Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
06:05:51 (870): wrapper (7.7.26015): starting
06:05:51 (870): wrapper: running run_atlas (--nthreads 8)
[2025-10-05 06:05:51] Arguments: --nthreads 8
[2025-10-05 06:05:51] Threads: 8
[2025-10-05 06:05:51] Checking for CVMFS
[2025-10-05 06:05:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-05 06:05:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-05 06:05:52] Running cvmfs_config stat atlas.cern.ch
[2025-10-05 06:05:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-05 06:05:52] 2.11.0.0 4411 67075 60424 151350 2 3 2875090 4096000 24 130560 2 1610824 99.096 3229718 400 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-10-05 06:05:52] CVMFS is ok
[2025-10-05 06:05:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-05 06:05:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-05 06:05:52] Further information can be found at the LHC@home message board.
[2025-10-05 06:05:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-05 06:05:52] Checking for apptainer binary...
[2025-10-05 06:05:52] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-10-05 06:05:52] apptainer is not installed, using version from CVMFS
[2025-10-05 06:05:52] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-05 06:05:52] WARNING: Environment variable TMPDIR already has value [/tmp/job_10190265/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node423
[2025-10-05 06:05:52] apptainer works
[2025-10-05 06:05:52] Set ATHENA_PROC_NUMBER=8
[2025-10-05 06:05:52] Set ATHENA_CORE_NUMBER=8
[2025-10-05 06:05:52] Starting ATLAS job with PandaID=6830134568
[2025-10-05 06:05:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10190265/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-05 07:57:29]  *** The last 200 lines of the pilot log: ***
[2025-10-05 07:57:29] 2025-10-05 05:56:25,804 | INFO     | -- intersect: -801411280692.2611
[2025-10-05 07:57:29] 2025-10-05 05:56:25,804 | INFO     | intersect: -801411280692.2611
[2025-10-05 07:57:29] 2025-10-05 05:56:25,804 | INFO     | chi2: 12.41501611094048
[2025-10-05 07:57:29] 2025-10-05 05:56:25,804 | INFO     | sum of square deviations: 291817564.5
[2025-10-05 07:57:29] 2025-10-05 05:56:25,805 | INFO     | sum of deviations: 139974518670.5
[2025-10-05 07:57:29] 2025-10-05 05:56:25,805 | INFO     | mean x: 1759640478.5
[2025-10-05 07:57:29] 2025-10-05 05:56:25,805 | INFO     | mean y: 1563163.5204081633
[2025-10-05 07:57:29] 2025-10-05 05:56:25,805 | INFO     | -- intersect: -844035461931.8823
[2025-10-05 07:57:29] 2025-10-05 05:56:25,805 | INFO     | intersect: -844035461931.8823
[2025-10-05 07:57:29] 2025-10-05 05:56:25,805 | INFO     | chi2: 11.9356065215047
[2025-10-05 07:57:29] 2025-10-05 05:56:25,805 | INFO     | current chi2=11.9356065215047 (change=3.8615301434309774 %)
[2025-10-05 07:57:29] 2025-10-05 05:56:25,805 | INFO     | right removable region: 97
[2025-10-05 07:57:29] 2025-10-05 05:56:25,805 | INFO     | sum of square deviations: 291817564.5
[2025-10-05 07:57:29] 2025-10-05 05:56:25,805 | INFO     | sum of deviations: 129383691930.0
[2025-10-05 07:57:29] 2025-10-05 05:56:25,805 | INFO     | mean x: 1759640783.5
[2025-10-05 07:57:29] 2025-10-05 05:56:25,805 | INFO     | mean y: 1690628.9591836734
[2025-10-05 07:57:29] 2025-10-05 05:56:25,805 | INFO     | -- intersect: -780173489812.6821
[2025-10-05 07:57:29] 2025-10-05 05:56:25,805 | INFO     | intersect: -780173489812.6821
[2025-10-05 07:57:29] 2025-10-05 05:56:25,806 | INFO     | chi2: 8.202351452190282
