Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:45:22 (3766): wrapper (7.7.26015): starting
00:45:22 (3766): wrapper: running run_atlas (--nthreads 8)
[2025-10-07 00:45:22] Arguments: --nthreads 8
[2025-10-07 00:45:22] Threads: 8
[2025-10-07 00:45:22] Checking for CVMFS
[2025-10-07 00:45:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-07 00:45:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-07 00:45:23] Running cvmfs_config stat atlas.cern.ch
[2025-10-07 00:45:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-07 00:45:23] 2.11.2.0 13026 212511 138228 151415 1 155 23092218 25165824 4147 130560 0 117176391 99.886 63316703 3637 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-07 00:45:23] CVMFS is ok
[2025-10-07 00:45:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-07 00:45:23] Checking for apptainer binary...
[2025-10-07 00:45:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-07 00:45:23] Running /usr/bin/apptainer --version
[2025-10-07 00:45:23] apptainer version 1.3.2-1.el7
[2025-10-07 00:45:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-07 00:45:24] cg-vwn329.simple-grid.lan
[2025-10-07 00:45:24] apptainer works
[2025-10-07 00:45:24] Set ATHENA_PROC_NUMBER=8
[2025-10-07 00:45:24] Set ATHENA_CORE_NUMBER=8
[2025-10-07 00:45:24] Starting ATLAS job with PandaID=6829874308
[2025-10-07 00:45:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-07 04:28:11]  *** The last 200 lines of the pilot log: ***
[2025-10-07 04:28:11] 2025-10-07 02:27:18,830 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-07 04:28:11] 2025-10-07 02:27:18,831 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-10-07 04:28:11] 2025-10-07 02:27:18,833 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6829874308/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 04:28:11] 2025-10-07 02:27:18,834 | INFO     | extracted standard info from prmon json
[2025-10-07 04:28:11] 2025-10-07 02:27:18,834 | INFO     | extracted standard memory fields from prmon json
[2025-10-07 04:28:11] 2025-10-07 02:27:18,834 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-07 04:28:11] 2025-10-07 02:27:18,835 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-07 04:28:11] 2025-10-07 02:27:18,835 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-07 04:28:11] 2025-10-07 02:27:18,840 | INFO     | fitting pss+swap vs Time
[2025-10-07 04:28:11] 2025-10-07 02:27:18,841 | INFO     | sum of square deviations: 3168461268.0
[2025-10-07 04:28:11] 2025-10-07 02:27:18,842 | INFO     | sum of deviations: 3613326704.000001
[2025-10-07 04:28:11] 2025-10-07 02:27:18,843 | INFO     | mean x: 1759797379.0
[2025-10-07 04:28:11] 2025-10-07 02:27:18,843 | INFO     | mean y: 2499213.949308756
[2025-10-07 04:28:11] 2025-10-07 02:27:18,843 | INFO     | -- intersect: -2004381200.6513314
[2025-10-07 04:28:11] 2025-10-07 02:27:18,843 | INFO     | intersect: -2004381200.6513314
[2025-10-07 04:28:11] 2025-10-07 02:27:18,844 | INFO     | chi2: 1.6588036409452007
[2025-10-07 04:28:11] 2025-10-07 02:27:18,844 | INFO     | sum of square deviations: 2954447953.0
[2025-10-07 04:28:11] 2025-10-07 02:27:18,846 | INFO     | sum of deviations: 3668734925.499999
[2025-10-07 04:28:11] 2025-10-07 02:27:18,846 | INFO     | mean x: 1759797226.5
