Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:20:50 (28280): wrapper (7.7.26015): starting
14:20:50 (28280): wrapper: running run_atlas (--nthreads 8)
[2025-10-05 14:20:50] Arguments: --nthreads 8
[2025-10-05 14:20:50] Threads: 8
[2025-10-05 14:20:50] Checking for CVMFS
[2025-10-05 14:20:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-05 14:20:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-05 14:20:51] Running cvmfs_config stat atlas.cern.ch
[2025-10-05 14:20:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-05 14:20:53] 2.11.2.0 31978 210433 140132 151363 1 118 20581854 25165825 4150 130560 0 111119697 99.882 60749654 3225 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-05 14:20:53] CVMFS is ok
[2025-10-05 14:20:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-05 14:20:53] Checking for apptainer binary...
[2025-10-05 14:20:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-05 14:20:53] Running /usr/bin/apptainer --version
[2025-10-05 14:20:53] apptainer version 1.3.2-1.el7
[2025-10-05 14:20:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-05 14:21:06] cg-vwn266.simple-grid.lan
[2025-10-05 14:21:06] apptainer works
[2025-10-05 14:21:07] Set ATHENA_PROC_NUMBER=8
[2025-10-05 14:21:07] Set ATHENA_CORE_NUMBER=8
[2025-10-05 14:21:07] Starting ATLAS job with PandaID=6828675375
[2025-10-05 14:21:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-05 20:05:15]  *** The last 200 lines of the pilot log: ***
[2025-10-05 20:05:16] 2025-10-05 18:04:18,781 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2025-10-05 20:05:16] 2025-10-05 18:04:18,783 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-6828675375/memory_monitor_summary.json (trf name=prmon)
[2025-10-05 20:05:16] 2025-10-05 18:04:18,784 | INFO     | extracted standard info from prmon json
[2025-10-05 20:05:16] 2025-10-05 18:04:18,784 | INFO     | extracted standard memory fields from prmon json
[2025-10-05 20:05:16] 2025-10-05 18:04:18,784 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-05 20:05:16] 2025-10-05 18:04:18,785 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-05 20:05:16] 2025-10-05 18:04:18,785 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-05 20:05:16] 2025-10-05 18:04:18,807 | INFO     | fitting pss+swap vs Time
[2025-10-05 20:05:16] 2025-10-05 18:04:18,808 | INFO     | sum of square deviations: 11042365180.0
[2025-10-05 20:05:16] 2025-10-05 18:04:18,811 | INFO     | sum of deviations: 21792163075.000004
[2025-10-05 20:05:16] 2025-10-05 18:04:18,817 | INFO     | mean x: 1759677298.0
[2025-10-05 20:05:16] 2025-10-05 18:04:18,817 | INFO     | mean y: 2488034.8145896657
[2025-10-05 20:05:16] 2025-10-05 18:04:18,817 | INFO     | -- intersect: -3470243939.929917
[2025-10-05 20:05:16] 2025-10-05 18:04:18,818 | INFO     | intersect: -3470243939.929917
[2025-10-05 20:05:16] 2025-10-05 18:04:18,818 | INFO     | chi2: 4.588308440950208
[2025-10-05 20:05:16] 2025-10-05 18:04:18,819 | INFO     | sum of square deviations: 10546523325.0
[2025-10-05 20:05:16] 2025-10-05 18:04:18,822 | INFO     | sum of deviations: 44671480929.50001
[2025-10-05 20:05:16] 2025-10-05 18:04:18,822 | INFO     | mean x: 1759677145.5
[2025-10-05 20:05:16] 2025-10-05 18:04:18,822 | INFO     | mean y: 2494983.6327160494
