Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:41:45 (76479): wrapper (7.7.26015): starting
13:41:45 (76479): wrapper: running run_atlas (--nthreads 8)
[2025-10-04 13:41:45] Arguments: --nthreads 8
[2025-10-04 13:41:45] Threads: 8
[2025-10-04 13:41:45] Checking for CVMFS
[2025-10-04 13:41:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-04 13:41:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-04 13:41:46] Running cvmfs_config stat atlas.cern.ch
[2025-10-04 13:41:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-04 13:41:47] 2.11.3.0 1870 20418 210816 151339 0 376 32990927 45568001 14703 130560 0 92352823 99.791 60103649 24922 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-10-04 13:41:47] CVMFS is ok
[2025-10-04 13:41:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-04 13:41:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-04 13:41:47] Further information can be found at the LHC@home message board.
[2025-10-04 13:41:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-04 13:41:47] Checking for apptainer binary...
[2025-10-04 13:41:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-04 13:41:47] Running /usr/bin/apptainer --version
[2025-10-04 13:41:47] apptainer version 1.4.1-1.el9
[2025-10-04 13:41:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-04 13:41:48] wns0015.triumf.lcg
[2025-10-04 13:41:48] apptainer works
[2025-10-04 13:41:49] Set ATHENA_PROC_NUMBER=8
[2025-10-04 13:41:49] Set ATHENA_CORE_NUMBER=8
[2025-10-04 13:41:49] Starting ATLAS job with PandaID=6830134567
[2025-10-04 13:41:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-04 13:48:46]  *** The last 200 lines of the pilot log: ***
[2025-10-04 13:48:46] 2025-10-04 20:47:39,581 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-04 13:48:46] 2025-10-04 20:47:39,581 | WARNING  | wrong length of table data, x=[1759610687.0], y=[1533.0] (must be same and length>=4)
[2025-10-04 13:48:46] 2025-10-04 20:47:39,582 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-10-04 13:48:46] 2025-10-04 20:47:39,582 | INFO     | ..............................
[2025-10-04 13:48:46] 2025-10-04 20:47:39,582 | INFO     | . Timing measurements:
[2025-10-04 13:48:46] 2025-10-04 20:47:39,582 | INFO     | . get job = 1 s
[2025-10-04 13:48:46] 2025-10-04 20:47:39,582 | INFO     | . initial setup = 6 s
[2025-10-04 13:48:46] 2025-10-04 20:47:39,582 | INFO     | . payload setup = 58 s
[2025-10-04 13:48:46] 2025-10-04 20:47:39,582 | INFO     | . stage-in = 0 s
[2025-10-04 13:48:46] 2025-10-04 20:47:39,582 | INFO     | . payload execution = 49 s
[2025-10-04 13:48:46] 2025-10-04 20:47:39,582 | INFO     | . stage-out = 1 s
[2025-10-04 13:48:46] 2025-10-04 20:47:39,582 | INFO     | . log creation = 0 s
[2025-10-04 13:48:46] 2025-10-04 20:47:39,582 | INFO     | ..............................
[2025-10-04 13:48:46] 2025-10-04 20:47:39,582 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-04 13:48:46] 2025-10-04 20:47:39,583 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6830134567/pilotlog.txt
[2025-10-04 13:48:46] 2025-10-04 20:47:39,655 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-04 13:48:46] - Log from pilotlog.txt -
[2025-10-04 13:48:46] 2025-10-04 20:47:39,579 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6830134567/memory_monitor_summary.json (trf name=prmon)
[2025-10-04 13:48:46] 2025-10-04 20:47:39,580 | INFO     | extracted standard info from prmon json
[2025-10-04 13:48:46] 2025-10-04 20:47:39,580 | INFO     | extracted standard memory fields from prmon json
[2025-10-04 13:48:46] 2025-10-04 20:47:39,580 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-04 13:48:46] 2025-10-04 20:47:39,581 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-04 13:48:46] 2025-10-04 20:47:39,581 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-04 13:48:46] 2025-10-04 20:47:39,581 | WARNING  | wrong length of table data, x=[1759610687.0], y=[1533.0] (must be same and length>=4)
[2025-10-04 13:48:46] 2025-10-04 20:47:39,582 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-10-04 13:48:46] 2025-10-04 20:47:39,582 | INFO     | ..............................