[2025-10-07 04:28:11] 2025-10-07 02:27:18,846 | INFO     | mean y: 2499253.466981132
[2025-10-07 04:28:11] 2025-10-07 02:27:18,846 | INFO     | -- intersect: -2182758246.1964707
[2025-10-07 04:28:11] 2025-10-07 02:27:18,847 | INFO     | intersect: -2182758246.1964707
[2025-10-07 04:28:11] 2025-10-07 02:27:18,847 | INFO     | chi2: 1.6592863504222246
[2025-10-07 04:28:11] 2025-10-07 02:27:18,847 | INFO     | current chi2=1.6592863504222246 (change=-0.02909985637292419 %)
[2025-10-07 04:28:11] 2025-10-07 02:27:18,847 | INFO     | right removable region: 211
[2025-10-07 04:28:11] 2025-10-07 02:27:18,848 | INFO     | sum of square deviations: 2954447953.0
[2025-10-07 04:28:11] 2025-10-07 02:27:18,849 | INFO     | sum of deviations: -29705825170.500004
[2025-10-07 04:28:11] 2025-10-07 02:27:18,850 | INFO     | mean x: 1759797531.5
[2025-10-07 04:28:11] 2025-10-07 02:27:18,850 | INFO     | mean y: 2522708.400943396
[2025-10-07 04:28:11] 2025-10-07 02:27:18,850 | INFO     | -- intersect: 17696602495.162537
[2025-10-07 04:28:11] 2025-10-07 02:27:18,850 | INFO     | intersect: 17696602495.162537
[2025-10-07 04:28:11] 2025-10-07 02:27:18,850 | INFO     | chi2: 0.16861743688583372
[2025-10-07 04:28:11] 2025-10-07 02:27:18,850 | INFO     | current chi2=0.16861743688583372 (change=89.83499717966895 %)
[2025-10-07 04:28:11] 2025-10-07 02:27:18,851 | INFO     | sum of square deviations: 2750295288.0
[2025-10-07 04:28:11] 2025-10-07 02:27:18,853 | INFO     | sum of deviations: -27635315438.000004
[2025-10-07 04:28:11] 2025-10-07 02:27:18,853 | INFO     | mean x: 1759797684.0
[2025-10-07 04:28:11] 2025-10-07 02:27:18,853 | INFO     | mean y: 2521121.4879227052
[2025-10-07 04:28:11] 2025-10-07 02:27:18,853 | INFO     | -- intersect: 17685191166.625946
[2025-10-07 04:28:11] 2025-10-07 02:27:18,853 | INFO     | intersect: 17685191166.625946
[2025-10-07 04:28:11] 2025-10-07 02:27:18,854 | INFO     | chi2: 0.1538482998894845
[2025-10-07 04:28:11] 2025-10-07 02:27:18,854 | INFO     | current chi2=0.1538482998894845 (change=8.758961866054811 %)
[2025-10-07 04:28:11] 2025-10-07 02:27:18,854 | INFO     | left removable region: 20
[2025-10-07 04:28:11] 2025-10-07 02:27:18,854 | INFO     | sum of square deviations: 2160561440.0
[2025-10-07 04:28:11] 2025-10-07 02:27:18,856 | INFO     | sum of deviations: -13717177299.0
[2025-10-07 04:28:11] 2025-10-07 02:27:18,856 | INFO     | mean x: 1759797806.0
[2025-10-07 04:28:11] 2025-10-07 02:27:18,856 | INFO     | mean y: 2510693.6858638744
[2025-10-07 04:28:11] 2025-10-07 02:27:18,856 | INFO     | -- intersect: 11175281839.362333
[2025-10-07 04:28:11] 2025-10-07 02:27:18,856 | INFO     | intersect: 11175281839.362333
[2025-10-07 04:28:11] 2025-10-07 02:27:18,856 | INFO     | chi2: 0.11203703650788609
[2025-10-07 04:28:11] 2025-10-07 02:27:18,857 | INFO     | -- intersect: 11175281839.362333
[2025-10-07 04:28:11] 2025-10-07 02:27:18,857 | INFO     | current memory leak: -6.35 B/s (using 191 data points, chi2=0.11)
[2025-10-07 04:28:11] 2025-10-07 02:27:18,857 | INFO     | could have reported an average CPU frequency of 1999 MHz (10 samples)
[2025-10-07 04:28:11] 2025-10-07 02:27:18,858 | INFO     | ..............................