[2025-10-05 07:57:29] 2025-10-05 05:56:25,806 | INFO     | current chi2=8.202351452190282 (change=33.93201121211493 %)
[2025-10-05 07:57:29] 2025-10-05 05:56:25,806 | INFO     | sum of square deviations: 249388862.0
[2025-10-05 07:57:29] 2025-10-05 05:56:25,806 | INFO     | sum of deviations: 105036579235.0
[2025-10-05 07:57:29] 2025-10-05 05:56:25,806 | INFO     | mean x: 1759640936.0
[2025-10-05 07:57:29] 2025-10-05 05:56:25,806 | INFO     | mean y: 1778195.3548387096
[2025-10-05 07:57:29] 2025-10-05 05:56:25,806 | INFO     | -- intersect: -741116582572.9523
[2025-10-05 07:57:29] 2025-10-05 05:56:25,806 | INFO     | intersect: -741116582572.9523
[2025-10-05 07:57:29] 2025-10-05 05:56:25,806 | INFO     | chi2: 4.399939013588789
[2025-10-05 07:57:29] 2025-10-05 05:56:25,806 | INFO     | current chi2=4.399939013588789 (change=46.357589780990565 %)
[2025-10-05 07:57:29] 2025-10-05 05:56:25,806 | INFO     | sum of square deviations: 211285822.0
[2025-10-05 07:57:29] 2025-10-05 05:56:25,807 | INFO     | sum of deviations: 82064443628.0
[2025-10-05 07:57:29] 2025-10-05 05:56:25,807 | INFO     | mean x: 1759641088.5
[2025-10-05 07:57:29] 2025-10-05 05:56:25,807 | INFO     | mean y: 1870162.0454545454
[2025-10-05 07:57:29] 2025-10-05 05:56:25,807 | INFO     | -- intersect: -683451309733.3893
[2025-10-05 07:57:29] 2025-10-05 05:56:25,807 | INFO     | intersect: -683451309733.3893
[2025-10-05 07:57:29] 2025-10-05 05:56:25,807 | INFO     | chi2: 1.4545670752430282
[2025-10-05 07:57:29] 2025-10-05 05:56:25,807 | INFO     | current chi2=1.4545670752430282 (change=66.94119916774443 %)
[2025-10-05 07:57:29] 2025-10-05 05:56:25,807 | INFO     | sum of square deviations: 177275882.0
[2025-10-05 07:57:29] 2025-10-05 05:56:25,807 | INFO     | sum of deviations: 66981044205.0
[2025-10-05 07:57:29] 2025-10-05 05:56:25,807 | INFO     | mean x: 1759641241.0
[2025-10-05 07:57:29] 2025-10-05 05:56:25,807 | INFO     | mean y: 1937705.2771084337
[2025-10-05 07:57:29] 2025-10-05 05:56:25,807 | INFO     | -- intersect: -664852223044.9261
[2025-10-05 07:57:29] 2025-10-05 05:56:25,807 | INFO     | intersect: -664852223044.9261
[2025-10-05 07:57:29] 2025-10-05 05:56:25,807 | INFO     | chi2: 1.2331308755147592
[2025-10-05 07:57:29] 2025-10-05 05:56:25,807 | INFO     | current chi2=1.2331308755147592 (change=15.22351244553446 %)
[2025-10-05 07:57:29] 2025-10-05 05:56:25,807 | INFO     | left removable region: 40
[2025-10-05 07:57:29] 2025-10-05 05:56:25,808 | INFO     | sum of square deviations: 57407588.0
[2025-10-05 07:57:29] 2025-10-05 05:56:25,808 | INFO     | sum of deviations: 23941415542.0
[2025-10-05 07:57:29] 2025-10-05 05:56:25,808 | INFO     | mean x: 1759641668.0
[2025-10-05 07:57:29] 2025-10-05 05:56:25,808 | INFO     | mean y: 2140461.5614035088
[2025-10-05 07:57:29] 2025-10-05 05:56:25,808 | INFO     | -- intersect: -733843573080.8018
[2025-10-05 07:57:29] 2025-10-05 05:56:25,808 | INFO     | intersect: -733843573080.8018
[2025-10-05 07:57:29] 2025-10-05 05:56:25,808 | INFO     | chi2: 0.8855348756004112
[2025-10-05 07:57:29] 2025-10-05 05:56:25,808 | INFO     | -- intersect: -733843573080.8018
[2025-10-05 07:57:29] 2025-10-05 05:56:25,808 | INFO     | current memory leak: 417.04 B/s (using 57 data points, chi2=0.89)
[2025-10-05 07:57:29] 2025-10-05 05:56:25,808 | INFO     | could have reported an average CPU frequency of 2592 MHz (7 samples)
[2025-10-05 07:57:29] 2025-10-05 05:56:25,808 | INFO     | ..............................
