Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-05 00:19:40 (3316155): vboxwrapper version 26210
2025-10-05 00:19:40 (3316155): BOINC client version: 8.0.4
2025-10-05 00:19:40 (3316155): Detected: VirtualBox VboxManage Interface (Version: 7.2.2)
2025-10-05 00:19:40 (3316155): Successfully copied 'init_data.xml' to the shared directory.
2025-10-05 00:19:40 (3316155): Create VM. (boinc_e86d9ad42e4e21f6, slot#1)
2025-10-05 00:19:40 (3316155): Setting Memory Size for VM. (4200MB)
2025-10-05 00:19:41 (3316155): Setting CPU Count for VM. (2)
2025-10-05 00:19:41 (3316155): Setting Chipset Options for VM.
2025-10-05 00:19:41 (3316155): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-05 00:19:41 (3316155): Setting Boot Options for VM.
2025-10-05 00:19:41 (3316155): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-05 00:19:41 (3316155): Enabling VM Network Access.
2025-10-05 00:19:41 (3316155): Disabling USB Support for VM.
2025-10-05 00:19:41 (3316155): Disabling COM Port Support for VM.
2025-10-05 00:19:41 (3316155): Disabling LPT Port Support for VM.
2025-10-05 00:19:42 (3316155): Disabling Audio Support for VM.
2025-10-05 00:19:42 (3316155): Disabling Clipboard Support for VM.
2025-10-05 00:19:42 (3316155): Disabling Drag and Drop Support for VM.
2025-10-05 00:19:42 (3316155): Adding storage controller(s) to VM.
2025-10-05 00:19:42 (3316155): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-05 00:19:43 (3316155): Adding VirtualBox Guest Additions to VM.
2025-10-05 00:19:43 (3316155): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-05 00:19:43 (3316155): forwarding host port 44353 to guest port 80
2025-10-05 00:19:43 (3316155): Enabling remote desktop for VM.
2025-10-05 00:19:43 (3316155): Required extension pack not installed, remote desktop not enabled.
2025-10-05 00:19:43 (3316155): Enabling shared directory for VM.
2025-10-05 00:19:43 (3316155): Starting VM using VBoxManage interface. (boinc_e86d9ad42e4e21f6, slot#1)
2025-10-05 00:19:45 (3316155): Successfully started VM. (PID = '3316771')
2025-10-05 00:19:45 (3316155): Reporting VM Process ID to BOINC.
2025-10-05 00:19:45 (3316155): Guest Log: BIOS: VirtualBox 7.2.2
2025-10-05 00:19:45 (3316155): Guest Log: CPUID EDX: 0x178bfbff
2025-10-05 00:19:45 (3316155): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-05 00:19:45 (3316155): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-05 00:19:45 (3316155): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-05 00:19:45 (3316155): Detected: Web Application Enabled (http://localhost:44353)
2025-10-05 00:19:45 (3316155): Preference change detected
2025-10-05 00:19:45 (3316155): Setting CPU throttle for VM. (50%)
2025-10-05 00:19:45 (3316155): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-05 00:19:47 (3316155): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-05 00:19:47 (3316155): Guest Log: BIOS: Booting from Hard Disk...
2025-10-05 00:19:52 (3316155): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-05 00:19:52 (3316155): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-05 00:19:52 (3316155): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-05 00:19:52 (3316155): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-05 00:19:52 (3316155): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-05 00:19:52 (3316155): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-05 00:19:52 (3316155): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-05 00:19:52 (3316155): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-05 00:19:52 (3316155): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-05 00:19:52 (3316155): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-05 00:19:52 (3316155): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-05 00:19:52 (3316155): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-05 00:19:52 (3316155): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-05 00:19:52 (3316155): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-05 00:19:52 (3316155): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-05 00:19:52 (3316155): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-05 00:19:52 (3316155): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-05 00:19:52 (3316155): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-05 00:19:52 (3316155): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-05 00:19:52 (3316155): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-05 00:19:52 (3316155): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-05 00:19:52 (3316155): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-05 00:19:52 (3316155): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-05 00:19:52 (3316155): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-05 00:19:52 (3316155): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-05 00:19:52 (3316155): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-05 00:19:52 (3316155): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-05 00:19:52 (3316155): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-05 00:19:52 (3316155): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-05 00:19:52 (3316155): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-05 00:19:52 (3316155): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-05 00:19:52 (3316155): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-05 00:20:02 (3316155): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-05 00:20:02 (3316155): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-05 00:20:25 (3316155): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-05 00:20:25 (3316155): Guest Log: 00:00:00.000574 main     Log opened 2025-10-04T22:20:23.600610000Z
2025-10-05 00:20:25 (3316155): Guest Log: 00:00:00.000809 main     OS Product: Linux
2025-10-05 00:20:25 (3316155): Guest Log: 00:00:00.000889 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-05 00:20:25 (3316155): Guest Log: 00:00:00.000957 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-05 00:20:25 (3316155): Guest Log: 00:00:00.001025 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-05 00:20:25 (3316155): Guest Log: 00:00:00.001027 main     Process ID: 1268
2025-10-05 00:20:25 (3316155): Guest Log: 00:00:00.001028 main     Package type: LINUX_64BITS_GENERIC
2025-10-05 00:20:25 (3316155): Guest Log: 00:00:00.004242 main     5.2.32 r132073 started. Verbose level = 0
2025-10-05 00:20:25 (3316155): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-05 00:20:25 (3316155): Guest Log: [INFO] Mounting shared directory
2025-10-05 00:20:25 (3316155): Guest Log: [INFO] Checking for init_data.xml
2025-10-05 00:20:54 (3316155): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-05 00:20:54 (3316155): Guest Log: [INFO] Detected branch: prod
2025-10-05 00:20:54 (3316155): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-05 00:20:54 (3316155): Guest Log: Copying input files
2025-10-05 00:20:57 (3316155): Guest Log: Copied input files into RunAtlas.