[2025-10-05 20:05:16] 2025-10-05 18:04:18,822 | INFO     | -- intersect: -7450898103.826299
[2025-10-05 20:05:16] 2025-10-05 18:04:18,823 | INFO     | intersect: -7450898103.826299
[2025-10-05 20:05:16] 2025-10-05 18:04:18,823 | INFO     | chi2: 3.7375530344719645
[2025-10-05 20:05:16] 2025-10-05 18:04:18,823 | INFO     | current chi2=3.7375530344719645 (change=18.54180941467087 %)
[2025-10-05 20:05:16] 2025-10-05 18:04:18,823 | INFO     | right removable region: 323
[2025-10-05 20:05:16] 2025-10-05 18:04:18,824 | INFO     | sum of square deviations: 10546523325.0
[2025-10-05 20:05:16] 2025-10-05 18:04:18,815 | INFO     | time since job start (20448s) is within the limit (172800.0s)
[2025-10-05 20:05:16] 2025-10-05 18:04:18,827 | INFO     | sum of deviations: -75905790694.5
[2025-10-05 20:05:16] 2025-10-05 18:04:18,836 | INFO     | mean x: 1759677450.5
[2025-10-05 20:05:16] 2025-10-05 18:04:18,836 | INFO     | mean y: 2518031.577160494
[2025-10-05 20:05:16] 2025-10-05 18:04:18,836 | INFO     | -- intersect: 12667327479.337461
[2025-10-05 20:05:16] 2025-10-05 18:04:18,837 | INFO     | intersect: 12667327479.337461
[2025-10-05 20:05:16] 2025-10-05 18:04:18,837 | INFO     | chi2: 1.2392699891596477
[2025-10-05 20:05:16] 2025-10-05 18:04:18,837 | INFO     | current chi2=1.2392699891596477 (change=72.99070005627165 %)
[2025-10-05 20:05:16] 2025-10-05 18:04:18,838 | INFO     | sum of square deviations: 10065751520.0
[2025-10-05 20:05:16] 2025-10-05 18:04:18,841 | INFO     | sum of deviations: -89743370921.99998
[2025-10-05 20:05:16] 2025-10-05 18:04:18,841 | INFO     | mean x: 1759677603.0
[2025-10-05 20:05:16] 2025-10-05 18:04:18,841 | INFO     | mean y: 2522399.1598746083
[2025-10-05 20:05:16] 2025-10-05 18:04:18,841 | INFO     | -- intersect: 15691306243.603992
[2025-10-05 20:05:16] 2025-10-05 18:04:18,842 | INFO     | intersect: 15691306243.603992
[2025-10-05 20:05:16] 2025-10-05 18:04:18,842 | INFO     | chi2: 1.1276766812839158
[2025-10-05 20:05:16] 2025-10-05 18:04:18,842 | INFO     | current chi2=1.1276766812839158 (change=9.004761581566546 %)
[2025-10-05 20:05:16] 2025-10-05 18:04:18,842 | INFO     | left removable region: 20
[2025-10-05 20:05:16] 2025-10-05 18:04:18,843 | INFO     | sum of square deviations: 8625843592.0
[2025-10-05 20:05:16] 2025-10-05 18:04:18,846 | INFO     | sum of deviations: -47658930949.99999
[2025-10-05 20:05:16] 2025-10-05 18:04:18,846 | INFO     | mean x: 1759677725.0
[2025-10-05 20:05:16] 2025-10-05 18:04:18,846 | INFO     | mean y: 2523943.0462046205
[2025-10-05 20:05:16] 2025-10-05 18:04:18,846 | INFO     | -- intersect: 9724976975.675697
[2025-10-05 20:05:16] 2025-10-05 18:04:18,846 | INFO     | intersect: 9724976975.675697
[2025-10-05 20:05:16] 2025-10-05 18:04:18,847 | INFO     | chi2: 0.2105709138302572
[2025-10-05 20:05:16] 2025-10-05 18:04:18,847 | INFO     | -- intersect: 9724976975.675697
[2025-10-05 20:05:16] 2025-10-05 18:04:18,847 | INFO     | current memory leak: -5.53 B/s (using 303 data points, chi2=0.21)
[2025-10-05 20:05:16] 2025-10-05 18:04:18,848 | INFO     | could have reported an average CPU frequency of 1999 MHz (14 samples)
[2025-10-05 20:05:16] 2025-10-05 18:04:18,848 | INFO     | ..............................
