Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-09 21:04:07 (936): vboxwrapper version 26210
2025-10-09 21:04:07 (936): BOINC client version: 8.2.4
2025-10-09 21:04:08 (936): Detected: VirtualBox VboxManage Interface (Version: 6.1.34)
2025-10-09 21:04:09 (936): Successfully copied 'init_data.xml' to the shared directory.
2025-10-09 21:04:09 (936): Create VM. (boinc_62da83e32e883566, slot#5)
2025-10-09 21:04:09 (936): Setting Memory Size for VM. (4400MB)
2025-10-09 21:04:10 (936): Setting CPU Count for VM. (4)
2025-10-09 21:04:10 (936): Setting Chipset Options for VM.
2025-10-09 21:04:10 (936): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-09 21:04:10 (936): Setting Boot Options for VM.
2025-10-09 21:04:11 (936): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-09 21:04:11 (936): Enabling VM Network Access.
2025-10-09 21:04:11 (936): Disabling USB Support for VM.
2025-10-09 21:04:12 (936): Disabling COM Port Support for VM.
2025-10-09 21:04:12 (936): Disabling LPT Port Support for VM.
2025-10-09 21:04:12 (936): Disabling Audio Support for VM.
2025-10-09 21:04:13 (936): Disabling Clipboard Support for VM.
2025-10-09 21:04:13 (936): Disabling Drag and Drop Support for VM.
2025-10-09 21:04:13 (936): Adding storage controller(s) to VM.
2025-10-09 21:04:13 (936): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-09 21:04:14 (936): Adding VirtualBox Guest Additions to VM.
2025-10-09 21:04:15 (936): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-09 21:04:15 (936): forwarding host port 52853 to guest port 80
2025-10-09 21:04:15 (936): Enabling remote desktop for VM.
2025-10-09 21:04:15 (936): Required extension pack not installed, remote desktop not enabled.
2025-10-09 21:04:15 (936): Enabling shared directory for VM.
2025-10-09 21:04:16 (936): Starting VM using VBoxManage interface. (boinc_62da83e32e883566, slot#5)
2025-10-09 21:04:21 (936): Successfully started VM. (PID = '11048')
2025-10-09 21:04:21 (936): Reporting VM Process ID to BOINC.
2025-10-09 21:04:21 (936): Guest Log: BIOS: VirtualBox 6.1.34
2025-10-09 21:04:21 (936): Guest Log: CPUID EDX: 0x178bfbff
2025-10-09 21:04:21 (936): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-09 21:04:21 (936): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-09 21:04:21 (936): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-09 21:04:21 (936): Detected: Web Application Enabled (http://localhost:52853)
2025-10-09 21:04:21 (936): Preference change detected
2025-10-09 21:04:21 (936): Setting CPU throttle for VM. (100%)
2025-10-09 21:04:22 (936): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-09 21:04:23 (936): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-09 21:04:23 (936): Guest Log: BIOS: Booting from Hard Disk...