[2025-10-07 04:28:11] 2025-10-07 02:27:18,858 | INFO     | . Timing measurements:
[2025-10-07 04:28:11] 2025-10-07 02:27:18,858 | INFO     | . get job = 0 s
[2025-10-07 04:28:11] 2025-10-07 02:27:18,858 | INFO     | . initial setup = 1 s
[2025-10-07 04:28:11] 2025-10-07 02:27:18,858 | INFO     | . payload setup = 10 s
[2025-10-07 04:28:11] 2025-10-07 02:27:18,858 | INFO     | . stage-in = 0 s
[2025-10-07 04:28:11] 2025-10-07 02:27:18,858 | INFO     | . payload execution = 13249 s
[2025-10-07 04:28:11] 2025-10-07 02:27:18,858 | INFO     | . stage-out = 1 s
[2025-10-07 04:28:11] 2025-10-07 02:27:18,859 | INFO     | . log creation = 0 s
[2025-10-07 04:28:11] 2025-10-07 02:27:18,859 | INFO     | ..............................
[2025-10-07 04:28:11] 2025-10-07 02:27:19,421 | INFO     | 
[2025-10-07 04:28:11] 2025-10-07 02:27:19,421 | INFO     | job summary report
[2025-10-07 04:28:11] 2025-10-07 02:27:19,421 | INFO     | --------------------------------------------------
[2025-10-07 04:28:11] 2025-10-07 02:27:19,421 | INFO     | PanDA job id: 6829874308
[2025-10-07 04:28:11] 2025-10-07 02:27:19,421 | INFO     | task id: 46376905
[2025-10-07 04:28:11] 2025-10-07 02:27:19,421 | INFO     | errors: (none)
[2025-10-07 04:28:11] 2025-10-07 02:27:19,421 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-07 04:28:11] 2025-10-07 02:27:19,421 | INFO     | pilot state: finished 
[2025-10-07 04:28:11] 2025-10-07 02:27:19,422 | INFO     | transexitcode: 0
[2025-10-07 04:28:11] 2025-10-07 02:27:19,422 | INFO     | exeerrorcode: 0
[2025-10-07 04:28:11] 2025-10-07 02:27:19,422 | INFO     | exeerrordiag: 
[2025-10-07 04:28:11] 2025-10-07 02:27:19,422 | INFO     | exitcode: 0
[2025-10-07 04:28:11] 2025-10-07 02:27:19,422 | INFO     | exitmsg: OK
[2025-10-07 04:28:11] 2025-10-07 02:27:19,422 | INFO     | cpuconsumptiontime: 50444 s
[2025-10-07 04:28:11] 2025-10-07 02:27:19,422 | INFO     | nevents: 400
[2025-10-07 04:28:11] 2025-10-07 02:27:19,422 | INFO     | neventsw: 0
[2025-10-07 04:28:11] 2025-10-07 02:27:19,422 | INFO     | pid: 14009
[2025-10-07 04:28:11] 2025-10-07 02:27:19,422 | INFO     | pgrp: 14009
[2025-10-07 04:28:11] 2025-10-07 02:27:19,422 | INFO     | corecount: 8
[2025-10-07 04:28:11] 2025-10-07 02:27:19,422 | INFO     | event service: False
[2025-10-07 04:28:11] 2025-10-07 02:27:19,423 | INFO     | sizes: {0: 2348765, 7: 2349027, 11: 2349055, 13263: 2378958, 13266: 2387956, 13267: 2388012, 13278: 2388334}
[2025-10-07 04:28:11] 2025-10-07 02:27:19,423 | INFO     | --------------------------------------------------
[2025-10-07 04:28:11] 2025-10-07 02:27:19,423 | INFO     | 
[2025-10-07 04:28:11] 2025-10-07 02:27:19,423 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2025-10-07 04:28:11] 2025-10-07 02:27:19,448 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-07 04:28:11] 2025-10-07 02:27:19,449 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-07 04:28:11] 2025-10-07 02:27:19,449 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-07 04:28:11] 2025-10-07 02:27:19,449 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-07 04:28:11] 2025-10-07 02:27:19,449 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-07 04:28:11] 2025-10-07 02:27:19,449 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-07 04:28:11] 2025-10-07 02:27:19,449 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-07 