[2025-10-05 07:57:29] 2025-10-05 05:56:25,808 | INFO     | . Timing measurements:
[2025-10-05 07:57:29] 2025-10-05 05:56:25,808 | INFO     | . get job = 0 s
[2025-10-05 07:57:29] 2025-10-05 05:56:25,808 | INFO     | . initial setup = 8 s
[2025-10-05 07:57:29] 2025-10-05 05:56:25,808 | INFO     | . payload setup = 206 s
[2025-10-05 07:57:29] 2025-10-05 05:56:25,808 | INFO     | . stage-in = 0 s
[2025-10-05 07:57:29] 2025-10-05 05:56:25,808 | INFO     | . payload execution = 6264 s
[2025-10-05 07:57:29] 2025-10-05 05:56:25,808 | INFO     | . stage-out = 0 s
[2025-10-05 07:57:29] 2025-10-05 05:56:25,808 | INFO     | . log creation = 0 s
[2025-10-05 07:57:29] 2025-10-05 05:56:25,808 | INFO     | ..............................
[2025-10-05 07:57:29] 2025-10-05 05:56:25,859 | INFO     | 
[2025-10-05 07:57:29] 2025-10-05 05:56:25,859 | INFO     | job summary report
[2025-10-05 07:57:29] 2025-10-05 05:56:25,859 | INFO     | --------------------------------------------------
[2025-10-05 07:57:29] 2025-10-05 05:56:25,859 | INFO     | PanDA job id: 6830134568
[2025-10-05 07:57:29] 2025-10-05 05:56:25,859 | INFO     | task id: 46376905
[2025-10-05 07:57:29] 2025-10-05 05:56:25,859 | INFO     | errors: (none)
[2025-10-05 07:57:29] 2025-10-05 05:56:25,859 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-05 07:57:29] 2025-10-05 05:56:25,859 | INFO     | pilot state: finished 
[2025-10-05 07:57:29] 2025-10-05 05:56:25,859 | INFO     | transexitcode: 0
[2025-10-05 07:57:29] 2025-10-05 05:56:25,859 | INFO     | exeerrorcode: 0
[2025-10-05 07:57:29] 2025-10-05 05:56:25,859 | INFO     | exeerrordiag: 
[2025-10-05 07:57:29] 2025-10-05 05:56:25,859 | INFO     | exitcode: 0
[2025-10-05 07:57:29] 2025-10-05 05:56:25,859 | INFO     | exitmsg: OK
[2025-10-05 07:57:29] 2025-10-05 05:56:25,859 | INFO     | cpuconsumptiontime: 19609 s
[2025-10-05 07:57:29] 2025-10-05 05:56:25,859 | INFO     | nevents: 400
[2025-10-05 07:57:29] 2025-10-05 05:56:25,860 | INFO     | neventsw: 0
[2025-10-05 07:57:29] 2025-10-05 05:56:25,860 | INFO     | pid: 28613
[2025-10-05 07:57:29] 2025-10-05 05:56:25,860 | INFO     | pgrp: 28613
[2025-10-05 07:57:29] 2025-10-05 05:56:25,860 | INFO     | corecount: 8
[2025-10-05 07:57:29] 2025-10-05 05:56:25,860 | INFO     | event service: False
[2025-10-05 07:57:29] 2025-10-05 05:56:25,860 | INFO     | sizes: {0: 2347988, 1: 2348970, 4: 2349232, 11: 2349260, 6473: 2376276, 6475: 2385488, 6478: 2385626}
[2025-10-05 07:57:29] 2025-10-05 05:56:25,860 | INFO     | --------------------------------------------------
[2025-10-05 07:57:29] 2025-10-05 05:56:25,860 | INFO     | 
[2025-10-05 07:57:29] 2025-10-05 05:56:25,860 | INFO     | executing command: ls -lF /tmp/job_10190265/atlas/pilot/slots/0
[2025-10-05 07:57:29] 2025-10-05 05:56:25,868 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-05 07:57:29] 2025-10-05 05:56:25,868 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-05 07:57:29] 2025-10-05 05:56:25,868 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-05 07:57:29] 2025-10-05 05:56:25,868 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-05 07:57:29] 2025-10-05 05:56:25,868 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-05 07:57:29] 2025-10-05 05:56:25,868 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-05 07:57:29] 2025-10-05 05:56:25,868 