2025-10-09 21:04:26 (936): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-09 21:04:26 (936): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-09 21:04:26 (936): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-09 21:04:26 (936): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-09 21:04:26 (936): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-09 21:04:26 (936): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-09 21:04:26 (936): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-09 21:04:26 (936): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-09 21:04:26 (936): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-09 21:04:26 (936): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-09 21:04:26 (936): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-09 21:04:26 (936): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-09 21:04:26 (936): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-09 21:04:26 (936): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-09 21:04:26 (936): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-09 21:04:26 (936): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-09 21:04:26 (936): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-09 21:04:26 (936): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-09 21:04:27 (936): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-09 21:04:27 (936): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-09 21:04:27 (936): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-09 21:04:27 (936): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-09 21:04:27 (936): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-09 21:04:27 (936): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-09 21:04:27 (936): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-09 21:04:27 (936): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-09 21:04:27 (936): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-09 21:04:27 (936): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-09 21:04:27 (936): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-09 21:04:27 (936): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-09 21:04:27 (936): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-09 21:04:27 (936): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-09 21:04:35 (936): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-09 21:04:35 (936): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-10-09 21:04:45 (936): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-09 21:04:45 (936): Guest Log: 00:00:00.000256 main     Log opened 2025-10-09T21:04:42.857072000Z
2025-10-09 21:04:45 (936): Guest Log: 00:00:00.000404 main     OS Product: Linux
2025-10-09 21:04:45 (936): Guest Log: 00:00:00.000457 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-09 21:04:45 (936): Guest Log: 00:00:00.000504 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-09 21:04:45 (936): Guest Log: 00:00:00.000551 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-09 21:04:45 (936): Guest Log: 00:00:00.000553 main     Process ID: 1306
2025-10-09 21:04:45 (936): Guest Log: 00:00:00.000554 main     Package type: LINUX_64BITS_GENERIC
2025-10-09 21:04:45 (936): Guest Log: 00:00:00.002428 main     5.2.32 r132073 started. Verbose level = 0
2025-10-09 21:04:46 (936): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-09 21:04:46 (936): Guest Log: [INFO] Mounting shared directory
2025-10-09 21:04:46 (936): Guest Log: [INFO] Checking for init_data.xml
2025-10-09 21:04:51 (936): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-09 21:04:51 (936): Guest Log: [INFO] Detected branch: prod
2025-10-09 21:04:52 (936): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-09 21:04:52 (936): Guest Log: Copying input files
2025-10-09 21:04:53 (936): Guest Log: Copied input files into RunAtlas.
2025-10-09 21:04:53 (936): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-09 21:04:53 (936): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-09 21:04:53 (936): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-09 21:04:53 (936): Guest Log: Further information can be found at the LHC@home message board.
