Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:39:25 (449330): wrapper (7.7.26015): starting
13:39:25 (449330): wrapper: running run_atlas (--nthreads 4)
[2025-10-06 13:39:25] Arguments: --nthreads 4
[2025-10-06 13:39:25] Threads: 4
[2025-10-06 13:39:25] Checking for CVMFS
[2025-10-06 13:39:25] No cvmfs_config command found, will try listing directly
[2025-10-06 13:39:25] CVMFS is ok
[2025-10-06 13:39:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-06 13:39:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-06 13:39:25] Further information can be found at the LHC@home message board.
[2025-10-06 13:39:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-06 13:39:25] Checking for apptainer binary...
[2025-10-06 13:39:25] which: no apptainer in ((null))
[2025-10-06 13:39:25] apptainer is not installed, using version from CVMFS
[2025-10-06 13:39:25] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-06 13:39:25] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut05.grid.cesnet.cz
[2025-10-06 13:39:25] apptainer works
[2025-10-06 13:39:25] Set ATHENA_PROC_NUMBER=4
[2025-10-06 13:39:25] Set ATHENA_CORE_NUMBER=4
[2025-10-06 13:39:25] Starting ATLAS job with PandaID=6830321615
[2025-10-06 13:39:25] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
14:27:49 (518028): wrapper (7.7.26015): starting
14:27:49 (518028): wrapper: running run_atlas (--nthreads 4)
[2025-10-06 14:27:49] Arguments: --nthreads 4
[2025-10-06 14:27:49] Threads: 4
[2025-10-06 14:27:49] This job has been restarted, cleaning up previous attempt
[2025-10-06 14:27:49] Checking for CVMFS
[2025-10-06 14:27:49] No cvmfs_config command found, will try listing directly
[2025-10-06 14:27:49] CVMFS is ok
[2025-10-06 14:27:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-06 14:27:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-06 14:27:49] Further information can be found at the LHC@home message board.
[2025-10-06 14:27:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-06 14:27:49] Checking for apptainer binary...
[2025-10-06 14:27:49] which: no apptainer in ((null))
[2025-10-06 14:27:49] apptainer is not installed, using version from CVMFS
[2025-10-06 14:27:49] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-06 14:27:49] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut05.grid.cesnet.cz
[2025-10-06 14:27:49] apptainer works
[2025-10-06 14:27:49] Set ATHENA_PROC_NUMBER=4
[2025-10-06 14:27:49] Set ATHENA_CORE_NUMBER=4
[2025-10-06 14:27:49] Starting ATLAS job with PandaID=6830321615
[2025-10-06 14:27:49] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-06 16:58:48]  *** The last 200 lines of the pilot log: ***
[2025-10-06 16:58:49] 2025-10-06 14:52:17,173 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-06 16:58:49] 2025-10-06 14:52:17,176 | INFO     | fitting pss+swap vs Time
[2025-10-06 16:58:49] 2025-10-06 14:52:17,176 | INFO     | sum of square deviations: 887813855.5
[2025-10-06 16:58:49] 2025-10-06 14:52:17,177 | INFO     | sum of deviations: 2254871435.5
[2025-10-06 16:58:49] 2025-10-06 14:52:17,177 | INFO     | mean x: 1759758004.5
[2025-10-06 16:58:49] 2025-10-06 14:52:17,177 | INFO     | mean y: 2311568.8380281692
[2025-10-06 16:58:49] 2025-10-06 14:52:17,177 | INFO     | -- intersect: -4467125389.323446
[2025-10-06 16:58:49] 2025-10-06 14:52:17,178 | INFO     | intersect: -4467125389.323446
[2025-10-06 16:58:49] 2025-10-06 14:52:17,178 | INFO     | chi2: 2.238081668448966
[2025-10-06 16:58:49] 2025-10-06 14:52:17,178 | INFO     | sum of square deviations: 797291228.0
[2025-10-06 16:58:49] 2025-10-06 14:52:17,179 | INFO     | sum of deviations: 11078174559.000013
[2025-10-06 16:58:49] 2025-10-06 14:52:17,179 | INFO     | mean x: 1759757852.0
[2025-10-06 16:58:49] 2025-10-06 14:52:17,179 | INFO     | mean y: 2326006.284671533