04:28:11] 2025-10-07 02:27:19,449 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-07 04:28:11] 2025-10-07 02:27:19,449 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-07 04:28:11] 2025-10-07 02:27:19,449 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-07 04:28:11] 2025-10-07 02:27:19,449 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-07 04:28:11] 2025-10-07 02:27:19,450 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-07 04:28:11] 2025-10-07 02:27:19,450 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-07 04:28:11] 2025-10-07 02:27:19,450 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-07 04:28:11] 2025-10-07 02:27:19,450 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-07 04:28:11] 2025-10-07 02:27:19,450 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-07 04:28:11] 2025-10-07 02:27:19,450 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-07 04:28:11] 2025-10-07 02:27:19,450 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-07 04:28:11] 2025-10-07 02:27:19,450 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-07 04:28:11] 2025-10-07 02:27:19,450 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-07 04:28:11] 2025-10-07 02:27:19,450 | INFO     | job 6829874308 has completed (purged errors)
[2025-10-07 04:28:11] 2025-10-07 02:27:19,451 | INFO     | overall cleanup function is called
[2025-10-07 04:28:11] 2025-10-07 02:27:20,459 | INFO     | --- collectZombieJob: --- 10, [14009]
[2025-10-07 04:28:11] 2025-10-07 02:27:20,460 | INFO     | zombie collector waiting for pid 14009
[2025-10-07 04:28:11] 2025-10-07 02:27:20,460 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-07 04:28:11] 2025-10-07 02:27:20,460 | INFO     | collected zombie processes
[2025-10-07 04:28:11] 2025-10-07 02:27:20,460 | INFO     | will attempt to kill all subprocesses of pid=14009
[2025-10-07 04:28:11] 2025-10-07 02:27:20,583 | INFO     | process IDs to be killed: [14009] (in reverse order)
[2025-10-07 04:28:11] 2025-10-07 02:27:20,652 | WARNING  | found no corresponding commands to process id(s)
[2025-10-07 04:28:11] 2025-10-07 02:27:20,653 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-07 04:28:11] 2025-10-07 02:27:20,656 | INFO     | did not find any defunct processes belonging to 14009
[2025-10-07 04:28:11] 2025-10-07 02:27:20,659 | INFO     | did not find any defunct processes belonging to 14009
[2025-10-07 04:28:11] 2025-10-07 02:27:20,660 | INFO     | ready for new job
[2025-10-07 04:28:11] 2025-10-07 02:27:20,660 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-07 04:28:11] 2025-10-07 02:27:20,662 | INFO     | ***************************************
[2025-10-07 04:28:11] 2025-10-07 02:27:20,662 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-07 04:28:11] 2025-10-07 02:27:20,662 | INFO     | ***************************************
[2025-10-07 04:28:11] 2025-10-07 02:27:20,663 | INFO     | 
[2025-10-07 04:28:11] 2025-10-07 02:27:20,663 | INFO     | pilot is running in a VM
[2025-10-07 04:28:11] 2025-10-07 02:27:20,663 | INFO     | architecture information:
[2025-10-07 04:28:11] 2025-10-07 02:27:20,664 | INFO     | executing command: cat /etc/os-release
[2025-10-07 04:28:11] 2025-10-07 02:27:20,692 | INFO     | cat /etc/os-release:
[2025-10-07 04:28:11] NAME="CentOS Linux"
[2025-10-07 04:28:11] VERSION="7 (Core)"
[2025-10-07 04:28:11] ID="centos"
