-09 10:52:03 (18928): Guest Log:     "pilotErrorDiag": "",
2025-10-09 10:52:03 (18928): Guest Log:  *** Listing of results directory ***
2025-10-09 10:52:03 (18928): Guest Log: total 201572
2025-10-09 10:52:03 (18928): Guest Log: -rw-r--r--. 1 atlas atlas    552446 Oct  5 01:58 pilot3.tar.gz
2025-10-09 10:52:03 (18928): Guest Log: -rwx------. 1 atlas atlas     36292 Oct  5 02:01 runpilot2-wrapper.sh
2025-10-09 10:52:03 (18928): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct  5 02:01 queuedata.json
2025-10-09 10:52:03 (18928): Guest Log: -rwxr-xr-x. 1 atlas atlas      8446 Oct  8 12:41 init_data.xml
2025-10-09 10:52:03 (18928): Guest Log: -rwxr-xr-x. 1 atlas atlas    565598 Oct  8 12:41 input.tar.gz
2025-10-09 10:52:03 (18928): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct  8 12:41 start_atlas.sh
2025-10-09 10:52:03 (18928): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct  8 12:41 EVNT.46376901._002660.pool.root.1 -> /data/./ATLAS.root_0
2025-10-09 10:52:03 (18928): Guest Log: -rw-r--r--. 1 atlas atlas      2519 Oct  8 12:41 pandaJob.out
2025-10-09 10:52:03 (18928): Guest Log: -rw-------. 1 atlas atlas    979337 Oct  8 12:43 agis_schedconf.cvmfs.json
2025-10-09 10:52:03 (18928): Guest Log: drwx------. 4 atlas atlas      4096 Oct  8 12:43 pilot3
2025-10-09 10:52:03 (18928): Guest Log: -rw-------. 1 atlas atlas 181074398 Oct  9 08:49 HITS.46376905._073042.pool.root.1
2025-10-09 10:52:03 (18928): Guest Log: -rw-------. 1 atlas atlas      1029 Oct  9 08:50 memory_monitor_summary.json
2025-10-09 10:52:03 (18928): Guest Log: -rw-------. 1 atlas atlas   1560401 Oct  9 08:50 agis_ddmendpoints.agis.ALL.json
2025-10-09 10:52:03 (18928): Guest Log: -rw-------. 1 atlas atlas   1168446 Oct  9 08:50 log.46376905._073042.job.log.tgz.1
2025-10-09 10:52:03 (18928): Guest Log: -rw-------. 1 atlas atlas      7801 Oct  9 08:51 heartbeat.json
2025-10-09 10:52:03 (18928): Guest Log: -rw-------. 1 atlas atlas        95 Oct  9 08:51 pilot_heartbeat.json
2025-10-09 10:52:03 (18928): Guest Log: -rw-------. 1 atlas atlas      4805 Oct  9 08:52 pilotlog.txt
2025-10-09 10:52:03 (18928): Guest Log: -rw-------. 1 atlas atlas   9585682 Oct  9 08:52 log.46376905._073042.job.log.1
2025-10-09 10:52:03 (18928): Guest Log: -rw-------. 1 atlas atlas       357 Oct  9 08:52 output.list
2025-10-09 10:52:03 (18928): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct  9 08:52 runtime_log
2025-10-09 10:52:03 (18928): Guest Log: -rw-------. 1 atlas atlas  10772480 Oct  9 08:52 result.tar.gz
2025-10-09 10:52:03 (18928): Guest Log: -rw-r--r--. 1 atlas atlas      8636 Oct  9 08:52 runtime_log.err
2025-10-09 10:52:03 (18928): Guest Log: -rw-------. 1 atlas atlas       663 Oct  9 08:52 dXFLDmLFTP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmsTNNDmveCW6m.diag
2025-10-09 10:52:03 (18928): Guest Log: Looking for outputfile HITS.46376905._073042.pool.root.1
2025-10-09 10:52:03 (18928): Guest Log: HITS file was successfully produced
2025-10-09 10:52:03 (18928): Guest Log: -rw-------. 1 atlas atlas 181074398 Oct  9 08:49 /home/atlas/RunAtlas/HITS.46376905._073042.pool.root.1
2025-10-09 10:52:05 (18928): Guest Log: Successfully finished the ATLAS job!
2025-10-09 10:52:05 (18928): Guest Log: Copying the results back to the shared directory!
2025-10-09 10:52:06 (18928): Guest Log:  *** Contents of shared directory: ***
2025-10-09 10:52:06 (18928): Guest Log: total 399932
2025-10-09 10:52:06 (18928): Guest Log: -rwxrwxrwx. 1 root root 217082862 Oct  8 12:40 ATLAS.root_0
2025-10-09 10:52:06 (18928): Guest Log: -rwxrwxrwx. 1 root root 181074398 Oct  9 08:52 HITS.pool.root.1
2025-10-09 10:52:06 (18928): Guest Log: -rwxrwxrwx. 1 root root      8446 Oct  8 12:40 init_data.xml
2025-10-09 10:52:06 (18928): Guest Log: -rwxrwxrwx. 1 root root    565598 Oct  5 05:36 input.tar.gz
2025-10-09 10:52:06 (18928): Guest Log: -rwxrwxrwx. 1 root root  10772480 Oct  9 08:52 result.tar.gz
2025-10-09 10:52:06 (18928): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct  5 05:36 start_atlas.sh
2025-10-09 10:52:06 (18928): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-09 10:52:06 (18928): VM Completion File Detected.
2025-10-09 10:52:06 (18928): Powering off VM.
2025-10-09 10:52:07 (18928): Successfully stopped VM.
2025-10-09 10:52:07 (18928): Deregistering VM. (boinc_e1873212405a034d, slot#0)
2025-10-09 10:52:07 (18928): Removing network bandwidth throttle group from VM.
2025-10-09 10:52:08 (18928): Removing VM from VirtualBox.
2025-10-09 10:52:13 (18928): called boinc_finish(0)

</stderr_txt>
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