2025-10-09 21:04:55 (936): Guest Log: 00:00:10.010130 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 187 856 412 000ns (GuestNow=1 760 036 695 005 734 000 ns GuestLast=1 760 043 882 862 146 000 ns fSetTimeLastLoop=true )
2025-10-09 21:05:02 (936): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-09 21:05:03 (936): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-09 21:05:03 (936): Guest Log: 2.6.3.0 1583 0 30140 151520 3 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-09 21:05:04 (936): Guest Log: copied the webapp to /var/www
2025-10-09 21:05:04 (936): Guest Log: ATHENA_PROC_NUMBER=4
2025-10-09 21:05:04 (936): Guest Log: ATHENA_CORE_NUMBER=4
2025-10-09 21:05:04 (936): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-09 21:05:04 (936): Guest Log:  *** Starting ATLAS job. (PandaID=6830135307 taskID=46376905) ***
2025-10-09 22:47:42 (936): Status Report: Elapsed Time: '6000.740364'
2025-10-09 22:47:44 (936): Status Report: CPU Time: '22460.640625'
2025-10-10 00:34:14 (936): Status Report: Elapsed Time: '12001.266003'
2025-10-10 00:34:14 (936): Status Report: CPU Time: '47913.343750'
2025-10-10 02:20:38 (936): Status Report: Elapsed Time: '18005.856550'
2025-10-10 02:20:38 (936): Status Report: CPU Time: '73027.250000'
2025-10-10 02:46:18 (936): Guest Log:  *** Job finished ***
2025-10-10 02:46:18 (936): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-10 02:46:18 (936): Guest Log: 2025-10-10 00:46:10,068 | INFO     | PID=5975 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-10-10 02:46:18 (936): Guest Log: 2025-10-10 00:46:10,069 | INFO     | found 0 job(s) in 20 queues
2025-10-10 02:46:18 (936): Guest Log: 2025-10-10 00:46:10,070 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-10 02:46:18 (936): Guest Log: 2025-10-10 00:46:10,070 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-10 02:46:18 (936): Guest Log: 2025-10-10 00:46:10,070 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-10 02:46:18 (936): Guest Log: 2025-10-10 00:46:10,070 | INFO     | [monitor] control thread has ended
2025-10-10 02:46:18 (936): Guest Log: 2025-10-10 00:46:13,632 | INFO     | all workflow threads have been joined
2025-10-10 02:46:18 (936): Guest Log: 2025-10-10 00:46:13,632 | INFO     | end of generic workflow (traces error code: 0)
2025-10-10 02:46:18 (936): Guest Log: 2025-10-10 00:46:13,632 | INFO     | traces error code: 0
2025-10-10 02:46:18 (936): Guest Log: 2025-10-10 00:46:13,633 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-10 02:46:18 (936): Guest Log: 2025-10-10 00:46:13,769 [wrapper] ==== pilot stdout END ====
2025-10-10 02:46:18 (936): Guest Log: 2025-10-10 00:46:13,777 [wrapper] ==== wrapper stdout RESUME ====
2025-10-10 02:46:18 (936): Guest Log: 2025-10-10 00:46:13,785 [wrapper] pilotpid: 5975
2025-10-10 02:46:18 (936): Guest Log: 2025-10-10 00:46:13,793 [wrapper] Pilot exit status: 0
2025-10-10 02:46:18 (936): Guest Log: 2025-10-10 00:46:13,840 [wrapper] pandaids: 6830135307
2025-10-10 02:46:18 (936): Guest Log: 2025-10-10 00:46:13,895 [wrapper] cleanup supervisor_pilot 21757 5976
2025-10-10 02:46:18 (936): Guest Log: 2025-10-10 00:46:13,909 [wrapper] Test setup, not cleaning
2025-10-10 02:46:18 (936): Guest Log: 2025-10-10 00:46:13,917 [wrapper] apfmon messages muted
2025-10-10 02:46:18 (936): Guest Log: 2025-10-10 00:46:13,925 [wrapper] ==== wrapper stdout END ====
2025-10-10 02:46:18 (936): Guest Log: 2025-10-10 00:46:13,933 [wrapper] ==== wrapper stderr END ====
2025-10-10 02:46:18 (936): Guest Log:  *** Error codes and diagnostics ***
2025-10-10 02:46:18 (936): Guest Log:     "exeErrorCode": 0,
2025-10-10 02:46:18 (936): Guest Log:     "exeErrorDiag": "",
2025-10-10 02:46:18 (936): Guest Log:     "pilotErrorCode": 0,
2025-10-10 02:46:18 (936): Guest Log:     "pilotErrorDiag": "",
2025-10-10 02:46:18 (936): Guest Log:  *** Listing of results directory ***
2025-10-10 02:46:18 (936): Guest Log: total 186260
2025-10-10 02:46:18 (936): Guest Log: -rw-r--r--. 1 atlas atlas    552446 Oct  4 18:53 pilot3.tar.gz
2025-10-10 02:46:18 (936): Guest Log: -rwx------. 1 atlas atlas     36292 Oct  4 18:54 runpilot2-wrapper.sh