[2025-10-04 13:48:46] 2025-10-04 20:47:39,582 | INFO     | . Timing measurements:
[2025-10-04 13:48:46] 2025-10-04 20:47:39,582 | INFO     | . get job = 1 s
[2025-10-04 13:48:46] 2025-10-04 20:47:39,582 | INFO     | . initial setup = 6 s
[2025-10-04 13:48:46] 2025-10-04 20:47:39,582 | INFO     | . payload setup = 58 s
[2025-10-04 13:48:46] 2025-10-04 20:47:39,582 | INFO     | . stage-in = 0 s
[2025-10-04 13:48:46] 2025-10-04 20:47:39,582 | INFO     | . payload execution = 49 s
[2025-10-04 13:48:46] 2025-10-04 20:47:39,582 | INFO     | . stage-out = 1 s
[2025-10-04 13:48:46] 2025-10-04 20:47:39,582 | INFO     | . log creation = 0 s
[2025-10-04 13:48:46] 2025-10-04 20:47:39,582 | INFO     | ..............................
[2025-10-04 13:48:46] 2025-10-04 20:47:39,582 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-04 13:48:46] 2025-10-04 20:47:39,583 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6830134567/pilotlog.txt
[2025-10-04 13:48:46] 2025-10-04 20:47:39,656 | WARNING  | 
[2025-10-04 13:48:46] [begin log extracts]
[2025-10-04 13:48:46] - Log from pilotlog.txt -
[2025-10-04 13:48:46] 2025-10-04 20:47:39,579 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6830134567/memory_monitor_summary.json (trf name=prmon)
[2025-10-04 13:48:46] 2025-10-04 20:47:39,580 | INFO     | extracted standard info from prmon json
[2025-10-04 13:48:46] 2025-10-04 20:47:39,580 | INFO     | extracted standard memory fields from prmon json
[2025-10-04 13:48:46] 2025-10-04 20:47:39,580 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-04 13:48:46] 2025-10-04 20:47:39,581 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-04 13:48:46] 2025-10-04 20:47:39,581 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-04 13:48:46] 2025-10-04 20:47:39,581 | WARNING  | wrong length of table data, x=[1759610687.0], y=[1533.0] (must be same and length>=4)
[2025-10-04 13:48:46] 2025-10-04 20:47:39,582 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-10-04 13:48:46] 2025-10-04 20:47:39,582 | INFO     | ..............................
[2025-10-04 13:48:46] 2025-10-04 20:47:39,582 | INFO     | . Timing measurements:
[2025-10-04 13:48:46] 2025-10-04 20:47:39,582 | INFO     | . get job = 1 s
[2025-10-04 13:48:46] 2025-10-04 20:47:39,582 | INFO     | . initial setup = 6 s
[2025-10-04 13:48:46] 2025-10-04 20:47:39,582 | INFO     | . payload setup = 58 s
[2025-10-04 13:48:46] 2025-10-04 20:47:39,582 | INFO     | . stage-in = 0 s
[2025-10-04 13:48:46] 2025-10-04 20:47:39,582 | INFO     | . payload execution = 49 s
[2025-10-04 13:48:46] 2025-10-04 20:47:39,582 | INFO     | . stage-out = 1 s
[2025-10-04 13:48:46] 2025-10-04 20:47:39,582 | INFO     | . log creation = 0 s
[2025-10-04 13:48:46] 2025-10-04 20:47:39,582 | INFO     | ..............................