[2025-10-07 04:28:11] ID_LIKE="rhel fedora"
[2025-10-07 04:28:11] VERSION_ID="7"
[2025-10-07 04:28:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-07 04:28:11] ANSI_COLOR="0;31"
[2025-10-07 04:28:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-07 04:28:11] HOME_URL="https://www.centos.org/"
[2025-10-07 04:28:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-07 04:28:11] 
[2025-10-07 04:28:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-07 04:28:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-07 04:28:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-07 04:28:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-07 04:28:11] 
[2025-10-07 04:28:11] 2025-10-07 02:27:20,692 | INFO     | ***************************************
[2025-10-07 04:28:11] 2025-10-07 02:27:21,196 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2025-10-07 04:28:11] 2025-10-07 02:27:21,219 | INFO     | sufficient remaining disk space (496641245184 B)
[2025-10-07 04:28:11] 2025-10-07 02:27:21,220 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-07 04:28:11] 2025-10-07 02:27:21,220 | INFO     | current server update state: UPDATING_FINAL
[2025-10-07 04:28:11] 2025-10-07 02:27:21,220 | INFO     | update_server=False
[2025-10-07 04:28:11] 2025-10-07 02:27:21,220 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-07 04:28:11] 2025-10-07 02:27:21,398 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-07 04:28:11] 2025-10-07 02:27:21,398 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-07 04:28:11] 2025-10-07 02:27:21,398 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-07 04:28:11] 2025-10-07 02:27:21,398 | INFO     | will abort loop
[2025-10-07 04:28:11] 2025-10-07 02:27:21,406 | INFO     | all job control threads have been joined
[2025-10-07 04:28:11] 2025-10-07 02:27:22,063 | INFO     | all payload control threads have been joined
[2025-10-07 04:28:11] 2025-10-07 02:27:22,211 | INFO     | all data control threads have been joined
[2025-10-07 04:28:11] 2025-10-07 02:27:22,227 | INFO     | [job] retrieve thread has finished
[2025-10-07 04:28:11] 2025-10-07 02:27:22,311 | INFO     | [payload] execute_payloads thread has finished
[2025-10-07 04:28:11] 2025-10-07 02:27:22,405 | INFO     | [job] job monitor thread has finished
[2025-10-07 04:28:11] 2025-10-07 02:27:22,412 | INFO     | [job] control thread has finished
[2025-10-07 04:28:11] 2025-10-07 02:27:22,466 | INFO     | [payload] validate_pre thread has finished
[2025-10-07 04:28:11] 2025-10-07 02:27:22,481 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-07 04:28:11] 2025-10-07 02:27:22,825 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-07 04:28:11] 2025-10-07 02:27:22,947 | INFO     | [data] copytool_in thread has finished
[2025-10-07 04:28:11] 2025-10-07 02:27:23,069 | INFO     | [payload] control thread has finished
[2025-10-07 04:28:11] 2025-10-07 02:27:23,177 | INFO     | [job] validate thread has finished
[2025-10-07 04:28:11] 2025-10-07 02:27:23,216 | INFO     | [data] control thread has finished
[2025-10-07 04:28:11] 2025-10-07 02:27:23,231 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-07 04:28:11] 2025-10-07 02:27:23,319 | INFO     | [payload] failed_post thread has finished
[2025-10-07 04:28:11] 2025-10-07 02:27:23,448 | INFO     | [job] create_data_payload thread has finished