2025-10-10 02:46:18 (936): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct  4 18:54 queuedata.json
2025-10-10 02:46:18 (936): Guest Log: -rwxr-xr-x. 1 atlas atlas      8807 Oct  9 19:04 init_data.xml
2025-10-10 02:46:18 (936): Guest Log: -rwxr-xr-x. 1 atlas atlas    565592 Oct  9 19:04 input.tar.gz
2025-10-10 02:46:18 (936): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct  9 19:04 start_atlas.sh
2025-10-10 02:46:18 (936): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct  9 19:04 EVNT.46376901._002375.pool.root.1 -> /data/./ATLAS.root_0
2025-10-10 02:46:18 (936): Guest Log: -rw-r--r--. 1 atlas atlas      2519 Oct  9 19:05 pandaJob.out
2025-10-10 02:46:18 (936): Guest Log: -rw-------. 1 atlas atlas    975446 Oct  9 19:05 agis_schedconf.cvmfs.json
2025-10-10 02:46:18 (936): Guest Log: drwx------. 4 atlas atlas      4096 Oct  9 19:05 pilot3
2025-10-10 02:46:18 (936): Guest Log: -rw-------. 1 atlas atlas 180636358 Oct 10 00:44 HITS.46376905._065602.pool.root.1
2025-10-10 02:46:18 (936): Guest Log: -rw-------. 1 atlas atlas      1027 Oct 10 00:45 memory_monitor_summary.json
2025-10-10 02:46:18 (936): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 10 00:45 agis_ddmendpoints.agis.ALL.json
2025-10-10 02:46:18 (936): Guest Log: -rw-------. 1 atlas atlas    472179 Oct 10 00:45 log.46376905._065602.job.log.tgz.1
2025-10-10 02:46:18 (936): Guest Log: -rw-------. 1 atlas atlas      7812 Oct 10 00:45 heartbeat.json
2025-10-10 02:46:18 (936): Guest Log: -rw-------. 1 atlas atlas        95 Oct 10 00:46 pilot_heartbeat.json
2025-10-10 02:46:18 (936): Guest Log: -rw-------. 1 atlas atlas      4877 Oct 10 00:46 pilotlog.txt
2025-10-10 02:46:18 (936): Guest Log: -rw-------. 1 atlas atlas   2662798 Oct 10 00:46 log.46376905._065602.job.log.1
2025-10-10 02:46:18 (936): Guest Log: -rw-------. 1 atlas atlas       357 Oct 10 00:46 output.list
2025-10-10 02:46:18 (936): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 10 00:46 runtime_log
2025-10-10 02:46:18 (936): Guest Log: -rw-------. 1 atlas atlas   3153920 Oct 10 00:46 result.tar.gz
2025-10-10 02:46:18 (936): Guest Log: -rw-r--r--. 1 atlas atlas      8661 Oct 10 00:46 runtime_log.err
2025-10-10 02:46:18 (936): Guest Log: -rw-------. 1 atlas atlas       665 Oct 10 00:46 B0mLDmxZMP8n9Rq4apOajLDm4fhM0noT9bVof3QYDmnCEMDmrFqNZn.diag
2025-10-10 02:46:18 (936): Guest Log: Looking for outputfile HITS.46376905._065602.pool.root.1
2025-10-10 02:46:18 (936): Guest Log: HITS file was successfully produced
2025-10-10 02:46:18 (936): Guest Log: -rw-------. 1 atlas atlas 180636358 Oct 10 00:44 /home/atlas/RunAtlas/HITS.46376905._065602.pool.root.1
2025-10-10 02:46:19 (936): Guest Log: Successfully finished the ATLAS job!
2025-10-10 02:46:19 (936): Guest Log: Copying the results back to the shared directory!
2025-10-10 02:46:19 (936): Guest Log:  *** Contents of shared directory: ***
2025-10-10 02:46:19 (936): Guest Log: total 388660
2025-10-10 02:46:19 (936): Guest Log: -rwxrwxrwx. 1 root root 213597104 Oct  9 19:04 ATLAS.root_0
2025-10-10 02:46:19 (936): Guest Log: -rwxrwxrwx. 1 root root 180636358 Oct 10 00:46 HITS.pool.root.1
2025-10-10 02:46:19 (936): Guest Log: -rwxrwxrwx. 1 root root      8807 Oct  9 19:04 init_data.xml
2025-10-10 02:46:19 (936): Guest Log: -rwxrwxrwx. 1 root root    565592 Oct  4 22:45 input.tar.gz
2025-10-10 02:46:19 (936): Guest Log: -rwxrwxrwx. 1 root root   3153920 Oct 10 00:46 result.tar.gz
2025-10-10 02:46:19 (936): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct  4 22:45 start_atlas.sh
2025-10-10 02:46:19 (936): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-10 02:46:19 (936): VM Completion File Detected.
2025-10-10 02:46:19 (936): Powering off VM.
2025-10-10 02:46:21 (936): Successfully stopped VM.
2025-10-10 02:46:21 (936): Deregistering VM. (boinc_62da83e32e883566, slot#5)
2025-10-10 02:46:21 (936): Removing network bandwidth throttle group from VM.
2025-10-10 02:46:21 (936): Removing VM from VirtualBox.
2025-10-10 02:46:27 (936): called boinc_finish(0)

</stderr_txt>
]]>

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