[2025-10-04 13:48:46] 2025-10-04 20:47:39,582 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-04 13:48:46] 2025-10-04 20:47:39,583 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6830134567/pilotlog.txt
[2025-10-04 13:48:46] [end log extracts]
[2025-10-04 13:48:46] 2025-10-04 20:47:39,656 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-04 13:48:46] 2025-10-04 20:47:39,656 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-10-04 13:48:46] 2025-10-04 20:47:40,554 | INFO     | 
[2025-10-04 13:48:46] 2025-10-04 20:47:40,565 | INFO     | job summary report
[2025-10-04 13:48:46] 2025-10-04 20:47:40,565 | INFO     | --------------------------------------------------
[2025-10-04 13:48:46] 2025-10-04 20:47:40,565 | INFO     | PanDA job id: 6830134567
[2025-10-04 13:48:46] 2025-10-04 20:47:40,565 | INFO     | task id: 46376905
[2025-10-04 13:48:46] 2025-10-04 20:47:40,565 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-04 13:45:12,284 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-04 13:48:46] 2025-10-04 20:47:40,566 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-04 13:48:46] 2025-10-04 20:47:40,566 | INFO     | pilot state: failed 
[2025-10-04 13:48:46] 2025-10-04 20:47:40,566 | INFO     | transexitcode: 65
[2025-10-04 13:48:46] 2025-10-04 20:47:40,566 | INFO     | exeerrorcode: 65
[2025-10-04 13:48:46] 2025-10-04 20:47:40,566 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-10-04 13:48:46] 2025-10-04 20:47:40,566 | INFO     | exitcode: 65
[2025-10-04 13:48:46] 2025-10-04 20:47:40,566 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-10-04 13:48:46] 2025-10-04 20:47:40,566 | INFO     | cpuconsumptiontime: 19 s
[2025-10-04 13:48:46] 2025-10-04 20:47:40,566 | INFO     | nevents: 0
[2025-10-04 13:48:46] 2025-10-04 20:47:40,566 | INFO     | neventsw: 0
[2025-10-04 13:48:46] 2025-10-04 20:47:40,566 | INFO     | pid: 87111
[2025-10-04 13:48:46] 2025-10-04 20:47:40,566 | INFO     | pgrp: 87111
[2025-10-04 13:48:46] 2025-10-04 20:47:40,566 | INFO     | corecount: 8
[2025-10-04 13:48:46] 2025-10-04 20:47:40,566 | INFO     | event service: False
[2025-10-04 13:48:46] 2025-10-04 20:47:40,566 | INFO     | sizes: {0: 2347986, 1: 2348584, 2: 2348867, 14: 2348867, 19: 2349157, 25: 2349185, 112: 2372603, 116: 2376895, 117: 2376951, 247: 2377117}
[2025-10-04 13:48:46] 2025-10-04 20:47:40,567 | INFO     | --------------------------------------------------
[2025-10-04 13:48:46] 2025-10-04 20:47:40,567 | INFO     | 
[2025-10-04 13:48:46] 2025-10-04 20:47:40,567 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-10-04 13:48:46] 2025-10-04 20:47:40,599 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-04 13:48:46] 2025-10-04 20:47:40,600 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-04 13:48:46] 2025-10-04 20:47:40,600 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-04 13:48:46] 2025-10-04 20:47:40,600 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-04 13:48:46] 2025-10-04 20:47:40,600 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-04 13:48:46] 2025-10-04 20:47:40,600 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-04 13:48:46] 2025-10-04 20:47:40,600 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-04 13:48:46] 2025-10-04 20:47:40,600 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-04 13:48:46] 2025-10-04 20:47:40,600 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-04 13:48:46] 2025-10-04 20:47:40,600 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-04 13:48:46] 2025-10-04 20:47:40,600 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-04 13:48:46] 2025-10-04 20:47:40,600 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-04 13:48:46] 2025-10-04 20:47:40,601 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-04 13:48:46] 2025-10-04 20:47:40,601 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-04 13:48:46] 2025-10-04 20:47:40,601 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-04 13:48:46] 2025-10-04 20:47:40,601 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-04 13:48:46] 2025-10-04 20:47:40,601 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-04 13:48:46] 2025-10-04 20:47:40,601 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-04 13:48:46] 2025-10-04 20:47:40,601 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-04 13:48:46] 2025-10-04 20:47:40,601 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-04 13:48:46] 2025-10-04 20:47:40,601 | INFO     | job 6830134567 has completed (purged errors)
