Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:48:34 (22500): wrapper (7.7.26015): starting
22:48:34 (22500): wrapper: running run_atlas (--nthreads 8)
[2025-10-06 22:48:34] Arguments: --nthreads 8
[2025-10-06 22:48:34] Threads: 8
[2025-10-06 22:48:34] Checking for CVMFS
[2025-10-06 22:48:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-06 22:48:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-06 22:48:36] Running cvmfs_config stat atlas.cern.ch
[2025-10-06 22:48:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-06 22:48:37] 2.11.2.0 32446 99236 106740 151410 2 60 14489486 25165825 4632 130560 0 37751907 99.923 13799283 2526 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-06 22:48:37] CVMFS is ok
[2025-10-06 22:48:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-06 22:48:37] Checking for apptainer binary...
[2025-10-06 22:48:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-06 22:48:37] Running /usr/bin/apptainer --version
[2025-10-06 22:48:37] apptainer version 1.3.2-1.el7
[2025-10-06 22:48:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-06 22:49:08] cg-vwn269.simple-grid.lan
[2025-10-06 22:49:08] apptainer works
[2025-10-06 22:49:08] Set ATHENA_PROC_NUMBER=8
[2025-10-06 22:49:08] Set ATHENA_CORE_NUMBER=8
[2025-10-06 22:49:08] Starting ATLAS job with PandaID=6830135896
[2025-10-06 22:49:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-07 02:52:09]  *** The last 200 lines of the pilot log: ***
[2025-10-07 02:52:09] 2025-10-07 00:51:23,898 | INFO     | intersect: -6291642511.35455
[2025-10-07 02:52:09] 2025-10-07 00:51:23,898 | INFO     | chi2: 0.002726948426494749
[2025-10-07 02:52:09] 2025-10-07 00:51:23,898 | INFO     | current chi2=0.002726948426494749 (change=94.8143271555415 %)
[2025-10-07 02:52:09] 2025-10-07 00:51:23,899 | INFO     | sum of square deviations: 2750295288.0
[2025-10-07 02:52:09] 2025-10-07 00:51:23,900 | INFO     | sum of deviations: 8647289910.999998
[2025-10-07 02:52:09] 2025-10-07 00:51:23,901 | INFO     | mean x: 1759791873.0
[2025-10-07 02:52:09] 2025-10-07 00:51:23,901 | INFO     | mean y: 2485302.4830917874
[2025-10-07 02:52:09] 2025-10-07 00:51:23,901 | INFO     | -- intersect: -5530531670.366658
[2025-10-07 02:52:09] 2025-10-07 00:51:23,901 | INFO     | intersect: -5530531670.366658
[2025-10-07 02:52:09] 2025-10-07 00:51:23,901 | INFO     | chi2: 0.0013359312517902849
[2025-10-07 02:52:09] 2025-10-07 00:51:23,901 | INFO     | current chi2=0.0013359312517902849 (change=51.01002868955955 %)
[2025-10-07 02:52:09] 2025-10-07 00:51:23,902 | INFO     | sum of square deviations: 2555770710.5
[2025-10-07 02:52:09] 2025-10-07 00:51:23,903 | INFO     | sum of deviations: 7288922146.999999
[2025-10-07 02:52:09] 2025-10-07 00:51:23,903 | INFO     | mean x: 1759792025.5
[2025-10-07 02:52:09] 2025-10-07 00:51:23,904 | INFO     | mean y: 2486365.9702970297
[2025-10-07 02:52:09] 2025-10-07 00:51:23,904 | INFO     | -- intersect: -5016346902.633646
[2025-10-07 02:52:09] 2025-10-07 00:51:23,904 | INFO     | intersect: -5016346902.633646
[2025-10-07 02:52:09] 2025-10-07 00:51:23,904 | INFO     | chi2: 0.0008134196939350148
[2025-10-07 02:52:09] 2025-10-07 00:51:23,904 | INFO     | current chi2=0.0008134196939350148 (change=39.11215918895908 %)