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-05 07:57:29] 2025-10-05 05:56:25,868 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-05 07:57:29] 2025-10-05 05:56:25,868 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-05 07:57:29] 2025-10-05 05:56:25,868 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-05 07:57:29] 2025-10-05 05:56:25,868 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-05 07:57:29] 2025-10-05 05:56:25,868 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-05 07:57:29] 2025-10-05 05:56:25,868 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-05 07:57:29] 2025-10-05 05:56:25,868 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-05 07:57:29] 2025-10-05 05:56:25,868 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-05 07:57:29] 2025-10-05 05:56:25,868 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-05 07:57:29] 2025-10-05 05:56:25,869 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-05 07:57:29] 2025-10-05 05:56:25,869 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-05 07:57:29] 2025-10-05 05:56:25,869 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-05 07:57:29] 2025-10-05 05:56:25,869 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-05 07:57:29] 2025-10-05 05:56:25,869 | INFO     | job 6830134568 has completed (purged errors)
[2025-10-05 07:57:29] 2025-10-05 05:56:25,869 | INFO     | overall cleanup function is called
[2025-10-05 07:57:29] 2025-10-05 05:56:26,875 | INFO     | --- collectZombieJob: --- 10, [28613]
[2025-10-05 07:57:29] 2025-10-05 05:56:26,875 | INFO     | zombie collector waiting for pid 28613
[2025-10-05 07:57:29] 2025-10-05 05:56:26,875 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-05 07:57:29] 2025-10-05 05:56:26,875 | INFO     | collected zombie processes
[2025-10-05 07:57:29] 2025-10-05 05:56:26,875 | INFO     | will attempt to kill all subprocesses of pid=28613
[2025-10-05 07:57:29] 2025-10-05 05:56:26,967 | INFO     | process IDs to be killed: [28613] (in reverse order)
[2025-10-05 07:57:29] 2025-10-05 05:56:26,997 | WARNING  | found no corresponding commands to process id(s)
[2025-10-05 07:57:29] 2025-10-05 05:56:26,998 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-05 07:57:29] 2025-10-05 05:56:27,002 | INFO     | did not find any defunct processes belonging to 28613
[2025-10-05 07:57:29] 2025-10-05 05:56:27,005 | INFO     | did not find any defunct processes belonging to 28613
[2025-10-05 07:57:29] 2025-10-05 05:56:27,005 | INFO     | ready for new job
[2025-10-05 07:57:29] 2025-10-05 05:56:27,005 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-05 07:57:29] 2025-10-05 05:56:27,006 | INFO     | ***************************************
[2025-10-05 07:57:29] 2025-10-05 05:56:27,006 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-05 07:57:29] 2025-10-05 05:56:27,006 | INFO     | ***************************************
[2025-10-05 07:57:29] 2025-10-05 05:56:27,006 | INFO     | 
[2025-10-05 07:57:29] 2025-10-05 05:56:27,019 | INFO     | architecture information:
[2025-10-05 07:57:29] 2025-10-05 05:56:27,020 | INFO     | executing command: cat /etc/os-release
[2025-10-05 07:57:29] 2025-10-05 05:56:27,025 | INFO     | cat /etc/os-release:
[2025-10-05 07:57:29] NAME="CentOS Linux"
[2025-10-05 07:57:29] VERSION="7 (Core)"
[2025-10-05 07:57:29] ID="centos"