[2025-10-04 13:48:46] 2025-10-04 20:47:40,601 | INFO     | overall cleanup function is called
[2025-10-04 13:48:46] 2025-10-04 20:47:40,924 | INFO     | PID=80263 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-04 13:48:46] 2025-10-04 20:47:40,925 | INFO     | .. there are 26 such processes running
[2025-10-04 13:48:46] 2025-10-04 20:47:41,608 | INFO     | --- collectZombieJob: --- 10, [87111]
[2025-10-04 13:48:46] 2025-10-04 20:47:41,608 | INFO     | zombie collector waiting for pid 87111
[2025-10-04 13:48:46] 2025-10-04 20:47:41,608 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-04 13:48:46] 2025-10-04 20:47:41,608 | INFO     | collected zombie processes
[2025-10-04 13:48:46] 2025-10-04 20:47:41,609 | INFO     | will attempt to kill all subprocesses of pid=87111
[2025-10-04 13:48:46] 2025-10-04 20:47:42,337 | INFO     | process IDs to be killed: [87111] (in reverse order)
[2025-10-04 13:48:46] 2025-10-04 20:47:42,781 | WARNING  | found no corresponding commands to process id(s)
[2025-10-04 13:48:46] 2025-10-04 20:47:42,782 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-04 13:48:46] 2025-10-04 20:47:42,794 | INFO     | did not find any defunct processes belonging to 87111
[2025-10-04 13:48:46] 2025-10-04 20:47:42,801 | INFO     | did not find any defunct processes belonging to 87111
[2025-10-04 13:48:46] 2025-10-04 20:47:42,801 | INFO     | ready for new job
[2025-10-04 13:48:46] 2025-10-04 20:47:42,801 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-04 13:48:46] 2025-10-04 20:47:42,802 | INFO     | ***************************************
[2025-10-04 13:48:46] 2025-10-04 20:47:42,803 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-04 13:48:46] 2025-10-04 20:47:42,803 | INFO     | ***************************************
[2025-10-04 13:48:46] 2025-10-04 20:47:42,803 | INFO     | 
[2025-10-04 13:48:46] 2025-10-04 20:47:42,804 | INFO     | architecture information:
[2025-10-04 13:48:46] 2025-10-04 20:47:42,804 | INFO     | executing command: cat /etc/os-release
[2025-10-04 13:48:46] 2025-10-04 20:47:42,822 | INFO     | cat /etc/os-release:
[2025-10-04 13:48:46] NAME="CentOS Linux"
[2025-10-04 13:48:46] VERSION="7 (Core)"
[2025-10-04 13:48:46] ID="centos"
[2025-10-04 13:48:46] ID_LIKE="rhel fedora"
[2025-10-04 13:48:46] VERSION_ID="7"
[2025-10-04 13:48:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-04 13:48:46] ANSI_COLOR="0;31"
[2025-10-04 13:48:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-04 13:48:46] HOME_URL="https://www.centos.org/"
[2025-10-04 13:48:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-04 13:48:46] 
[2025-10-04 13:48:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-04 13:48:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-04 13:48:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-04 13:48:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-04 13:48:46] 
[2025-10-04 13:48:46] 2025-10-04 20:47:42,822 | INFO     | ***************************************
[2025-10-04 13:48:46] 2025-10-04 20:47:43,326 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-10-04 13:48:46] 2025-10-04 20:47:43,456 | INFO     | sufficient remaining disk space (1324860047360 B)
[2025-10-04 13:48:46] 2025-10-04 20:47:43,457 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-04 13:48:46] 2025-10-04 20:47:43,457 | INFO     | current server update state: UPDATING_FINAL
[2025-10-04 13:48:46] 2025-10-04 20:47:43,457 | INFO     | update_server=False
[2025-10-04 13:48:46] 2025-10-04 20:47:43,457 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-04 13:48:46] 2025-10-04 20:47:43,458 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-04 13:48:46] 2025-10-04 20:47:43,825 | INFO     | all payload control threads have been joined