[2025-10-07 02:52:09] 2025-10-07 00:51:23,905 | INFO     | sum of square deviations: 2370641658.0
[2025-10-07 02:52:09] 2025-10-07 00:51:23,906 | INFO     | sum of deviations: 6177034765.0
[2025-10-07 02:52:09] 2025-10-07 00:51:23,918 | INFO     | mean x: 1759792178.0
[2025-10-07 02:52:09] 2025-10-07 00:51:23,918 | INFO     | mean y: 2487281.4060913706
[2025-10-07 02:52:09] 2025-10-07 00:51:23,918 | INFO     | -- intersect: -4582894666.134572
[2025-10-07 02:52:09] 2025-10-07 00:51:23,918 | INFO     | intersect: -4582894666.134572
[2025-10-07 02:52:09] 2025-10-07 00:51:23,918 | INFO     | chi2: 0.000486989849782687
[2025-10-07 02:52:09] 2025-10-07 00:51:23,918 | INFO     | current chi2=0.000486989849782687 (change=40.13055579871499 %)
[2025-10-07 02:52:09] 2025-10-07 00:51:23,919 | INFO     | sum of square deviations: 2194675568.0
[2025-10-07 02:52:09] 2025-10-07 00:51:23,920 | INFO     | sum of deviations: 5364990748.0
[2025-10-07 02:52:09] 2025-10-07 00:51:23,920 | INFO     | mean x: 1759792330.5
[2025-10-07 02:52:09] 2025-10-07 00:51:23,920 | INFO     | mean y: 2487983.21875
[2025-10-07 02:52:09] 2025-10-07 00:51:23,921 | INFO     | -- intersect: -4299409622.602621
[2025-10-07 02:52:09] 2025-10-07 00:51:23,921 | INFO     | intersect: -4299409622.602621
[2025-10-07 02:52:09] 2025-10-07 00:51:23,921 | INFO     | chi2: 0.00033656478325478766
[2025-10-07 02:52:09] 2025-10-07 00:51:23,921 | INFO     | current chi2=0.00033656478325478766 (change=30.888747803475695 %)
[2025-10-07 02:52:09] 2025-10-07 00:51:23,921 | INFO     | sum of square deviations: 2027639878.0
[2025-10-07 02:52:09] 2025-10-07 00:51:23,923 | INFO     | sum of deviations: 4812546627.0
[2025-10-07 02:52:09] 2025-10-07 00:51:23,923 | INFO     | mean x: 1759792483.0
[2025-10-07 02:52:09] 2025-10-07 00:51:23,923 | INFO     | mean y: 2488487.4598930483
[2025-10-07 02:52:09] 2025-10-07 00:51:23,923 | INFO     | -- intersect: -4174329827.35607
[2025-10-07 02:52:09] 2025-10-07 00:51:23,923 | INFO     | intersect: -4174329827.35607
[2025-10-07 02:52:09] 2025-10-07 00:51:23,924 | INFO     | chi2: 0.00031453497556521454
[2025-10-07 02:52:09] 2025-10-07 00:51:23,924 | INFO     | current chi2=0.00031453497556521454 (change=6.545488056275936 %)
[2025-10-07 02:52:09] 2025-10-07 00:51:23,924 | INFO     | left removable region: 80
[2025-10-07 02:52:09] 2025-10-07 00:51:23,924 | INFO     | sum of square deviations: 869188390.0
[2025-10-07 02:52:09] 2025-10-07 00:51:23,925 | INFO     | sum of deviations: 1840042368.999999
[2025-10-07 02:52:09] 2025-10-07 00:51:23,925 | INFO     | mean x: 1759793520.0
[2025-10-07 02:52:09] 2025-10-07 00:51:23,925 | INFO     | mean y: 2491212.695035461
[2025-10-07 02:52:09] 2025-10-07 00:51:23,925 | INFO     | -- intersect: -3722932038.174258
[2025-10-07 02:52:09] 2025-10-07 00:51:23,926 | INFO     | intersect: -3722932038.174258
[2025-10-07 02:52:09] 2025-10-07 00:51:23,926 | INFO     | chi2: 0.00014535102084450985
[2025-10-07 02:52:09] 2025-10-07 00:51:23,926 | INFO     | -- intersect: -3722932038.174258
[2025-10-07 02:52:09] 2025-10-07 00:51:23,926 | INFO     | current memory leak: 2.12 B/s (using 141 data points, chi2=0.00)
[2025-10-07 02:52:09] 2025-10-07 00:51:23,927 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-10-07 02:52:09] 2025-10-07 00:51:23,927 | INFO     | ..............................