[2025-10-05 20:05:16] 2025-10-05 18:04:18,848 | INFO     | . Timing measurements:
[2025-10-05 20:05:16] 2025-10-05 18:04:18,848 | INFO     | . get job = 0 s
[2025-10-05 20:05:16] 2025-10-05 18:04:18,848 | INFO     | . initial setup = 8 s
[2025-10-05 20:05:16] 2025-10-05 18:04:18,848 | INFO     | . payload setup = 78 s
[2025-10-05 20:05:16] 2025-10-05 18:04:18,849 | INFO     | . stage-in = 0 s
[2025-10-05 20:05:16] 2025-10-05 18:04:18,849 | INFO     | . payload execution = 20157 s
[2025-10-05 20:05:16] 2025-10-05 18:04:18,849 | INFO     | . stage-out = 9 s
[2025-10-05 20:05:16] 2025-10-05 18:04:18,849 | INFO     | . log creation = 1 s
[2025-10-05 20:05:16] 2025-10-05 18:04:18,849 | INFO     | ..............................
[2025-10-05 20:05:16] 2025-10-05 18:04:19,211 | INFO     | 
[2025-10-05 20:05:16] 2025-10-05 18:04:19,212 | INFO     | job summary report
[2025-10-05 20:05:16] 2025-10-05 18:04:19,212 | INFO     | --------------------------------------------------
[2025-10-05 20:05:16] 2025-10-05 18:04:19,212 | INFO     | PanDA job id: 6828675375
[2025-10-05 20:05:16] 2025-10-05 18:04:19,218 | INFO     | task id: 46373048
[2025-10-05 20:05:16] 2025-10-05 18:04:19,218 | INFO     | errors: (none)
[2025-10-05 20:05:16] 2025-10-05 18:04:19,218 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-05 20:05:16] 2025-10-05 18:04:19,218 | INFO     | pilot state: finished 
[2025-10-05 20:05:16] 2025-10-05 18:04:19,219 | INFO     | transexitcode: 0
[2025-10-05 20:05:16] 2025-10-05 18:04:19,219 | INFO     | exeerrorcode: 0
[2025-10-05 20:05:16] 2025-10-05 18:04:19,219 | INFO     | exeerrordiag: 
[2025-10-05 20:05:16] 2025-10-05 18:04:19,219 | INFO     | exitcode: 0
[2025-10-05 20:05:16] 2025-10-05 18:04:19,219 | INFO     | exitmsg: OK
[2025-10-05 20:05:16] 2025-10-05 18:04:19,219 | INFO     | cpuconsumptiontime: 68166 s
[2025-10-05 20:05:16] 2025-10-05 18:04:19,219 | INFO     | nevents: 400
[2025-10-05 20:05:16] 2025-10-05 18:04:19,219 | INFO     | neventsw: 0
[2025-10-05 20:05:16] 2025-10-05 18:04:19,219 | INFO     | pid: 21739
[2025-10-05 20:05:16] 2025-10-05 18:04:19,219 | INFO     | pgrp: 21739
[2025-10-05 20:05:16] 2025-10-05 18:04:19,219 | INFO     | corecount: 8
[2025-10-05 20:05:16] 2025-10-05 18:04:19,219 | INFO     | event service: False
[2025-10-05 20:05:16] 2025-10-05 18:04:19,219 | INFO     | sizes: {0: 2347963, 1: 2348820, 2: 2348848, 12: 2348848, 23: 2348876, 34: 2348904, 45: 2349060, 49: 2349350, 56: 2349378, 20239: 2381986, 20240: 2381985, 20250: 23
[2025-10-05 20:05:16] 2025-10-05 18:04:19,220 | INFO     | --------------------------------------------------
[2025-10-05 20:05:16] 2025-10-05 18:04:19,220 | INFO     | 
[2025-10-05 20:05:16] 2025-10-05 18:04:19,220 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-10-05 20:05:16] 2025-10-05 18:04:19,535 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-05 20:05:16] 2025-10-05 18:04:19,535 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-05 20:05:16] 2025-10-05 18:04:19,535 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-05 20:05:16] 2025-10-05 18:04:19,535 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-05 20:05:16] 2025-10-05 18:04:19,535 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-05 20:05:16] 2025-10-05 18:04:19,535 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-05 20:05:16] 2025-10-05 18:04:19,535 