[2025-10-06 16:58:49] 2025-10-06 14:52:17,179 | INFO     | -- intersect: -24449096487.011482
[2025-10-06 16:58:49] 2025-10-06 14:52:17,179 | INFO     | intersect: -24449096487.011482
[2025-10-06 16:58:49] 2025-10-06 14:52:17,180 | INFO     | chi2: 1.4396059921079785
[2025-10-06 16:58:49] 2025-10-06 14:52:17,180 | INFO     | current chi2=1.4396059921079785 (change=35.67678908224769 %)
[2025-10-06 16:58:49] 2025-10-06 14:52:17,180 | INFO     | sum of square deviations: 713140813.0
[2025-10-06 16:58:49] 2025-10-06 14:52:17,181 | INFO     | sum of deviations: 10846946342.5
[2025-10-06 16:58:49] 2025-10-06 14:52:17,181 | INFO     | mean x: 1759757699.5
[2025-10-06 16:58:49] 2025-10-06 14:52:17,181 | INFO     | mean y: 2325587.0984848486
[2025-10-06 16:58:49] 2025-10-06 14:52:17,181 | INFO     | -- intersect: -26763773049.12939
[2025-10-06 16:58:49] 2025-10-06 14:52:17,181 | INFO     | intersect: -26763773049.12939
[2025-10-06 16:58:49] 2025-10-06 14:52:17,181 | INFO     | chi2: 1.441477676904531
[2025-10-06 16:58:49] 2025-10-06 14:52:17,181 | INFO     | current chi2=1.441477676904531 (change=-0.1300136847730031 %)
[2025-10-06 16:58:49] 2025-10-06 14:52:17,182 | INFO     | right removable region: 131
[2025-10-06 16:58:49] 2025-10-06 14:52:17,182 | INFO     | sum of square deviations: 797291228.0
[2025-10-06 16:58:49] 2025-10-06 14:52:17,183 | INFO     | sum of deviations: -17105704302.000002
[2025-10-06 16:58:49] 2025-10-06 14:52:17,183 | INFO     | mean x: 1759758157.0
[2025-10-06 16:58:49] 2025-10-06 14:52:17,183 | INFO     | mean y: 2343650.284671533
[2025-10-06 16:58:49] 2025-10-06 14:52:17,183 | INFO     | -- intersect: 37757559836.70243
[2025-10-06 16:58:49] 2025-10-06 14:52:17,183 | INFO     | intersect: 37757559836.70243
[2025-10-06 16:58:49] 2025-10-06 14:52:17,183 | INFO     | chi2: 0.8487400806496825
[2025-10-06 16:58:49] 2025-10-06 14:52:17,183 | INFO     | current chi2=0.8487400806496825 (change=62.0773409382386 %)
[2025-10-06 16:58:49] 2025-10-06 14:52:17,184 | INFO     | sum of square deviations: 713140813.0
[2025-10-06 16:58:49] 2025-10-06 14:52:17,184 | INFO     | sum of deviations: -16774680329.5
[2025-10-06 16:58:49] 2025-10-06 14:52:17,184 | INFO     | mean x: 1759758309.5
[2025-10-06 16:58:49] 2025-10-06 14:52:17,184 | INFO     | mean y: 2343014.2954545454
[2025-10-06 16:58:49] 2025-10-06 14:52:17,185 | INFO     | -- intersect: 41395827387.82804
[2025-10-06 16:58:49] 2025-10-06 14:52:17,185 | INFO     | intersect: 41395827387.82804
[2025-10-06 16:58:49] 2025-10-06 14:52:17,185 | INFO     | chi2: 0.8448389110414246
[2025-10-06 16:58:49] 2025-10-06 14:52:17,185 | INFO     | current chi2=0.8448389110414246 (change=0.45964243909297997 %)
[2025-10-06 16:58:49] 2025-10-06 14:52:17,185 | INFO     | left removable region: 20
[2025-10-06 16:58:49] 2025-10-06 14:52:17,185 | INFO     | sum of square deviations: 424045160.0
[2025-10-06 16:58:49] 2025-10-06 14:52:17,186 | INFO     | sum of deviations: -5543833110.0
[2025-10-06 16:58:49] 2025-10-06 14:52:17,186 | INFO     | mean x: 1759758279.0
[2025-10-06 16:58:49] 2025-10-06 14:52:17,186 | INFO     | mean y: 2356423.3333333335
[2025-10-06 16:58:49] 2025-10-06 14:52:17,186 | INFO     | -- intersect: 23008882928.00283
[2025-10-06 16:58:49] 2025-10-06 14:52:17,186 | INFO     | intersect: 23008882928.00283
[2025-10-06 16:58:49] 2025-10-06 14:52:17,186 | INFO     | chi2: 0.014027705871806547
[2025-10-06 16:58:49] 2025-10-06 14:52:17,187 | INFO     | -- intersect: 23008882928.00283
[2025-10-06 16:58:49] 2025-10-06 14:52:17,187 | INFO     | current memory leak: -13.07 B/s (using 111 data points, chi2=0.01)
[2025-10-06 16:58:49] 2025-10-06 14:52:17,187 | INFO     | could have reported an average CPU frequency of 2670 MHz (8 samples)
[2025-10-06 16:58:49] 2025-10-06 14:52:17,187 | INFO     | ..............................