[2025-10-07 02:52:09] 2025-10-07 00:51:23,927 | INFO     | . Timing measurements:
[2025-10-07 02:52:09] 2025-10-07 00:51:23,927 | INFO     | . get job = 0 s
[2025-10-07 02:52:09] 2025-10-07 00:51:23,927 | INFO     | . initial setup = 13 s
[2025-10-07 02:52:09] 2025-10-07 00:51:23,927 | INFO     | . payload setup = 110 s
[2025-10-07 02:52:09] 2025-10-07 00:51:23,928 | INFO     | . stage-in = 0 s
[2025-10-07 02:52:09] 2025-10-07 00:51:23,928 | INFO     | . payload execution = 13981 s
[2025-10-07 02:52:09] 2025-10-07 00:51:23,928 | INFO     | . stage-out = 2 s
[2025-10-07 02:52:09] 2025-10-07 00:51:23,928 | INFO     | . log creation = 0 s
[2025-10-07 02:52:09] 2025-10-07 00:51:23,928 | INFO     | ..............................
[2025-10-07 02:52:09] 2025-10-07 00:51:24,481 | INFO     | 
[2025-10-07 02:52:09] 2025-10-07 00:51:24,482 | INFO     | job summary report
[2025-10-07 02:52:09] 2025-10-07 00:51:24,482 | INFO     | --------------------------------------------------
[2025-10-07 02:52:09] 2025-10-07 00:51:24,482 | INFO     | PanDA job id: 6830135896
[2025-10-07 02:52:09] 2025-10-07 00:51:24,482 | INFO     | task id: 46376905
[2025-10-07 02:52:09] 2025-10-07 00:51:24,482 | INFO     | errors: (none)
[2025-10-07 02:52:09] 2025-10-07 00:51:24,482 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-07 02:52:09] 2025-10-07 00:51:24,482 | INFO     | pilot state: finished 
[2025-10-07 02:52:09] 2025-10-07 00:51:24,482 | INFO     | transexitcode: 0
[2025-10-07 02:52:09] 2025-10-07 00:51:24,483 | INFO     | exeerrorcode: 0
[2025-10-07 02:52:09] 2025-10-07 00:51:24,483 | INFO     | exeerrordiag: 
[2025-10-07 02:52:09] 2025-10-07 00:51:24,483 | INFO     | exitcode: 0
[2025-10-07 02:52:09] 2025-10-07 00:51:24,483 | INFO     | exitmsg: OK
[2025-10-07 02:52:09] 2025-10-07 00:51:24,483 | INFO     | cpuconsumptiontime: 50020 s
[2025-10-07 02:52:09] 2025-10-07 00:51:24,483 | INFO     | nevents: 400
[2025-10-07 02:52:09] 2025-10-07 00:51:24,483 | INFO     | neventsw: 0
[2025-10-07 02:52:09] 2025-10-07 00:51:24,483 | INFO     | pid: 386
[2025-10-07 02:52:09] 2025-10-07 00:51:24,483 | INFO     | pgrp: 386
[2025-10-07 02:52:09] 2025-10-07 00:51:24,483 | INFO     | corecount: 8
[2025-10-07 02:52:09] 2025-10-07 00:51:24,483 | INFO     | event service: False
[2025-10-07 02:52:09] 2025-10-07 00:51:24,484 | INFO     | sizes: {0: 2347937, 1: 2348623, 2: 2348822, 13: 2348822, 24: 2348878, 34: 2348906, 45: 2349062, 56: 2349090, 67: 2349118, 77: 2349146, 85: 2349464, 88: 2349772, 14
[2025-10-07 02:52:09] 2025-10-07 00:51:24,484 | INFO     | --------------------------------------------------
[2025-10-07 02:52:09] 2025-10-07 00:51:24,484 | INFO     | 
[2025-10-07 02:52:09] 2025-10-07 00:51:24,484 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2025-10-07 02:52:09] 2025-10-07 00:51:24,751 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-07 02:52:09] 2025-10-07 00:51:24,751 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-07 02:52:09] 2025-10-07 00:51:24,752 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-07 02:52:09] 2025-10-07 00:51:24,752 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-07 02:52:09] 2025-10-07 00:51:24,752 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-07 02:52:09] 2025-10-07 00:51:24,752 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-07 02:52:09] 