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-05 20:05:16] 2025-10-05 18:04:19,536 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-05 20:05:16] 2025-10-05 18:04:19,536 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-05 20:05:16] 2025-10-05 18:04:19,536 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-05 20:05:16] 2025-10-05 18:04:19,536 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-05 20:05:16] 2025-10-05 18:04:19,536 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-05 20:05:16] 2025-10-05 18:04:19,536 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-05 20:05:16] 2025-10-05 18:04:19,536 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-05 20:05:16] 2025-10-05 18:04:19,536 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-05 20:05:16] 2025-10-05 18:04:19,536 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-05 20:05:16] 2025-10-05 18:04:19,536 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-05 20:05:16] 2025-10-05 18:04:19,536 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-05 20:05:16] 2025-10-05 18:04:19,536 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-05 20:05:16] 2025-10-05 18:04:19,537 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-05 20:05:16] 2025-10-05 18:04:19,537 | INFO     | job 6828675375 has completed (purged errors)
[2025-10-05 20:05:16] 2025-10-05 18:04:19,537 | INFO     | overall cleanup function is called
[2025-10-05 20:05:16] 2025-10-05 18:04:20,545 | INFO     | --- collectZombieJob: --- 10, [21739]
[2025-10-05 20:05:16] 2025-10-05 18:04:20,545 | INFO     | zombie collector waiting for pid 21739
[2025-10-05 20:05:16] 2025-10-05 18:04:20,545 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-05 20:05:16] 2025-10-05 18:04:20,546 | INFO     | collected zombie processes
[2025-10-05 20:05:16] 2025-10-05 18:04:20,546 | INFO     | will attempt to kill all subprocesses of pid=21739
[2025-10-05 20:05:16] 2025-10-05 18:04:20,665 | INFO     | process IDs to be killed: [21739] (in reverse order)
[2025-10-05 20:05:16] 2025-10-05 18:04:21,262 | WARNING  | found no corresponding commands to process id(s)
[2025-10-05 20:05:16] 2025-10-05 18:04:21,262 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-05 20:05:16] 2025-10-05 18:04:21,266 | INFO     | did not find any defunct processes belonging to 21739
[2025-10-05 20:05:16] 2025-10-05 18:04:21,269 | INFO     | did not find any defunct processes belonging to 21739
[2025-10-05 20:05:16] 2025-10-05 18:04:21,269 | INFO     | ready for new job
[2025-10-05 20:05:16] 2025-10-05 18:04:21,269 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-05 20:05:16] 2025-10-05 18:04:21,272 | INFO     | ***************************************
[2025-10-05 20:05:16] 2025-10-05 18:04:21,272 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-05 20:05:16] 2025-10-05 18:04:21,272 | INFO     | ***************************************
[2025-10-05 20:05:16] 2025-10-05 18:04:21,272 | INFO     | 
[2025-10-05 20:05:16] 2025-10-05 18:04:21,273 | INFO     | pilot is running in a VM
[2025-10-05 20:05:16] 2025-10-05 18:04:21,273 | INFO     | architecture information:
[2025-10-05 20:05:16] 2025-10-05 18:04:21,288 | INFO     | executing command: cat /etc/os-release
[2025-10-05 20:05:16] 2025-10-05 18:04:21,487 | INFO     | cat /etc/os-release:
[2025-10-05 20:05:16] NAME="CentOS Linux"
[2025-10-05 20:05:16] VERSION="7 (Core)"