2025-10-05 00:20:57 (3316155): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-05 00:20:57 (3316155): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-05 00:20:57 (3316155): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-05 00:20:57 (3316155): Guest Log: Further information can be found at the LHC@home message board.
2025-10-05 00:21:07 (3316155): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-05 00:21:08 (3316155): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-05 00:21:08 (3316155): Guest Log: 2.6.3.0 1547 0 32188 151343 3 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-05 00:21:09 (3316155): Guest Log: copied the webapp to /var/www
2025-10-05 00:21:09 (3316155): Guest Log: ATHENA_PROC_NUMBER=2
2025-10-05 00:21:09 (3316155): Guest Log: ATHENA_CORE_NUMBER=2
2025-10-05 00:21:09 (3316155): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-05 00:21:09 (3316155): Guest Log:  *** Starting ATLAS job. (PandaID=6830320405 taskID=46373048) ***
2025-10-05 01:58:45 (3316155): Status Report: Elapsed Time: '6000.000000'
2025-10-05 01:58:45 (3316155): Status Report: CPU Time: '5541.830000'
2025-10-05 03:37:46 (3316155): Status Report: Elapsed Time: '12000.000000'
2025-10-05 03:37:46 (3316155): Status Report: CPU Time: '11575.340000'
2025-10-05 05:16:46 (3316155): Status Report: Elapsed Time: '18000.000000'
2025-10-05 05:16:46 (3316155): Status Report: CPU Time: '17606.220000'
2025-10-05 06:55:47 (3316155): Status Report: Elapsed Time: '24000.000000'
2025-10-05 06:55:47 (3316155): Status Report: CPU Time: '23638.090000'
2025-10-05 08:34:48 (3316155): Status Report: Elapsed Time: '30000.000000'
2025-10-05 08:34:48 (3316155): Status Report: CPU Time: '29662.340000'
2025-10-05 10:13:48 (3316155): Status Report: Elapsed Time: '36000.000000'
2025-10-05 10:13:48 (3316155): Status Report: CPU Time: '35691.010000'
2025-10-05 11:52:49 (3316155): Status Report: Elapsed Time: '42000.000000'
2025-10-05 11:52:49 (3316155): Status Report: CPU Time: '41712.300000'
2025-10-05 13:31:50 (3316155): Status Report: Elapsed Time: '48000.000000'
2025-10-05 13:31:50 (3316155): Status Report: CPU Time: '47685.670000'
2025-10-05 15:10:50 (3316155): Status Report: Elapsed Time: '54000.000000'
2025-10-05 15:10:50 (3316155): Status Report: CPU Time: '53709.380000'
2025-10-05 16:49:51 (3316155): Status Report: Elapsed Time: '60000.000000'
2025-10-05 16:49:51 (3316155): Status Report: CPU Time: '59726.150000'
2025-10-05 18:28:51 (3316155): Status Report: Elapsed Time: '66000.000000'
2025-10-05 18:28:51 (3316155): Status Report: CPU Time: '65741.580000'
2025-10-05 20:07:52 (3316155): Status Report: Elapsed Time: '72000.000000'
2025-10-05 20:07:52 (3316155): Status Report: CPU Time: '69696.850000'
2025-10-05 21:08:48 (3316155): Guest Log:  *** Job finished ***
2025-10-05 21:08:48 (3316155): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-05 21:08:48 (3316155): Guest Log: 2025-10-05 19:08:23,413 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-05 21:08:48 (3316155): Guest Log: 2025-10-05 19:08:23,413 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-05 21:08:48 (3316155): Guest Log: 2025-10-05 19:08:39,531 | INFO     | [monitor] cgroup control has ended
2025-10-05 21:08:48 (3316155): Guest Log: 2025-10-05 19:08:41,100 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140391350794048)>', '<ExcThread(monitor, started 140390921393920)>']