[2025-10-04 13:48:46] 2025-10-04 20:47:43,841 | INFO     | all job control threads have been joined
[2025-10-04 13:48:46] 2025-10-04 20:47:44,130 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-04 13:48:46] 2025-10-04 20:47:44,130 | INFO     | aborting loop
[2025-10-04 13:48:46] 2025-10-04 20:47:44,219 | INFO     | all data control threads have been joined
[2025-10-04 13:48:46] 2025-10-04 20:47:44,463 | INFO     | [job] retrieve thread has finished
[2025-10-04 13:48:46] 2025-10-04 20:47:44,749 | INFO     | [payload] failed_post thread has finished
[2025-10-04 13:48:46] 2025-10-04 20:47:44,788 | INFO     | [payload] validate_pre thread has finished
[2025-10-04 13:48:46] 2025-10-04 20:47:44,832 | INFO     | [payload] control thread has finished
[2025-10-04 13:48:46] 2025-10-04 20:47:44,847 | INFO     | [job] control thread has finished
[2025-10-04 13:48:46] 2025-10-04 20:47:44,859 | INFO     | [job] create_data_payload thread has finished
[2025-10-04 13:48:46] 2025-10-04 20:47:44,968 | INFO     | [payload] execute_payloads thread has finished
[2025-10-04 13:48:46] 2025-10-04 20:47:45,071 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-04 13:48:46] 2025-10-04 20:47:45,136 | INFO     | [job] job monitor thread has finished
[2025-10-04 13:48:46] 2025-10-04 20:47:45,225 | INFO     | [data] control thread has finished
[2025-10-04 13:48:46] 2025-10-04 20:47:45,345 | INFO     | [data] copytool_in thread has finished
[2025-10-04 13:48:46] 2025-10-04 20:47:45,451 | INFO     | [job] validate thread has finished
[2025-10-04 13:48:46] 2025-10-04 20:47:45,465 | INFO     | [data] copytool_out thread has finished
[2025-10-04 13:48:46] 2025-10-04 20:47:45,755 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-04 13:48:46] 2025-10-04 20:47:45,800 | INFO     | [payload] validate_post thread has finished
[2025-10-04 13:48:46] 2025-10-04 20:47:46,077 | INFO     | [job] queue monitor thread has finished
[2025-10-04 13:48:46] 2025-10-04 20:47:46,855 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-04 13:48:46] 2025-10-04 20:47:50,871 | INFO     | [data] queue_monitor thread has finished
[2025-10-04 13:48:46] 2025-10-04 20:48:13,267 | INFO     | PID=80263 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-04 13:48:46] 2025-10-04 20:48:13,267 | INFO     | .. there are 26 such processes running
[2025-10-04 13:48:46] 2025-10-04 20:48:13,268 | INFO     | found 0 job(s) in 20 queues
[2025-10-04 13:48:46] 2025-10-04 20:48:13,268 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-04 13:48:46] 2025-10-04 20:48:13,268 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-04 13:48:46] 2025-10-04 20:48:39,704 | INFO     | [monitor] cgroup control has ended
[2025-10-04 13:48:46] 2025-10-04 20:48:40,553 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139730414675776)>', '<ExcThread(monitor, started 139729873905408)>']
[2025-10-04 13:48:46] 2025-10-04 20:48:41,490 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-04 13:48:46] 2025-10-04 20:48:41,491 | INFO     | [monitor] control thread has ended
[2025-10-04 13:48:46] 2025-10-04 20:48:45,580 | INFO     | all workflow threads have been joined
[2025-10-04 13:48:46] 2025-10-04 20:48:45,580 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-04 13:48:46] 2025-10-04 20:48:45,581 | INFO     | traces error code: 0
[2025-10-04 13:48:46] 2025-10-04 20:48:45,581 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-04 13:48:46] 2025-10-04 20:48:46,088 [wrapper] ==== pilot stdout END ====
[2025-10-04 13:48:46] 2025-10-04 20:48:46,091 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-04 13:48:46] 2025-10-04 20:48:46,093 [wrapper] pilotpid: 80263
[2025-10-04 13:48:46] 2025-10-04 20:48:46,094 [wrapper] Pilot exit status: 0
[2025-10-04 13:48:46] 2025-10-04 20:48:46,216 [wrapper] pandaids: 6830134567
[2025-10-04 13:48:46] 2025-10-04 20:48:46,368 [wrapper] cleanup supervisor_pilot   80269 80264
[2025-10-04 13:48:46] 2025-10-04 20:48:46,371 [wrapper] Test setup, not cleaning