[2025-10-05 20:05:16] ID="centos"
[2025-10-05 20:05:16] ID_LIKE="rhel fedora"
[2025-10-05 20:05:16] VERSION_ID="7"
[2025-10-05 20:05:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-05 20:05:16] ANSI_COLOR="0;31"
[2025-10-05 20:05:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-05 20:05:16] HOME_URL="https://www.centos.org/"
[2025-10-05 20:05:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-05 20:05:16] 
[2025-10-05 20:05:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-05 20:05:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-05 20:05:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-05 20:05:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-05 20:05:16] 
[2025-10-05 20:05:16] 2025-10-05 18:04:21,488 | INFO     | ***************************************
[2025-10-05 20:05:16] 2025-10-05 18:04:21,990 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-10-05 20:05:16] 2025-10-05 18:04:22,098 | INFO     | sufficient remaining disk space (496034119680 B)
[2025-10-05 20:05:16] 2025-10-05 18:04:22,099 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-05 20:05:16] 2025-10-05 18:04:22,099 | INFO     | current server update state: UPDATING_FINAL
[2025-10-05 20:05:16] 2025-10-05 18:04:22,099 | INFO     | update_server=False
[2025-10-05 20:05:16] 2025-10-05 18:04:22,099 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-05 20:05:16] 2025-10-05 18:04:22,099 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-05 20:05:16] 2025-10-05 18:04:22,222 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-05 20:05:16] 2025-10-05 18:04:22,222 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-05 20:05:16] 2025-10-05 18:04:22,222 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-05 20:05:16] 2025-10-05 18:04:22,223 | INFO     | will abort loop
[2025-10-05 20:05:16] 2025-10-05 18:04:22,837 | INFO     | all payload control threads have been joined
[2025-10-05 20:05:16] 2025-10-05 18:04:22,992 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-05 20:05:16] 2025-10-05 18:04:23,104 | INFO     | [job] retrieve thread has finished
[2025-10-05 20:05:16] 2025-10-05 18:04:23,139 | INFO     | all job control threads have been joined
[2025-10-05 20:05:16] 2025-10-05 18:04:23,171 | INFO     | all data control threads have been joined
[2025-10-05 20:05:16] 2025-10-05 18:04:23,227 | INFO     | [job] job monitor thread has finished
[2025-10-05 20:05:16] 2025-10-05 18:04:23,250 | INFO     | [job] create_data_payload thread has finished
[2025-10-05 20:05:16] 2025-10-05 18:04:23,478 | INFO     | [job] validate thread has finished
[2025-10-05 20:05:16] 2025-10-05 18:04:23,656 | INFO     | [payload] execute_payloads thread has finished
[2025-10-05 20:05:16] 2025-10-05 18:04:23,698 | INFO     | [data] copytool_in thread has finished
[2025-10-05 20:05:16] 2025-10-05 18:04:23,740 | INFO     | [payload] failed_post thread has finished
[2025-10-05 20:05:16] 2025-10-05 18:04:23,843 | INFO     | [payload] control thread has finished
[2025-10-05 20:05:16] 2025-10-05 18:04:24,016 | INFO     | [payload] validate_post thread has finished
[2025-10-05 20:05:16] 2025-10-05 18:04:24,033 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-05 20:05:16] 2025-10-05 18:04:24,107 | INFO     | [data] copytool_out thread has finished
[2025-10-05 20:05:16] 2025-10-05 18:04:24,144 | INFO     | [job] control thread has finished