2025-10-05 21:08:48 (3316155): Guest Log: 2025-10-05 19:08:41,733 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-05 21:08:48 (3316155): Guest Log: 2025-10-05 19:08:41,735 | INFO     | [monitor] control thread has ended
2025-10-05 21:08:48 (3316155): Guest Log: 2025-10-05 19:08:46,106 | INFO     | all workflow threads have been joined
2025-10-05 21:08:48 (3316155): Guest Log: 2025-10-05 19:08:46,107 | INFO     | end of generic workflow (traces error code: 0)
2025-10-05 21:08:48 (3316155): Guest Log: 2025-10-05 19:08:46,108 | INFO     | traces error code: 0
2025-10-05 21:08:48 (3316155): Guest Log: 2025-10-05 19:08:46,109 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-05 21:08:48 (3316155): Guest Log: 2025-10-05 19:08:46,391 [wrapper] ==== pilot stdout END ====
2025-10-05 21:08:48 (3316155): Guest Log: 2025-10-05 19:08:46,400 [wrapper] ==== wrapper stdout RESUME ====
2025-10-05 21:08:48 (3316155): Guest Log: 2025-10-05 19:08:46,408 [wrapper] pilotpid: 5913
2025-10-05 21:08:48 (3316155): Guest Log: 2025-10-05 19:08:46,455 [wrapper] Pilot exit status: 0
2025-10-05 21:08:48 (3316155): Guest Log: 2025-10-05 19:08:46,519 [wrapper] pandaids: 6830320405
2025-10-05 21:08:48 (3316155): Guest Log: 2025-10-05 19:08:46,596 [wrapper] cleanup supervisor_pilot 15375 5914
2025-10-05 21:08:48 (3316155): Guest Log: 2025-10-05 19:08:46,606 [wrapper] Test setup, not cleaning
2025-10-05 21:08:48 (3316155): Guest Log: 2025-10-05 19:08:46,614 [wrapper] apfmon messages muted
2025-10-05 21:08:48 (3316155): Guest Log: 2025-10-05 19:08:46,661 [wrapper] ==== wrapper stdout END ====
2025-10-05 21:08:48 (3316155): Guest Log: 2025-10-05 19:08:46,669 [wrapper] ==== wrapper stderr END ====
2025-10-05 21:08:48 (3316155): Guest Log:  *** Error codes and diagnostics ***
2025-10-05 21:08:48 (3316155): Guest Log:     "exeErrorCode": 0,
2025-10-05 21:08:48 (3316155): Guest Log:     "exeErrorDiag": "",
2025-10-05 21:08:48 (3316155): Guest Log:     "pilotErrorCode": 0,
2025-10-05 21:08:48 (3316155): Guest Log:     "pilotErrorDiag": "",
2025-10-05 21:08:48 (3316155): Guest Log:  *** Listing of results directory ***
2025-10-05 21:08:48 (3316155): Guest Log: total 212900
2025-10-05 21:08:48 (3316155): Guest Log: -rw-r--r--. 1 atlas atlas    552446 Oct  4 20:32 pilot3.tar.gz
2025-10-05 21:08:48 (3316155): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct  4 20:41 queuedata.json
2025-10-05 21:08:48 (3316155): Guest Log: -rwx------. 1 atlas atlas     36292 Oct  4 20:41 runpilot2-wrapper.sh
2025-10-05 21:08:48 (3316155): Guest Log: -rw-r--r--. 1 atlas atlas    565607 Oct  4 22:20 input.tar.gz
2025-10-05 21:08:48 (3316155): Guest Log: -rw-r--r--. 1 atlas atlas     15120 Oct  4 22:20 start_atlas.sh
2025-10-05 21:08:48 (3316155): Guest Log: -rw-r--r--. 1 atlas atlas      6860 Oct  4 22:20 init_data.xml
2025-10-05 21:08:48 (3316155): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct  4 22:20 EVNT.46373045._001986.pool.root.1 -> /data/./ATLAS.root_0
2025-10-05 21:08:48 (3316155): Guest Log: -rw-r--r--. 1 atlas atlas      2537 Oct  4 22:21 pandaJob.out
2025-10-05 21:08:48 (3316155): Guest Log: -rw-------. 1 atlas atlas    973982 Oct  4 22:21 agis_schedconf.cvmfs.json