[2025-10-07 04:28:11] 2025-10-07 02:27:23,488 | INFO     | [payload] validate_post thread has finished
[2025-10-07 04:28:11] 2025-10-07 02:27:23,996 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-07 04:28:11] 2025-10-07 02:27:24,488 | INFO     | [data] copytool_out thread has finished
[2025-10-07 04:28:11] 2025-10-07 02:27:25,002 | INFO     | [job] queue monitor thread has finished
[2025-10-07 04:28:11] 2025-10-07 02:27:27,240 | INFO     | [data] queue_monitor thread has finished
[2025-10-07 04:28:11] 2025-10-07 02:27:51,806 | INFO     | PID=7495 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-07 04:28:11] 2025-10-07 02:27:51,806 | INFO     | .. there are 9 such processes running
[2025-10-07 04:28:11] 2025-10-07 02:27:51,806 | INFO     | found 0 job(s) in 20 queues
[2025-10-07 04:28:11] 2025-10-07 02:27:51,806 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-07 04:28:11] 2025-10-07 02:27:51,807 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-07 04:28:11] 2025-10-07 02:28:04,674 | INFO     | [monitor] cgroup control has ended
[2025-10-07 04:28:11] 2025-10-07 02:28:06,114 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140229654288192)>', '<ExcThread(monitor, started 140229356787456)>']
[2025-10-07 04:28:11] 2025-10-07 02:28:06,891 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-07 04:28:11] 2025-10-07 02:28:06,891 | INFO     | [monitor] control thread has ended
[2025-10-07 04:28:11] 2025-10-07 02:28:11,140 | INFO     | all workflow threads have been joined
[2025-10-07 04:28:11] 2025-10-07 02:28:11,140 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-07 04:28:11] 2025-10-07 02:28:11,140 | INFO     | traces error code: 0
[2025-10-07 04:28:11] 2025-10-07 02:28:11,140 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-07 04:28:11] 2025-10-07 02:28:11,338 [wrapper] ==== pilot stdout END ====
[2025-10-07 04:28:11] 2025-10-07 02:28:11,358 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-07 04:28:11] 2025-10-07 02:28:11,370 [wrapper] pilotpid: 7495
[2025-10-07 04:28:11] 2025-10-07 02:28:11,385 [wrapper] Pilot exit status: 0
[2025-10-07 04:28:11] 2025-10-07 02:28:11,464 [wrapper] pandaids: 6829874308
[2025-10-07 04:28:11] 2025-10-07 02:28:11,518 [wrapper] cleanup supervisor_pilot  3764 7496
[2025-10-07 04:28:11] 2025-10-07 02:28:11,538 [wrapper] Test setup, not cleaning
[2025-10-07 04:28:11] 2025-10-07 02:28:11,554 [wrapper] apfmon messages muted
[2025-10-07 04:28:11] 2025-10-07 02:28:11,568 [wrapper] ==== wrapper stdout END ====
[2025-10-07 04:28:11] 2025-10-07 02:28:11,576 [wrapper] ==== wrapper stderr END ====
[2025-10-07 04:28:11]  *** Error codes and diagnostics ***
[2025-10-07 04:28:11]     "exeErrorCode": 0,
[2025-10-07 04:28:11]     "exeErrorDiag": "",
[2025-10-07 04:28:11]     "pilotErrorCode": 0,
[2025-10-07 04:28:11]     "pilotErrorDiag": "",
[2025-10-07 04:28:11]  *** Listing of results directory ***
[2025-10-07 04:28:11] total 399024
[2025-10-07 04:28:11] -rw-r--r--. 1 boinc boinc    552446 Oct  4 18:23 pilot3.tar.gz
[2025-10-07 04:28:11] -rw-r--r--. 1 boinc boinc      5112 Oct  4 18:44 queuedata.json
[2025-10-07 04:28:11] -rwx------. 1 boinc boinc     36292 Oct  4 18:44 runpilot2-wrapper.sh
[2025-10-07 04:28:11] -rw-r--r--. 1 boinc boinc       100 Oct  7 00:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-07 04:28:11] -rwxr-xr-x. 1 boinc boinc      7986 Oct  7 00:45 run_atlas