2025-10-07 00:51:24,752 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-07 02:52:09] 2025-10-07 00:51:24,752 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-07 02:52:09] 2025-10-07 00:51:24,752 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-07 02:52:09] 2025-10-07 00:51:24,752 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-07 02:52:09] 2025-10-07 00:51:24,752 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-07 02:52:09] 2025-10-07 00:51:24,752 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-07 02:52:09] 2025-10-07 00:51:24,753 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-07 02:52:09] 2025-10-07 00:51:24,753 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-07 02:52:09] 2025-10-07 00:51:24,753 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-07 02:52:09] 2025-10-07 00:51:24,753 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-07 02:52:09] 2025-10-07 00:51:24,753 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-07 02:52:09] 2025-10-07 00:51:24,753 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-07 02:52:09] 2025-10-07 00:51:24,753 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-07 02:52:09] 2025-10-07 00:51:24,756 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-07 02:52:09] 2025-10-07 00:51:24,756 | INFO     | job 6830135896 has completed (purged errors)
[2025-10-07 02:52:09] 2025-10-07 00:51:24,756 | INFO     | overall cleanup function is called
[2025-10-07 02:52:09] 2025-10-07 00:51:25,764 | INFO     | --- collectZombieJob: --- 10, [386]
[2025-10-07 02:52:09] 2025-10-07 00:51:25,765 | INFO     | zombie collector waiting for pid 386
[2025-10-07 02:52:09] 2025-10-07 00:51:25,765 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-07 02:52:09] 2025-10-07 00:51:25,765 | INFO     | collected zombie processes
[2025-10-07 02:52:09] 2025-10-07 00:51:25,765 | INFO     | will attempt to kill all subprocesses of pid=386
[2025-10-07 02:52:09] 2025-10-07 00:51:25,908 | INFO     | process IDs to be killed: [386] (in reverse order)
[2025-10-07 02:52:09] 2025-10-07 00:51:26,003 | WARNING  | found no corresponding commands to process id(s)
[2025-10-07 02:52:09] 2025-10-07 00:51:26,003 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-07 02:52:09] 2025-10-07 00:51:26,007 | INFO     | did not find any defunct processes belonging to 386
[2025-10-07 02:52:09] 2025-10-07 00:51:26,010 | INFO     | did not find any defunct processes belonging to 386
[2025-10-07 02:52:09] 2025-10-07 00:51:26,010 | INFO     | ready for new job
[2025-10-07 02:52:09] 2025-10-07 00:51:26,010 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-07 02:52:09] 2025-10-07 00:51:26,013 | INFO     | ***************************************
[2025-10-07 02:52:09] 2025-10-07 00:51:26,013 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-07 02:52:09] 2025-10-07 00:51:26,013 | INFO     | ***************************************
[2025-10-07 02:52:09] 2025-10-07 00:51:26,013 | INFO     | 
[2025-10-07 02:52:09] 2025-10-07 00:51:26,014 | INFO     | pilot is running in a VM
[2025-10-07 02:52:09] 2025-10-07 00:51:26,014 | INFO     | architecture information:
[2025-10-07 02:52:09] 2025-10-07 00:51:26,022 | INFO     | executing command: cat /etc/os-release
[2025-10-07 02:52:09] 2025-10-07 00:51:26,220 | INFO     | cat /etc/os-release:
[2025-10-07 02:52:09] NAME="CentOS Linux"
[2025-10-07 02:52:09] VERSION="7 (Core)"
[2025-10-07 02:52:09] ID="centos"
[2025-10-07 02:52:09] ID_LIKE="rhel fedora"
[2025-10-07 02:52:09] VERSION_ID="7"
[2025-10-07 02:52:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-07 02:52:09] ANSI_COLOR="0;31"
[2025-10-07 02:52:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-07 02:52:09] HOME_URL="https://www.centos.org/"
[2025-10-07 02:52:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-07 02:52:09] 
[2025-10-07 02:52:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-07 02:52:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-07 02:52:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-07 02:52:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-07 02:52:09] 
[2025-10-07 02:52:09] 2025-10-07 00:51:26,220 | INFO     | ***************************************
[2025-10-07 02:52:09] 2025-10-07 00:51:26,724 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2025-10-07 02:52:09] 2025-10-07 00:51:26,913 | INFO     | sufficient remaining disk space (494135148544 B)
[2025-10-07 02:52:09] 2025-10-07 00:51:26,913 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-07 02:52:09] 2025-10-07 00:51:26,914 | INFO     | current server update state: UPDATING_FINAL
[2025-10-07 02:52:09] 2025-10-07 00:51:26,914 | INFO     | update_server=False
[2025-10-07 02:52:09] 2025-10-07 00:51:26,914 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-07 02:52:09] 2025-10-07 00:51:26,914 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-07 02:52:09] 2025-10-07 00:51:26,914 | INFO     | aborting loop
[2025-10-07 02:52:09] 2025-10-07 00:51:27,683 | INFO     | all job control threads have been joined
[2025-10-07 02:52:09] 2025-10-07 00:51:27,751 | INFO     | all data control threads have been joined
[2025-10-07 02:52:09] 2025-10-07 00:51:27,919 | INFO     | [job] retrieve thread has finished
[2025-10-07 02:52:09] 2025-10-07 00:51:27,925 | INFO     | [job] job monitor thread has finished
[2025-10-07 02:52:09] 2025-10-07 00:51:28,106 | INFO     | [job] create_data_payload thread has finished
[2025-10-07 02:52:09] 2025-10-07 00:51:28,177 | INFO     | [payload] validate_post thread has finished
[2025-10-07 02:52:09] 2025-10-07 00:51:28,207 | INFO     | all payload control threads have been joined
[2025-10-07 02:52:09] 2025-10-07 00:51:28,312 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-07 02:52:09] 2025-10-07 00:51:28,429 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-07 02:52:09] 2025-10-07 00:51:28,439 | INFO     | [job] validate thread has finished
[2025-10-07 02:52:09] 2025-10-07 00:51:28,447 | INFO     | [payload] validate_pre thread has finished
[2025-10-07 02:52:09] 2025-10-07 00:51:28,690 | INFO     | [job] control thread has finished
[2025-10-07 02:52:09] 2025-10-07 00:51:28,758 | INFO     | [data] control thread has finished
[2025-10-07 02:52:09] 2025-10-07 00:51:28,993 | INFO     | [payload] execute_payloads thread has finished
[2025-10-07 02:52:09] 2025-10-07 00:51:29,037 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-07 02:52:09] 2025-10-07 00:51:29,095 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-07 02:52:09] 2025-10-07 00:51:29,213 | INFO     | [payload] control thread has finished
[2025-10-07 02:52:09] 2025-10-07 00:51:29,349 | INFO     | [data] copytool_in thread has finished