2025-10-05 21:08:48 (3316155): Guest Log: drwx------. 4 atlas atlas      4096 Oct  4 22:22 pilot3
2025-10-05 21:08:48 (3316155): Guest Log: -rw-------. 1 atlas atlas 195610405 Oct  5 17:34 HITS.46373048._096923.pool.root.1
2025-10-05 21:08:48 (3316155): Guest Log: -rw-------. 1 atlas atlas      1001 Oct  5 17:35 memory_monitor_summary.json
2025-10-05 21:08:48 (3316155): Guest Log: -rw-------. 1 atlas atlas   1560401 Oct  5 17:35 agis_ddmendpoints.agis.ALL.json
2025-10-05 21:08:48 (3316155): Guest Log: -rw-------. 1 atlas atlas    977155 Oct  5 17:35 log.46373048._096923.job.log.tgz.1
2025-10-05 21:08:48 (3316155): Guest Log: -rw-------. 1 atlas atlas        95 Oct  5 19:07 pilot_heartbeat.json
2025-10-05 21:08:48 (3316155): Guest Log: -rw-------. 1 atlas atlas      7751 Oct  5 19:07 heartbeat.json
2025-10-05 21:08:48 (3316155): Guest Log: -rw-------. 1 atlas atlas      4805 Oct  5 19:08 pilotlog.txt
2025-10-05 21:08:48 (3316155): Guest Log: -rw-------. 1 atlas atlas   8311136 Oct  5 19:08 log.46373048._096923.job.log.1
2025-10-05 21:08:48 (3316155): Guest Log: -rw-------. 1 atlas atlas       357 Oct  5 19:08 output.list
2025-10-05 21:08:48 (3316155): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct  5 19:08 runtime_log
2025-10-05 21:08:48 (3316155): Guest Log: -rw-------. 1 atlas atlas   9308160 Oct  5 19:08 result.tar.gz
2025-10-05 21:08:48 (3316155): Guest Log: -rw-r--r--. 1 atlas atlas      8613 Oct  5 19:08 runtime_log.err
2025-10-05 21:08:48 (3316155): Guest Log: -rw-------. 1 atlas atlas       652 Oct  5 19:08 gekMDmcFOP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm2cMNDm5BuRDo.diag
2025-10-05 21:08:48 (3316155): Guest Log: Looking for outputfile HITS.46373048._096923.pool.root.1
2025-10-05 21:08:48 (3316155): Guest Log: HITS file was successfully produced
2025-10-05 21:08:48 (3316155): Guest Log: -rw-------. 1 atlas atlas 195610405 Oct  5 17:34 /home/atlas/RunAtlas/HITS.46373048._096923.pool.root.1
2025-10-05 21:08:48 (3316155): Guest Log: Successfully finished the ATLAS job!
2025-10-05 21:08:48 (3316155): Guest Log: Copying the results back to the shared directory!
2025-10-05 21:08:48 (3316155): Guest Log:  *** Contents of shared directory: ***
2025-10-05 21:08:49 (3316155): Guest Log: total 225304
2025-10-05 21:08:49 (3316155): Guest Log: -rw-r--r--. 1 root root 220804073 Oct  4 22:19 ATLAS.root_0
2025-10-05 21:08:49 (3316155): Guest Log: -rw-r--r--. 1 root root      6860 Oct  4 22:19 init_data.xml
2025-10-05 21:08:49 (3316155): Guest Log: -rw-r--r--. 1 root root    565607 Oct  4 22:19 input.tar.gz
2025-10-05 21:08:49 (3316155): Guest Log: -rw-r--r--. 1 root root   9308160 Oct  5 19:08 result.tar.gz
2025-10-05 21:08:49 (3316155): Guest Log: -rw-r--r--. 1 root root     15120 Oct  4 22:19 start_atlas.sh
2025-10-05 21:08:49 (3316155): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-05 21:08:49 (3316155): VM Completion File Detected.
2025-10-05 21:08:49 (3316155): Powering off VM.
2025-10-05 21:08:49 (3316155): Successfully stopped VM.
2025-10-05 21:08:49 (3316155): Deregistering VM. (boinc_e86d9ad42e4e21f6, slot#1)
2025-10-05 21:08:49 (3316155): Removing network bandwidth throttle group from VM.
2025-10-05 21:08:49 (3316155): Removing VM from VirtualBox.
2025-10-05 21:08:55 (3316155): called boinc_finish(0)

</stderr_txt>
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