[2025-10-07 04:28:11] -rw-r--r--. 1 boinc boinc       105 Oct  7 00:45 job.xml
[2025-10-07 04:28:11] -rw-r--r--. 2 boinc boinc 216384914 Oct  7 00:45 EVNT.46376901._002283.pool.root.1
[2025-10-07 04:28:11] -rw-r--r--. 1 boinc boinc      6389 Oct  7 00:45 init_data.xml
[2025-10-07 04:28:11] -rw-r--r--. 2 boinc boinc     15120 Oct  7 00:45 start_atlas.sh
[2025-10-07 04:28:11] drwxrwx--x. 2 boinc boinc        68 Oct  7 00:45 shared
[2025-10-07 04:28:11] -rw-r--r--. 2 boinc boinc    565604 Oct  7 00:45 input.tar.gz
[2025-10-07 04:28:11] -rw-r--r--. 1 boinc boinc         0 Oct  7 00:45 boinc_lockfile
[2025-10-07 04:28:11] -rw-r--r--. 1 boinc boinc      2518 Oct  7 00:45 pandaJob.out
[2025-10-07 04:28:11] -rw-------. 1 boinc boinc    975012 Oct  7 00:45 agis_schedconf.cvmfs.json
[2025-10-07 04:28:11] drwx------. 4 boinc boinc      4096 Oct  7 00:45 pilot3
[2025-10-07 04:28:11] -rw-------. 1 boinc boinc 183873900 Oct  7 04:26 HITS.46376905._063174.pool.root.1
[2025-10-07 04:28:11] -rw-r--r--. 1 boinc boinc       530 Oct  7 04:26 boinc_task_state.xml
[2025-10-07 04:28:11] -rw-------. 1 boinc boinc      1017 Oct  7 04:27 memory_monitor_summary.json
[2025-10-07 04:28:11] -rw-------. 1 boinc boinc   1560401 Oct  7 04:27 agis_ddmendpoints.agis.ALL.json
[2025-10-07 04:28:11] -rw-------. 1 boinc boinc    444870 Oct  7 04:27 log.46376905._063174.job.log.tgz.1
[2025-10-07 04:28:11] -rw-------. 1 boinc boinc        95 Oct  7 04:27 pilot_heartbeat.json
[2025-10-07 04:28:11] -rw-------. 1 boinc boinc      7777 Oct  7 04:27 heartbeat.json
[2025-10-07 04:28:11] -rw-r--r--. 1 boinc boinc        28 Oct  7 04:28 wrapper_checkpoint.txt
[2025-10-07 04:28:11] -rw-r--r--. 1 boinc boinc      8192 Oct  7 04:28 boinc_mmap_file
[2025-10-07 04:28:11] -rw-------. 1 boinc boinc      5069 Oct  7 04:28 pilotlog.txt
[2025-10-07 04:28:11] -rw-------. 1 boinc boinc   1786301 Oct  7 04:28 log.46376905._063174.job.log.1
[2025-10-07 04:28:11] -rw-------. 1 boinc boinc       357 Oct  7 04:28 output.list
[2025-10-07 04:28:11] -rw-r--r--. 1 boinc boinc       620 Oct  7 04:28 runtime_log
[2025-10-07 04:28:11] -rw-------. 1 boinc boinc   2252800 Oct  7 04:28 result.tar.gz
[2025-10-07 04:28:11] -rw-r--r--. 1 boinc boinc      8703 Oct  7 04:28 runtime_log.err
[2025-10-07 04:28:11] -rw-------. 1 boinc boinc       656 Oct  7 04:28 ODrKDmLYKP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmexLNDmZxKBnm.diag
[2025-10-07 04:28:11] -rw-r--r--. 1 boinc boinc     20742 Oct  7 04:28 stderr.txt
[2025-10-07 04:28:11] HITS file was successfully produced:
[2025-10-07 04:28:11] -rw-------. 1 boinc boinc 183873900 Oct  7 04:26 shared/HITS.pool.root.1
[2025-10-07 04:28:11]  *** Contents of shared directory: ***
[2025-10-07 04:28:11] total 393656
[2025-10-07 04:28:11] -rw-r--r--. 2 boinc boinc 216384914 Oct  7 00:45 ATLAS.root_0
[2025-10-07 04:28:11] -rw-r--r--. 2 boinc boinc     15120 Oct  7 00:45 start_atlas.sh
[2025-10-07 04:28:11] -rw-r--r--. 2 boinc boinc    565604 Oct  7 00:45 input.tar.gz
[2025-10-07 04:28:11] -rw-------. 1 boinc boinc 183873900 Oct  7 04:26 HITS.pool.root.1
[2025-10-07 04:28:11] -rw-------. 1 boinc boinc   2252800 Oct  7 04:28 result.tar.gz
04:28:13 (3766): run_atlas exited; CPU time 50612.859815
04:28:13 (3766): called boinc_finish(0)

</stderr_txt>
]]>

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