[2025-10-06 16:58:49] 2025-10-06 14:52:17,187 | INFO     | . Timing measurements:
[2025-10-06 16:58:49] 2025-10-06 14:52:17,187 | INFO     | . get job = 0 s
[2025-10-06 16:58:49] 2025-10-06 14:52:17,188 | INFO     | . initial setup = 1 s
[2025-10-06 16:58:49] 2025-10-06 14:52:17,188 | INFO     | . payload setup = 5 s
[2025-10-06 16:58:49] 2025-10-06 14:52:17,188 | INFO     | . stage-in = 0 s
[2025-10-06 16:58:49] 2025-10-06 14:52:17,188 | INFO     | . payload execution = 8626 s
[2025-10-06 16:58:49] 2025-10-06 14:52:17,188 | INFO     | . stage-out = 1 s
[2025-10-06 16:58:49] 2025-10-06 14:52:17,188 | INFO     | . log creation = 0 s
[2025-10-06 16:58:49] 2025-10-06 14:52:17,188 | INFO     | ..............................
[2025-10-06 16:58:49] 2025-10-06 14:52:17,287 | INFO     | 
[2025-10-06 16:58:49] 2025-10-06 14:52:17,288 | INFO     | job summary report
[2025-10-06 16:58:49] 2025-10-06 14:52:17,288 | INFO     | --------------------------------------------------
[2025-10-06 16:58:49] 2025-10-06 14:52:17,288 | INFO     | PanDA job id: 6830321615
[2025-10-06 16:58:49] 2025-10-06 14:52:17,288 | INFO     | task id: 46376905
[2025-10-06 16:58:49] 2025-10-06 14:52:17,288 | INFO     | errors: (none)
[2025-10-06 16:58:49] 2025-10-06 14:52:17,288 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-06 16:58:49] 2025-10-06 14:52:17,288 | INFO     | pilot state: finished 
[2025-10-06 16:58:49] 2025-10-06 14:52:17,288 | INFO     | transexitcode: 0
[2025-10-06 16:58:49] 2025-10-06 14:52:17,288 | INFO     | exeerrorcode: 0
[2025-10-06 16:58:49] 2025-10-06 14:52:17,288 | INFO     | exeerrordiag: 
[2025-10-06 16:58:49] 2025-10-06 14:52:17,289 | INFO     | exitcode: 0
[2025-10-06 16:58:49] 2025-10-06 14:52:17,289 | INFO     | exitmsg: OK
[2025-10-06 16:58:49] 2025-10-06 14:52:17,289 | INFO     | cpuconsumptiontime: 33112 s
[2025-10-06 16:58:49] 2025-10-06 14:52:17,289 | INFO     | nevents: 400
[2025-10-06 16:58:49] 2025-10-06 14:52:17,289 | INFO     | neventsw: 0
[2025-10-06 16:58:49] 2025-10-06 14:52:17,289 | INFO     | pid: 566535
[2025-10-06 16:58:49] 2025-10-06 14:52:17,289 | INFO     | pgrp: 566535
[2025-10-06 16:58:49] 2025-10-06 14:52:17,289 | INFO     | corecount: 4
[2025-10-06 16:58:49] 2025-10-06 14:52:17,289 | INFO     | event service: False
[2025-10-06 16:58:49] 2025-10-06 14:52:17,289 | INFO     | sizes: {0: 2348827, 4: 2349089, 11: 2349117, 8635: 2377146, 8636: 2377145, 8637: 2386221, 8638: 2386405, 8643: 2386599}
[2025-10-06 16:58:49] 2025-10-06 14:52:17,289 | INFO     | --------------------------------------------------
[2025-10-06 16:58:49] 2025-10-06 14:52:17,289 | INFO     | 
[2025-10-06 16:58:49] 2025-10-06 14:52:17,290 | INFO     | executing command: ls -lF /scratch/boinc/var/slot40/slots/0
[2025-10-06 16:58:49] 2025-10-06 14:52:17,311 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-06 16:58:49] 2025-10-06 14:52:17,312 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-06 16:58:49] 2025-10-06 14:52:17,312 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-06 16:58:49] 2025-10-06 14:52:17,312 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-06 16:58:49] 2025-10-06 14:52:17,312 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-06 16:58:49] 2025-10-06 14:52:17,312 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-06 16:58:49] 2025-10-06 14:52:17,312 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-06 