[2025-10-07 02:52:09] 2025-10-07 00:51:29,395 | INFO     | [payload] failed_post thread has finished
[2025-10-07 02:52:09] 2025-10-07 00:51:30,101 | INFO     | [job] queue monitor thread has finished
[2025-10-07 02:52:09] 2025-10-07 00:51:30,319 | INFO     | [data] copytool_out thread has finished
[2025-10-07 02:52:09] 2025-10-07 00:51:32,438 | INFO     | [data] queue_monitor thread has finished
[2025-10-07 02:52:09] 2025-10-07 00:51:56,912 | INFO     | PID=26283 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-07 02:52:09] 2025-10-07 00:51:56,912 | INFO     | .. there are 9 such processes running
[2025-10-07 02:52:09] 2025-10-07 00:51:56,912 | INFO     | found 0 job(s) in 20 queues
[2025-10-07 02:52:09] 2025-10-07 00:51:56,912 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-07 02:52:09] 2025-10-07 00:51:56,912 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-07 02:52:09] 2025-10-07 00:51:59,756 | INFO     | [monitor] cgroup control has ended
[2025-10-07 02:52:09] 2025-10-07 00:52:00,267 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140283403089728)>', '<ExcThread(monitor, started 140282817406720)>']
[2025-10-07 02:52:09] 2025-10-07 00:52:00,940 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-07 02:52:09] 2025-10-07 00:52:00,941 | INFO     | [monitor] control thread has ended
[2025-10-07 02:52:09] 2025-10-07 00:52:05,292 | INFO     | all workflow threads have been joined
[2025-10-07 02:52:09] 2025-10-07 00:52:05,293 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-07 02:52:09] 2025-10-07 00:52:05,293 | INFO     | traces error code: 0
[2025-10-07 02:52:09] 2025-10-07 00:52:05,293 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-07 02:52:09] 2025-10-07 00:52:05,627 [wrapper] ==== pilot stdout END ====
[2025-10-07 02:52:09] 2025-10-07 00:52:05,733 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-07 02:52:09] 2025-10-07 00:52:05,878 [wrapper] pilotpid: 26283
[2025-10-07 02:52:09] 2025-10-07 00:52:05,991 [wrapper] Pilot exit status: 0
[2025-10-07 02:52:09] 2025-10-07 00:52:06,306 [wrapper] pandaids: 6830135896
[2025-10-07 02:52:09] 2025-10-07 00:52:06,656 [wrapper] cleanup supervisor_pilot 24705 26284
[2025-10-07 02:52:09] 2025-10-07 00:52:06,779 [wrapper] Test setup, not cleaning
[2025-10-07 02:52:09] 2025-10-07 00:52:06,931 [wrapper] apfmon messages muted
[2025-10-07 02:52:09] 2025-10-07 00:52:07,061 [wrapper] ==== wrapper stdout END ====
[2025-10-07 02:52:09] 2025-10-07 00:52:07,226 [wrapper] ==== wrapper stderr END ====
[2025-10-07 02:52:09]  *** Error codes and diagnostics ***
[2025-10-07 02:52:09]     "exeErrorCode": 0,
[2025-10-07 02:52:09]     "exeErrorDiag": "",
[2025-10-07 02:52:09]     "pilotErrorCode": 0,
[2025-10-07 02:52:09]     "pilotErrorDiag": "",
[2025-10-07 02:52:09]  *** Listing of results directory ***
[2025-10-07 02:52:09] total 395292
[2025-10-07 02:52:09] -rw-r--r--. 1 boinc boinc    552446 Oct  4 21:05 pilot3.tar.gz
[2025-10-07 02:52:09] -rwx------. 1 boinc boinc     36292 Oct  4 21:08 runpilot2-wrapper.sh
[2025-10-07 02:52:09] -rw-r--r--. 1 boinc boinc      5112 Oct  4 21:08 queuedata.json
[2025-10-07 02:52:09] -rw-r--r--. 1 boinc boinc       100 Oct  6 22:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-07 02:52:09] -rwxr-xr-x. 1 boinc boinc      7986 Oct  6 22:48 run_atlas