[2025-10-05 20:05:16] 2025-10-05 18:04:24,181 | INFO     | [data] control thread has finished
[2025-10-05 20:05:16] 2025-10-05 18:04:24,227 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-05 20:05:16] 2025-10-05 18:04:24,306 | INFO     | [payload] validate_pre thread has finished
[2025-10-05 20:05:16] 2025-10-05 18:04:25,236 | INFO     | [job] queue monitor thread has finished
[2025-10-05 20:05:16] 2025-10-05 18:04:27,001 | INFO     | [data] queue_monitor thread has finished
[2025-10-05 20:05:16] 2025-10-05 18:04:52,045 | INFO     | PID=32235 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-05 20:05:16] 2025-10-05 18:04:52,046 | INFO     | .. there are 9 such processes running
[2025-10-05 20:05:16] 2025-10-05 18:04:52,046 | INFO     | found 0 job(s) in 20 queues
[2025-10-05 20:05:16] 2025-10-05 18:04:52,047 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-05 20:05:16] 2025-10-05 18:04:52,051 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-05 20:05:16] 2025-10-05 18:05:06,056 | INFO     | [monitor] cgroup control has ended
[2025-10-05 20:05:16] 2025-10-05 18:05:07,357 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139683115063104)>', '<ExcThread(monitor, started 139682887800576)>']
[2025-10-05 20:05:16] 2025-10-05 18:05:08,135 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-05 20:05:16] 2025-10-05 18:05:08,135 | INFO     | [monitor] control thread has ended
[2025-10-05 20:05:16] 2025-10-05 18:05:12,382 | INFO     | all workflow threads have been joined
[2025-10-05 20:05:16] 2025-10-05 18:05:12,382 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-05 20:05:16] 2025-10-05 18:05:12,383 | INFO     | traces error code: 0
[2025-10-05 20:05:16] 2025-10-05 18:05:12,383 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-05 20:05:16] 2025-10-05 18:05:12,784 [wrapper] ==== pilot stdout END ====
[2025-10-05 20:05:16] 2025-10-05 18:05:12,839 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-05 20:05:16] 2025-10-05 18:05:12,913 [wrapper] pilotpid: 32235
[2025-10-05 20:05:16] 2025-10-05 18:05:12,982 [wrapper] Pilot exit status: 0
[2025-10-05 20:05:16] 2025-10-05 18:05:13,187 [wrapper] pandaids: 6828675375
[2025-10-05 20:05:16] 2025-10-05 18:05:13,861 [wrapper] cleanup supervisor_pilot  6867 32236
[2025-10-05 20:05:16] 2025-10-05 18:05:13,924 [wrapper] Test setup, not cleaning
[2025-10-05 20:05:16] 2025-10-05 18:05:14,005 [wrapper] apfmon messages muted
[2025-10-05 20:05:16] 2025-10-05 18:05:14,039 [wrapper] ==== wrapper stdout END ====
[2025-10-05 20:05:16] 2025-10-05 18:05:14,103 [wrapper] ==== wrapper stderr END ====
[2025-10-05 20:05:16]  *** Error codes and diagnostics ***
[2025-10-05 20:05:16]     "exeErrorCode": 0,
[2025-10-05 20:05:16]     "exeErrorDiag": "",
[2025-10-05 20:05:16]     "pilotErrorCode": 0,
[2025-10-05 20:05:16]     "pilotErrorDiag": "",
[2025-10-05 20:05:16]  *** Listing of results directory ***
[2025-10-05 20:05:16] total 418308
[2025-10-05 20:05:16] -rw-r--r--. 1 boinc boinc    552446 Oct  3 21:29 pilot3.tar.gz
[2025-10-05 20:05:16] -rwx------. 1 boinc boinc     36292 Oct  3 21:30 runpilot2-wrapper.sh
[2025-10-05 20:05:16] -rw-r--r--. 1 boinc boinc      5112 Oct  3 21:30 queuedata.json
[2025-10-05 20:05:16] -rw-r--r--. 1 boinc boinc       100 Oct  5 14:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-05 20:05:16] -rwxr-xr-x. 1 boinc boinc      7986 Oct  5 14:20 run_atlas