16:58:49] 2025-10-06 14:52:17,312 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-06 16:58:49] 2025-10-06 14:52:17,312 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-06 16:58:49] 2025-10-06 14:52:17,312 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-06 16:58:49] 2025-10-06 14:52:17,312 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-06 16:58:49] 2025-10-06 14:52:17,313 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-06 16:58:49] 2025-10-06 14:52:17,313 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-06 16:58:49] 2025-10-06 14:52:17,313 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-06 16:58:49] 2025-10-06 14:52:17,313 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-06 16:58:49] 2025-10-06 14:52:17,313 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-06 16:58:49] 2025-10-06 14:52:17,313 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-06 16:58:49] 2025-10-06 14:52:17,313 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-06 16:58:49] 2025-10-06 14:52:17,313 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-06 16:58:49] 2025-10-06 14:52:17,313 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-06 16:58:49] 2025-10-06 14:52:17,313 | INFO     | job 6830321615 has completed (purged errors)
[2025-10-06 16:58:49] 2025-10-06 14:52:17,314 | INFO     | overall cleanup function is called
[2025-10-06 16:58:49] 2025-10-06 14:52:18,320 | INFO     | --- collectZombieJob: --- 10, [566535]
[2025-10-06 16:58:49] 2025-10-06 14:52:18,321 | INFO     | zombie collector waiting for pid 566535
[2025-10-06 16:58:49] 2025-10-06 14:52:18,321 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-06 16:58:49] 2025-10-06 14:52:18,321 | INFO     | collected zombie processes
[2025-10-06 16:58:49] 2025-10-06 14:52:18,321 | INFO     | will attempt to kill all subprocesses of pid=566535
[2025-10-06 16:58:49] 2025-10-06 14:52:18,670 | INFO     | process IDs to be killed: [566535] (in reverse order)
[2025-10-06 16:58:49] 2025-10-06 14:52:18,780 | WARNING  | found no corresponding commands to process id(s)
[2025-10-06 16:58:49] 2025-10-06 14:52:18,780 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-06 16:58:49] 2025-10-06 14:52:18,791 | INFO     | did not find any defunct processes belonging to 566535
[2025-10-06 16:58:49] 2025-10-06 14:52:18,802 | INFO     | did not find any defunct processes belonging to 566535
[2025-10-06 16:58:49] 2025-10-06 14:52:18,802 | INFO     | ready for new job
[2025-10-06 16:58:49] 2025-10-06 14:52:18,802 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-06 16:58:49] 2025-10-06 14:52:18,805 | INFO     | ***************************************
[2025-10-06 16:58:49] 2025-10-06 14:52:18,805 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-06 16:58:49] 2025-10-06 14:52:18,805 | INFO     | ***************************************
[2025-10-06 16:58:49] 2025-10-06 14:52:18,805 | INFO     | 
[2025-10-06 16:58:49] 2025-10-06 14:52:18,809 | INFO     | architecture information:
[2025-10-06 16:58:49] 2025-10-06 14:52:18,809 | INFO     | executing command: cat /etc/os-release
[2025-10-06 16:58:49] 2025-10-06 14:52:18,824 | INFO     | cat /etc/os-release:
[2025-10-06 16:58:49] NAME="CentOS Linux"
[2025-10-06 16:58:49] VERSION="7 (Core)"
[2025-10-06 16:58:49] ID="centos"
[2025-10-06 16:58:49] ID_LIKE="rhel fedora"