[2025-10-07 02:52:09] -rw-r--r--. 1 boinc boinc       105 Oct  6 22:48 job.xml
[2025-10-07 02:52:09] -rw-r--r--. 1 boinc boinc      6390 Oct  6 22:48 init_data.xml
[2025-10-07 02:52:09] -rw-r--r--. 2 boinc boinc 215364187 Oct  6 22:48 EVNT.46376901._002383.pool.root.1
[2025-10-07 02:52:09] -rw-r--r--. 2 boinc boinc     15120 Oct  6 22:48 start_atlas.sh
[2025-10-07 02:52:09] drwxrwx--x. 2 boinc boinc        68 Oct  6 22:48 shared
[2025-10-07 02:52:09] -rw-r--r--. 2 boinc boinc    565599 Oct  6 22:48 input.tar.gz
[2025-10-07 02:52:09] -rw-r--r--. 1 boinc boinc         0 Oct  6 22:48 boinc_lockfile
[2025-10-07 02:52:09] -rw-r--r--. 1 boinc boinc      2518 Oct  6 22:49 pandaJob.out
[2025-10-07 02:52:09] -rw-------. 1 boinc boinc    975026 Oct  6 22:52 agis_schedconf.cvmfs.json
[2025-10-07 02:52:09] drwx------. 4 boinc boinc      4096 Oct  6 22:52 pilot3
[2025-10-07 02:52:09] -rw-------. 1 boinc boinc 180782290 Oct  7 02:49 HITS.46376905._065805.pool.root.1
[2025-10-07 02:52:09] -rw-r--r--. 1 boinc boinc       531 Oct  7 02:49 boinc_task_state.xml
[2025-10-07 02:52:09] -rw-------. 1 boinc boinc      1017 Oct  7 02:50 memory_monitor_summary.json
[2025-10-07 02:52:09] -rw-------. 1 boinc boinc   1560401 Oct  7 02:50 agis_ddmendpoints.agis.ALL.json
[2025-10-07 02:52:09] -rw-------. 1 boinc boinc    459329 Oct  7 02:50 log.46376905._065805.job.log.tgz.1
[2025-10-07 02:52:09] -rw-------. 1 boinc boinc        95 Oct  7 02:50 pilot_heartbeat.json
[2025-10-07 02:52:09] -rw-------. 1 boinc boinc      7785 Oct  7 02:51 heartbeat.json
[2025-10-07 02:52:09] -rw-r--r--. 1 boinc boinc      8192 Oct  7 02:51 boinc_mmap_file
[2025-10-07 02:52:09] -rw-r--r--. 1 boinc boinc        28 Oct  7 02:51 wrapper_checkpoint.txt
[2025-10-07 02:52:09] -rw-------. 1 boinc boinc      4885 Oct  7 02:52 pilotlog.txt
[2025-10-07 02:52:09] -rw-------. 1 boinc boinc   1918553 Oct  7 02:52 log.46376905._065805.job.log.1
[2025-10-07 02:52:09] -rw-------. 1 boinc boinc       357 Oct  7 02:52 output.list
[2025-10-07 02:52:09] -rw-r--r--. 1 boinc boinc       620 Oct  7 02:52 runtime_log
[2025-10-07 02:52:09] -rw-------. 1 boinc boinc   2396160 Oct  7 02:52 result.tar.gz
[2025-10-07 02:52:09] -rw-r--r--. 1 boinc boinc      8717 Oct  7 02:52 runtime_log.err
[2025-10-07 02:52:09] -rw-------. 1 boinc boinc       657 Oct  7 02:52 e9jMDmMnMP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmkKMNDmXA9nbn.diag
[2025-10-07 02:52:09] -rw-r--r--. 1 boinc boinc     20661 Oct  7 02:52 stderr.txt
[2025-10-07 02:52:09] HITS file was successfully produced:
[2025-10-07 02:52:09] -rw-------. 1 boinc boinc 180782290 Oct  7 02:49 shared/HITS.pool.root.1
[2025-10-07 02:52:09]  *** Contents of shared directory: ***
[2025-10-07 02:52:09] total 389780
[2025-10-07 02:52:09] -rw-r--r--. 2 boinc boinc 215364187 Oct  6 22:48 ATLAS.root_0
[2025-10-07 02:52:09] -rw-r--r--. 2 boinc boinc     15120 Oct  6 22:48 start_atlas.sh
[2025-10-07 02:52:09] -rw-r--r--. 2 boinc boinc    565599 Oct  6 22:48 input.tar.gz
[2025-10-07 02:52:09] -rw-------. 1 boinc boinc 180782290 Oct  7 02:49 HITS.pool.root.1
[2025-10-07 02:52:09] -rw-------. 1 boinc boinc   2396160 Oct  7 02:52 result.tar.gz
02:52:10 (22500): run_atlas exited; CPU time 50215.363725
02:52:10 (22500): called boinc_finish(0)

</stderr_txt>
]]>

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