[2025-10-04 13:48:46] 2025-10-04 20:48:46,374 [wrapper] apfmon messages muted
[2025-10-04 13:48:46] 2025-10-04 20:48:46,376 [wrapper] ==== wrapper stdout END ====
[2025-10-04 13:48:46] 2025-10-04 20:48:46,378 [wrapper] ==== wrapper stderr END ====
[2025-10-04 13:48:46]  *** Error codes and diagnostics ***
[2025-10-04 13:48:46]     "exeErrorCode": 65,
[2025-10-04 13:48:46]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-10-04 13:48:46]     "pilotErrorCode": 1305,
[2025-10-04 13:48:46]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-10-04 13:48:46]  *** Listing of results directory ***
[2025-10-04 13:48:46] total 213400
[2025-10-04 13:48:46] -rw-r--r--. 1 boinc boinc    552446 Oct  4 11:41 pilot3.tar.gz
[2025-10-04 13:48:46] -rw-r--r--. 1 boinc boinc      5112 Oct  4 11:45 queuedata.json
[2025-10-04 13:48:46] -rwx------. 1 boinc boinc     36292 Oct  4 11:48 runpilot2-wrapper.sh
[2025-10-04 13:48:46] -rw-r--r--. 1 boinc boinc       100 Oct  4 13:41 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-04 13:48:46] -rwxr-xr-x. 1 boinc boinc      7986 Oct  4 13:41 run_atlas
[2025-10-04 13:48:46] -rw-r--r--. 1 boinc boinc       105 Oct  4 13:41 job.xml
[2025-10-04 13:48:46] -rw-r--r--. 1 boinc boinc      6444 Oct  4 13:41 init_data.xml
[2025-10-04 13:48:46] -rw-r--r--. 2 boinc boinc 214416123 Oct  4 13:41 EVNT.46376901._002371.pool.root.1
[2025-10-04 13:48:46] -rw-r--r--. 2 boinc boinc     15120 Oct  4 13:41 start_atlas.sh
[2025-10-04 13:48:46] drwxrwx--x. 2 boinc boinc      4096 Oct  4 13:41 shared
[2025-10-04 13:48:46] -rw-r--r--. 2 boinc boinc    565605 Oct  4 13:41 input.tar.gz
[2025-10-04 13:48:46] -rw-r--r--. 1 boinc boinc         0 Oct  4 13:41 boinc_lockfile
[2025-10-04 13:48:46] -rw-r--r--. 1 boinc boinc      2518 Oct  4 13:41 pandaJob.out
[2025-10-04 13:48:46] -rw-r--r--. 1 boinc boinc      2061 Oct  4 13:41 stderr.txt
[2025-10-04 13:48:46] -rw-------. 1 boinc boinc    973982 Oct  4 13:42 agis_schedconf.cvmfs.json
[2025-10-04 13:48:46] -rw-------. 1 boinc boinc   1560401 Oct  4 13:42 agis_ddmendpoints.agis.ALL.json
[2025-10-04 13:48:46] drwx------. 4 boinc boinc      4096 Oct  4 13:42 pilot3
[2025-10-04 13:48:46] -rw-r--r--. 1 boinc boinc       525 Oct  4 13:45 boinc_task_state.xml
[2025-10-04 13:48:46] -rw-------. 1 boinc boinc       971 Oct  4 13:45 memory_monitor_summary.json
[2025-10-04 13:48:46] -rw-------. 1 boinc boinc     22597 Oct  4 13:45 log.46376905._065493.job.log.tgz.1
[2025-10-04 13:48:46] -rw-------. 1 boinc boinc        95 Oct  4 13:47 pilot_heartbeat.json
[2025-10-04 13:48:46] -rw-------. 1 boinc boinc      8383 Oct  4 13:47 heartbeat.json
[2025-10-04 13:48:46] -rw-r--r--. 1 boinc boinc        23 Oct  4 13:48 wrapper_checkpoint.txt
[2025-10-04 13:48:46] -rw-r--r--. 1 boinc boinc      8192 Oct  4 13:48 boinc_mmap_file
[2025-10-04 13:48:46] -rw-------. 1 boinc boinc      4821 Oct  4 13:48 pilotlog.txt
[2025-10-04 13:48:46] -rw-------. 1 boinc boinc     97080 Oct  4 13:48 log.46376905._065493.job.log.1
[2025-10-04 13:48:46] -rw-------. 1 boinc boinc       188 Oct  4 13:48 output.list
[2025-10-04 13:48:46] -rw-r--r--. 1 boinc boinc       620 Oct  4 13:48 runtime_log
[2025-10-04 13:48:46] -rw-------. 1 boinc boinc    143360 Oct  4 13:48 result.tar.gz
[2025-10-04 13:48:46] -rw-r--r--. 1 boinc boinc      8526 Oct  4 13:48 runtime_log.err
[2025-10-04 13:48:46] -rw-------. 1 boinc boinc       645 Oct  4 13:48 2reKDmGUMP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm1IMNDmQtgrEm.diag
[2025-10-04 13:48:46] No HITS result produced
[2025-10-04 13:48:46]  *** Contents of shared directory: ***
[2025-10-04 13:48:46] total 210108
[2025-10-04 13:48:46] -rw-r--r--. 2 boinc boinc 214416123 Oct  4 13:41 ATLAS.root_0
[2025-10-04 13:48:46] -rw-r--r--. 2 boinc boinc     15120 Oct  4 13:41 start_atlas.sh
[2025-10-04 13:48:46] -rw-r--r--. 2 boinc boinc    565605 Oct  4 13:41 input.tar.gz
[2025-10-04 13:48:46] -rw-------. 1 boinc boinc    143360 Oct  4 13:48 result.tar.gz
13:48:48 (76479): run_atlas exited; CPU time 31.407804
13:48:48 (76479): called boinc_finish(0)

</stderr_txt>
]]>

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