[2025-10-06 16:58:49] VERSION_ID="7"
[2025-10-06 16:58:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-06 16:58:49] ANSI_COLOR="0;31"
[2025-10-06 16:58:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-06 16:58:49] HOME_URL="https://www.centos.org/"
[2025-10-06 16:58:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-06 16:58:49] 
[2025-10-06 16:58:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-06 16:58:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-06 16:58:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-06 16:58:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-06 16:58:49] 
[2025-10-06 16:58:49] 2025-10-06 14:52:18,825 | INFO     | ***************************************
[2025-10-06 16:58:49] 2025-10-06 14:52:19,328 | INFO     | executing command: df -mP /scratch/boinc/var/slot40/slots/0
[2025-10-06 16:58:49] 2025-10-06 14:52:19,345 | INFO     | sufficient remaining disk space (690271289344 B)
[2025-10-06 16:58:49] 2025-10-06 14:52:19,346 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-06 16:58:49] 2025-10-06 14:52:19,346 | INFO     | current server update state: UPDATING_FINAL
[2025-10-06 16:58:49] 2025-10-06 14:52:19,346 | INFO     | update_server=False
[2025-10-06 16:58:49] 2025-10-06 14:52:19,346 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-06 16:58:49] 2025-10-06 14:52:19,346 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-06 16:58:49] 2025-10-06 14:52:19,629 | INFO     | all data control threads have been joined
[2025-10-06 16:58:49] 2025-10-06 14:52:19,676 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-06 16:58:49] 2025-10-06 14:52:19,676 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-06 16:58:49] 2025-10-06 14:52:19,677 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-06 16:58:49] 2025-10-06 14:52:19,677 | INFO     | will abort loop
[2025-10-06 16:58:49] 2025-10-06 14:52:20,254 | INFO     | all payload control threads have been joined
[2025-10-06 16:58:49] 2025-10-06 14:52:20,347 | INFO     | [job] retrieve thread has finished
[2025-10-06 16:58:49] 2025-10-06 14:52:20,531 | INFO     | [payload] validate_post thread has finished
[2025-10-06 16:58:49] 2025-10-06 14:52:20,631 | INFO     | [data] control thread has finished
[2025-10-06 16:58:49] 2025-10-06 14:52:20,682 | INFO     | [job] job monitor thread has finished
[2025-10-06 16:58:49] 2025-10-06 14:52:20,839 | INFO     | [payload] execute_payloads thread has finished
[2025-10-06 16:58:49] 2025-10-06 14:52:20,896 | INFO     | [job] validate thread has finished
[2025-10-06 16:58:49] 2025-10-06 14:52:20,907 | INFO     | [data] copytool_in thread has finished
[2025-10-06 16:58:49] 2025-10-06 14:52:21,032 | INFO     | all job control threads have been joined
[2025-10-06 16:58:49] 2025-10-06 14:52:21,110 | INFO     | [job] create_data_payload thread has finished
[2025-10-06 16:58:49] 2025-10-06 14:52:21,221 | INFO     | [payload] validate_pre thread has finished
[2025-10-06 16:58:49] 2025-10-06 14:52:21,254 | INFO     | [payload] control thread has finished
[2025-10-06 16:58:49] 2025-10-06 14:52:21,348 | INFO     | [data] copytool_out thread has finished
[2025-10-06 16:58:49] 2025-10-06 14:52:21,554 | INFO     | [payload] failed_post thread has finished
[2025-10-06 16:58:49] 2025-10-06 14:52:21,787 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-06 16:58:49] 2025-10-06 14:52:22,037 | INFO     | [job] control thread has finished