[2025-10-05 20:05:16] -rw-r--r--. 1 boinc boinc       105 Oct  5 14:20 job.xml
[2025-10-05 20:05:16] -rw-r--r--. 2 boinc boinc 223026235 Oct  5 14:20 EVNT.46373045._003199.pool.root.1
[2025-10-05 20:05:16] -rw-r--r--. 2 boinc boinc     15120 Oct  5 14:20 start_atlas.sh
[2025-10-05 20:05:16] drwxrwx--x. 2 boinc boinc        68 Oct  5 14:20 shared
[2025-10-05 20:05:16] -rw-r--r--. 2 boinc boinc    565610 Oct  5 14:20 input.tar.gz
[2025-10-05 20:05:16] -rw-r--r--. 1 boinc boinc         0 Oct  5 14:20 boinc_lockfile
[2025-10-05 20:05:16] -rw-r--r--. 1 boinc boinc      2538 Oct  5 14:21 pandaJob.out
[2025-10-05 20:05:16] -rw-------. 1 boinc boinc    973974 Oct  5 14:23 agis_schedconf.cvmfs.json
[2025-10-05 20:05:16] drwx------. 4 boinc boinc      4096 Oct  5 14:23 pilot3
[2025-10-05 20:05:16] -rw-r--r--. 1 boinc boinc      6398 Oct  5 17:06 init_data.xml
[2025-10-05 20:05:16] -rw-------. 1 boinc boinc 194936640 Oct  5 20:01 HITS.46373048._096168.pool.root.1
[2025-10-05 20:05:16] -rw-r--r--. 1 boinc boinc       531 Oct  5 20:01 boinc_task_state.xml
[2025-10-05 20:05:16] -rw-------. 1 boinc boinc      1016 Oct  5 20:02 memory_monitor_summary.json
[2025-10-05 20:05:16] -rw-------. 1 boinc boinc   1560401 Oct  5 20:02 agis_ddmendpoints.agis.ALL.json
[2025-10-05 20:05:16] -rw-------. 1 boinc boinc    541876 Oct  5 20:02 log.46373048._096168.job.log.tgz.1
[2025-10-05 20:05:16] -rw-------. 1 boinc boinc      7776 Oct  5 20:04 heartbeat.json
[2025-10-05 20:05:16] -rw-r--r--. 1 boinc boinc      8192 Oct  5 20:04 boinc_mmap_file
[2025-10-05 20:05:16] -rw-r--r--. 1 boinc boinc        28 Oct  5 20:04 wrapper_checkpoint.txt
[2025-10-05 20:05:16] -rw-------. 1 boinc boinc        95 Oct  5 20:04 pilot_heartbeat.json
[2025-10-05 20:05:16] -rw-------. 1 boinc boinc      5071 Oct  5 20:05 pilotlog.txt
[2025-10-05 20:05:16] -rw-------. 1 boinc boinc   2717670 Oct  5 20:05 log.46373048._096168.job.log.1
[2025-10-05 20:05:16] -rw-------. 1 boinc boinc       357 Oct  5 20:05 output.list
[2025-10-05 20:05:16] -rw-r--r--. 1 boinc boinc       620 Oct  5 20:05 runtime_log
[2025-10-05 20:05:16] -rw-------. 1 boinc boinc   3276800 Oct  5 20:05 result.tar.gz
[2025-10-05 20:05:16] -rw-r--r--. 1 boinc boinc      8717 Oct  5 20:05 runtime_log.err
[2025-10-05 20:05:16] -rw-------. 1 boinc boinc       656 Oct  5 20:05 8czLDm7e0O8n9Rq4apOajLDm4fhM0noT9bVof3QYDmI5BMDmj8bT0n.diag
[2025-10-05 20:05:16] -rw-r--r--. 1 boinc boinc     20822 Oct  5 20:05 stderr.txt
[2025-10-05 20:05:16] HITS file was successfully produced:
[2025-10-05 20:05:16] -rw-------. 1 boinc boinc 194936640 Oct  5 20:01 shared/HITS.pool.root.1
[2025-10-05 20:05:16]  *** Contents of shared directory: ***
[2025-10-05 20:05:16] total 411940
[2025-10-05 20:05:16] -rw-r--r--. 2 boinc boinc 223026235 Oct  5 14:20 ATLAS.root_0
[2025-10-05 20:05:16] -rw-r--r--. 2 boinc boinc     15120 Oct  5 14:20 start_atlas.sh
[2025-10-05 20:05:16] -rw-r--r--. 2 boinc boinc    565610 Oct  5 14:20 input.tar.gz
[2025-10-05 20:05:16] -rw-------. 1 boinc boinc 194936640 Oct  5 20:01 HITS.pool.root.1
[2025-10-05 20:05:16] -rw-------. 1 boinc boinc   3276800 Oct  5 20:05 result.tar.gz
20:05:17 (28280): run_atlas exited; CPU time 68441.796691
20:05:17 (28280): called boinc_finish(0)

</stderr_txt>
]]>

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