[2025-10-05 07:57:29] ID_LIKE="rhel fedora"
[2025-10-05 07:57:29] VERSION_ID="7"
[2025-10-05 07:57:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-05 07:57:29] ANSI_COLOR="0;31"
[2025-10-05 07:57:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-05 07:57:29] HOME_URL="https://www.centos.org/"
[2025-10-05 07:57:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-05 07:57:29] 
[2025-10-05 07:57:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-05 07:57:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-05 07:57:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-05 07:57:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-05 07:57:29] 
[2025-10-05 07:57:29] 2025-10-05 05:56:27,025 | INFO     | ***************************************
[2025-10-05 07:57:29] 2025-10-05 05:56:27,528 | INFO     | executing command: df -mP /tmp/job_10190265/atlas/pilot/slots/0
[2025-10-05 07:57:29] 2025-10-05 05:56:27,533 | INFO     | sufficient remaining disk space (228032774144 B)
[2025-10-05 07:57:29] 2025-10-05 05:56:27,533 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-05 07:57:29] 2025-10-05 05:56:27,533 | INFO     | current server update state: UPDATING_FINAL
[2025-10-05 07:57:29] 2025-10-05 05:56:27,533 | INFO     | update_server=False
[2025-10-05 07:57:29] 2025-10-05 05:56:27,533 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-05 07:57:29] 2025-10-05 05:56:27,533 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-05 07:57:29] 2025-10-05 05:56:27,534 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-05 07:57:29] 2025-10-05 05:56:27,534 | INFO     | aborting loop
[2025-10-05 07:57:29] 2025-10-05 05:56:27,536 | INFO     | all data control threads have been joined
[2025-10-05 07:57:29] 2025-10-05 05:56:27,650 | INFO     | all job control threads have been joined
[2025-10-05 07:57:29] 2025-10-05 05:56:27,830 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-05 07:57:29] 2025-10-05 05:56:28,538 | INFO     | [job] retrieve thread has finished
[2025-10-05 07:57:29] 2025-10-05 05:56:28,538 | INFO     | [job] job monitor thread has finished
[2025-10-05 07:57:29] 2025-10-05 05:56:28,538 | INFO     | [job] queue monitor thread has finished
[2025-10-05 07:57:29] 2025-10-05 05:56:28,541 | INFO     | [data] control thread has finished
[2025-10-05 07:57:29] 2025-10-05 05:56:28,595 | INFO     | [payload] validate_post thread has finished
[2025-10-05 07:57:29] 2025-10-05 05:56:28,655 | INFO     | [job] control thread has finished
[2025-10-05 07:57:29] 2025-10-05 05:56:28,684 | INFO     | all payload control threads have been joined
[2025-10-05 07:57:29] 2025-10-05 05:56:28,737 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-05 07:57:29] 2025-10-05 05:56:28,934 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-05 07:57:29] 2025-10-05 05:56:29,129 | INFO     | [payload] failed_post thread has finished
[2025-10-05 07:57:29] 2025-10-05 05:56:29,394 | INFO     | [job] validate thread has finished
[2025-10-05 07:57:29] 2025-10-05 05:56:29,617 | INFO     | [data] copytool_in thread has finished
[2025-10-05 07:57:29] 2025-10-05 05:56:29,648 | INFO     | [payload] execute_payloads thread has finished
[2025-10-05 07:57:29] 2025-10-05 05:56:29,689 | INFO     | [payload] control thread has finished
[2025-10-05 07:57:29] 2025-10-05 05:56:29,735 | INFO     | [job] create_data_payload thread has finished