[2025-10-06 16:58:49] 2025-10-06 14:52:22,297 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-06 16:58:49] 2025-10-06 14:52:22,304 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-06 16:58:49] 2025-10-06 14:52:23,302 | INFO     | [job] queue monitor thread has finished
[2025-10-06 16:58:49] 2025-10-06 14:52:26,310 | INFO     | [data] queue_monitor thread has finished
[2025-10-06 16:58:49] 2025-10-06 14:52:50,462 | INFO     | PID=530753 has CPU usage=7.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-06 16:58:49] 2025-10-06 14:52:50,462 | INFO     | .. there are 9 such processes running
[2025-10-06 16:58:49] 2025-10-06 14:52:50,463 | INFO     | found 0 job(s) in 20 queues
[2025-10-06 16:58:49] 2025-10-06 14:52:50,463 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-06 16:58:49] 2025-10-06 14:52:50,463 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-06 16:58:49] 2025-10-06 14:53:11,810 | INFO     | [monitor] cgroup control has ended
[2025-10-06 16:58:49] 2025-10-06 14:53:13,803 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22860942993216)>', '<ExcThread(monitor, started 22860707886848)>']
[2025-10-06 16:58:49] 2025-10-06 14:53:14,567 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-06 16:58:49] 2025-10-06 14:53:14,568 | INFO     | [monitor] control thread has ended
[2025-10-06 16:58:49] 2025-10-06 14:53:18,827 | INFO     | all workflow threads have been joined
[2025-10-06 16:58:49] 2025-10-06 14:53:18,827 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-06 16:58:49] 2025-10-06 14:53:18,827 | INFO     | traces error code: 0
[2025-10-06 16:58:49] 2025-10-06 14:53:18,828 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-06 16:58:49] 2025-10-06 14:53:18,978 [wrapper] ==== pilot stdout END ====
[2025-10-06 16:58:49] 2025-10-06 14:53:18,980 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-06 16:58:49] 2025-10-06 14:53:18,983 [wrapper] pilotpid: 530753
[2025-10-06 16:58:49] 2025-10-06 14:53:18,986 [wrapper] Pilot exit status: 0
[2025-10-06 16:58:49] 2025-10-06 14:53:18,997 [wrapper] pandaids: 6830321615 6830321615
[2025-10-06 16:58:49] 2025-10-06 14:53:19,067 [wrapper] cleanup supervisor_pilot  960122 530754
[2025-10-06 16:58:49] 2025-10-06 14:53:19,070 [wrapper] Test setup, not cleaning
[2025-10-06 16:58:49] 2025-10-06 14:53:19,074 [wrapper] apfmon messages muted
[2025-10-06 16:58:49] 2025-10-06 14:53:19,077 [wrapper] ==== wrapper stdout END ====
[2025-10-06 16:58:49] 2025-10-06 14:53:19,079 [wrapper] ==== wrapper stderr END ====
[2025-10-06 16:58:49]  *** Error codes and diagnostics ***
[2025-10-06 16:58:49]     "exeErrorCode": 0,
[2025-10-06 16:58:49]     "exeErrorDiag": "",
[2025-10-06 16:58:49]     "pilotErrorCode": 0,
[2025-10-06 16:58:49]     "pilotErrorDiag": "",
[2025-10-06 16:58:49]  *** Listing of results directory ***
[2025-10-06 16:58:49] total 601816
[2025-10-06 16:58:49] drwx------ 4 boinc boinc      4096 Jul 31 15:00 pilot3
[2025-10-06 16:58:49] -rw-r--r-- 1 boinc boinc    552446 Oct  4 23:00 pilot3.tar.gz
[2025-10-06 16:58:49] -rwx------ 1 boinc boinc     36292 Oct  4 23:11 runpilot2-wrapper.sh
[2025-10-06 16:58:49] -rw-r--r-- 1 boinc boinc      5112 Oct  4 23:11 queuedata.json
[2025-10-06 16:58:49] -rw-r--r-- 1 boinc boinc       100 Oct  6 12:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-06 16:58:49] -rwxr-xr-x 1 boinc boinc      7986 Oct  6 12:50 run_atlas
[2025-10-06 16:58:49] -rw-r--r-- 1 boinc boinc       105 Oct  6 12:50 job.xml
[2025-10-06 16:58:49] -rw-r--r-- 3 boinc boinc 216206488 Oct  6 13:39 EVNT.46376901._002466.pool.root.1
[2025-10-06 16:58:49] -rw-r--r-- 3 boinc boinc 216206488 Oct  6 13:39 ATLAS.root_0
[2025-10-06 16:58:49] -rw-r--r-- 2 boinc boinc    565604 Oct  6 13:39 input.tar.gz
[2025-10-06 16:58:49] -rw-r--r-- 2 boinc boinc     15120 Oct  6 13:39 start_atlas.sh
[2025-10-06 16:58:49] drwxrwx--x 2 boinc boinc      4096 Oct  6 13:39 shared
[2025-10-06 16:58:49] -rw-r--r-- 1 boinc boinc         0 Oct  6 13:39 boinc_lockfile
[2025-10-06 16:58:49] -rw-r--r-- 1 boinc boinc      6636 Oct  6 14:27 init_data.xml
[2025-10-06 16:58:49] -rw-r--r-- 1 boinc boinc      2519 Oct  6 14:27 pandaJob.out
[2025-10-06 16:58:49] -rw------- 1 boinc boinc    975008 Oct  6 14:27 agis_schedconf.cvmfs.json
[2025-10-06 16:58:49] -rw-r--r-- 1 boinc boinc       528 Oct  6 16:51 boinc_task_state.xml
[2025-10-06 16:58:49] -rw------- 1 boinc boinc 176838528 Oct  6 16:51 HITS.46376905._068035.pool.root.1
[2025-10-06 16:58:49] -rw------- 1 boinc boinc      1032 Oct  6 16:52 memory_monitor_summary.json
[2025-10-06 16:58:49] -rw------- 1 boinc boinc        97 Oct  6 16:52 pilot_heartbeat.json
[2025-10-06 16:58:49] -rw------- 1 boinc boinc   1560401 Oct  6 16:52 agis_ddmendpoints.agis.ALL.json
[2025-10-06 16:58:49] -rw------- 1 boinc boinc    315990 Oct  6 16:52 log.46376905._068035.job.log.tgz.1
[2025-10-06 16:58:49] -rw------- 1 boinc boinc      7827 Oct  6 16:52 heartbeat.json
[2025-10-06 16:58:49] -rw------- 1 boinc boinc      5018 Oct  6 16:53 pilotlog.txt
[2025-10-06 16:58:49] -rw------- 1 boinc boinc   1239124 Oct  6 16:53 log.46376905._068035.job.log.1
[2025-10-06 16:58:49] -rw------- 1 boinc boinc       357 Oct  6 16:53 output.list
[2025-10-06 16:58:49] -rw-r--r-- 1 boinc boinc       620 Oct  6 16:53 runtime_log
[2025-10-06 16:58:49] -rw------- 1 boinc boinc   1576960 Oct  6 16:53 result.tar.gz
[2025-10-06 16:58:49] -rw-r--r-- 1 boinc boinc      9146 Oct  6 16:53 runtime_log.err
[2025-10-06 16:58:49] -rw------- 1 boinc boinc       787 Oct  6 16:53 9YeKDmYiOP8n9Rq4apOajLDm4fhM0noT9bVof3QYDmkTEMDm0uS5Fo.diag
[2025-10-06 16:58:49] -rw-r--r-- 1 boinc boinc        26 Oct  6 16:58 wrapper_checkpoint.txt
[2025-10-06 16:58:49] -rw-r--r-- 1 boinc boinc      8192 Oct  6 16:58 boinc_mmap_file
[2025-10-06 16:58:49] -rw-r--r-- 1 boinc boinc     22630 Oct  6 16:58 stderr.txt
[2025-10-06 16:58:49] HITS file was successfully produced:
[2025-10-06 16:58:49] -rw------- 1 boinc boinc 176838528 Oct  6 16:51 shared/HITS.pool.root.1
[2025-10-06 16:58:49]  *** Contents of shared directory: ***
[2025-10-06 16:58:49] total 385956
[2025-10-06 16:58:49] -rw-r--r-- 3 boinc boinc 216206488 Oct  6 13:39 ATLAS.root_0
[2025-10-06 16:58:49] -rw-r--r-- 2 boinc boinc    565604 Oct  6 13:39 input.tar.gz
[2025-10-06 16:58:49] -rw-r--r-- 2 boinc boinc     15120 Oct  6 13:39 start_atlas.sh
[2025-10-06 16:58:49] -rw------- 1 boinc boinc 176838528 Oct  6 16:51 HITS.pool.root.1
[2025-10-06 16:58:49] -rw------- 1 boinc boinc   1576960 Oct  6 16:53 result.tar.gz
16:58:50 (518028): run_atlas exited; CPU time 33422.975465
16:58:50 (518028): called boinc_finish(0)

</stderr_txt>
]]>

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