[2025-10-05 07:57:29] 2025-10-05 05:56:29,796 | INFO     | [payload] validate_pre thread has finished
[2025-10-05 07:57:29] 2025-10-05 05:56:29,835 | INFO     | [data] copytool_out thread has finished
[2025-10-05 07:57:29] 2025-10-05 05:56:32,742 | INFO     | [data] queue_monitor thread has finished
[2025-10-05 07:57:29] 2025-10-05 05:56:57,563 | INFO     | PID=2051 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-05 07:57:29] 2025-10-05 05:56:57,563 | INFO     | .. there are 2 such processes running
[2025-10-05 07:57:29] 2025-10-05 05:56:57,563 | INFO     | found 0 job(s) in 20 queues
[2025-10-05 07:57:29] 2025-10-05 05:56:57,563 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-05 07:57:29] 2025-10-05 05:56:57,563 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-05 07:57:29] 2025-10-05 05:57:22,196 | INFO     | [monitor] cgroup control has ended
[2025-10-05 07:57:29] 2025-10-05 05:57:24,178 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456064747264)>']
[2025-10-05 07:57:29] 2025-10-05 05:57:24,695 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-05 07:57:29] 2025-10-05 05:57:24,695 | INFO     | [monitor] control thread has ended
[2025-10-05 07:57:29] 2025-10-05 05:57:29,203 | INFO     | all workflow threads have been joined
[2025-10-05 07:57:29] 2025-10-05 05:57:29,203 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-05 07:57:29] 2025-10-05 05:57:29,203 | INFO     | traces error code: 0
[2025-10-05 07:57:29] 2025-10-05 05:57:29,203 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-05 07:57:29] 2025-10-05 05:57:29,254 [wrapper] ==== pilot stdout END ====
[2025-10-05 07:57:29] 2025-10-05 05:57:29,255 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-05 07:57:29] 2025-10-05 05:57:29,256 [wrapper] pilotpid: 2051
[2025-10-05 07:57:29] 2025-10-05 05:57:29,257 [wrapper] Pilot exit status: 0
[2025-10-05 07:57:29] 2025-10-05 05:57:29,261 [wrapper] pandaids: 6830134568
[2025-10-05 07:57:29] 2025-10-05 05:57:29,282 [wrapper] cleanup supervisor_pilot 15472 2055
[2025-10-05 07:57:29] 2025-10-05 05:57:29,283 [wrapper] Test setup, not cleaning
[2025-10-05 07:57:29] 2025-10-05 05:57:29,285 [wrapper] apfmon messages muted
[2025-10-05 07:57:29] 2025-10-05 05:57:29,286 [wrapper] ==== wrapper stdout END ====
[2025-10-05 07:57:29] 2025-10-05 05:57:29,287 [wrapper] ==== wrapper stderr END ====
[2025-10-05 07:57:29]  *** Error codes and diagnostics ***
[2025-10-05 07:57:29]     "exeErrorCode": 0,
[2025-10-05 07:57:29]     "exeErrorDiag": "",
[2025-10-05 07:57:29]     "pilotErrorCode": 0,
[2025-10-05 07:57:29]     "pilotErrorDiag": "",
[2025-10-05 07:57:29]  *** Listing of results directory ***
[2025-10-05 07:57:29] total 396472
[2025-10-05 07:57:29] -rw------- 1 mf493845 unix-user    552446 Oct  4 20:41 pilot3.tar.gz
[2025-10-05 07:57:29] -rw------- 1 mf493845 unix-user      5112 Oct  4 20:45 queuedata.json
[2025-10-05 07:57:29] -rwx------ 1 mf493845 unix-user     36292 Oct  4 20:48 runpilot2-wrapper.sh
[2025-10-05 07:57:29] -rw------- 1 mf493845 unix-user       100 Oct  5 05:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-05 07:57:29] -rwxr-xr-x 1 mf493845 unix-user      7986 Oct  5 05:11 run_atlas
[2025-10-05 07:57:29] -rw------- 1 mf493845 unix-user       105 Oct  5 05:11 job.xml
[2025-10-05 07:57:29] -rw-r--r-- 2 mf493845 unix-user 214416123 Oct  5 06:05 EVNT.46376901._002371.pool.root.1
[2025-10-05 07:57:29] -rw-r--r-- 2 mf493845 unix-user     15120 Oct  5 06:05 start_atlas.sh
[2025-10-05 07:57:29] drwxrwx--x 2 mf493845 unix-user       100 Oct  5 06:05 shared
[2025-10-05 07:57:29] -rw-r--r-- 2 mf493845 unix-user    565606 Oct  5 06:05 input.tar.gz
[2025-10-05 07:57:29] -rw------- 1 mf493845 unix-user      6368 Oct  5 06:05 init_data.xml
[2025-10-05 07:57:29] -rw------- 1 mf493845 unix-user         0 Oct  5 06:05 boinc_setup_complete
[2025-10-05 07:57:29] -rw------- 1 mf493845 unix-user      8192 Oct  5 06:05 boinc_mmap_file
[2025-10-05 07:57:29] -rw------- 1 mf493845 unix-user         0 Oct  5 06:05 boinc_lockfile
[2025-10-05 07:57:29] -rw------- 1 mf493845 unix-user      2519 Oct  5 06:05 pandaJob.out
[2025-10-05 07:57:29] -rw------- 1 mf493845 unix-user    973982 Oct  5 06:08 agis_schedconf.cvmfs.json
[2025-10-05 07:57:29] -rw------- 1 mf493845 unix-user   1560401 Oct  5 06:08 agis_ddmendpoints.agis.ALL.json
[2025-10-05 07:57:29] drwx------ 4 mf493845 unix-user       400 Oct  5 06:08 pilot3
[2025-10-05 07:57:29] -rw------- 1 mf493845 unix-user 185132556 Oct  5 07:55 HITS.46376905._065494.pool.root.1
[2025-10-05 07:57:29] -rw------- 1 mf493845 unix-user      1018 Oct  5 07:56 memory_monitor_summary.json
[2025-10-05 07:57:29] -rw------- 1 mf493845 unix-user        95 Oct  5 07:56 pilot_heartbeat.json
[2025-10-05 07:57:29] -rw------- 1 mf493845 unix-user    332214 Oct  5 07:56 log.46376905._065494.job.log.tgz.1
[2025-10-05 07:57:29] -rw------- 1 mf493845 unix-user      7783 Oct  5 07:56 heartbeat.json
[2025-10-05 07:57:29] -rw------- 1 mf493845 unix-user      4834 Oct  5 07:57 pilotlog.txt
[2025-10-05 07:57:29] -rw------- 1 mf493845 unix-user    957740 Oct  5 07:57 log.46376905._065494.job.log.1
[2025-10-05 07:57:29] -rw------- 1 mf493845 unix-user       357 Oct  5 07:57 output.list
[2025-10-05 07:57:29] -rw------- 1 mf493845 unix-user       620 Oct  5 07:57 runtime_log
[2025-10-05 07:57:29] -rw------- 1 mf493845 unix-user   1310720 Oct  5 07:57 result.tar.gz
[2025-10-05 07:57:29] -rw------- 1 mf493845 unix-user       643 Oct  5 07:57 sjgKDmGUMP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm2IMNDm684tgn.diag
[2025-10-05 07:57:29] -rw------- 1 mf493845 unix-user      9076 Oct  5 07:57 runtime_log.err
[2025-10-05 07:57:29] -rw------- 1 mf493845 unix-user     21292 Oct  5 07:57 stderr.txt
[2025-10-05 07:57:29] HITS file was successfully produced:
[2025-10-05 07:57:29] -rw------- 1 mf493845 unix-user 185132556 Oct  5 07:55 shared/HITS.pool.root.1
[2025-10-05 07:57:29]  *** Contents of shared directory: ***
[2025-10-05 07:57:29] total 392040
[2025-10-05 07:57:29] -rw-r--r-- 2 mf493845 unix-user 214416123 Oct  5 06:05 ATLAS.root_0
[2025-10-05 07:57:29] -rw-r--r-- 2 mf493845 unix-user     15120 Oct  5 06:05 start_atlas.sh
[2025-10-05 07:57:29] -rw-r--r-- 2 mf493845 unix-user    565606 Oct  5 06:05 input.tar.gz
[2025-10-05 07:57:29] -rw------- 1 mf493845 unix-user 185132556 Oct  5 07:55 HITS.pool.root.1
[2025-10-05 07:57:29] -rw------- 1 mf493845 unix-user   1310720 Oct  5 07:57 result.tar.gz
07:57:30 (870): run_atlas exited; CPU time 19707.366283
07:57:30 (870): called boinc_finish(0)

</stderr_txt>
]]>

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