Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-07 06:16:54 (7368): vboxwrapper version 26210
2025-10-07 06:16:54 (7368): BOINC client version: 8.2.4
2025-10-07 06:16:55 (7368): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-10-07 06:16:55 (7368): Successfully copied 'init_data.xml' to the shared directory.
2025-10-07 06:16:55 (7368): Create VM. (boinc_10ba4dd6a9c3b888, slot#10)
2025-10-07 06:16:56 (7368): Setting Memory Size for VM. (4800MB)
2025-10-07 06:16:56 (7368): Setting CPU Count for VM. (8)
2025-10-07 06:16:56 (7368): Setting Chipset Options for VM.
2025-10-07 06:16:57 (7368): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-07 06:16:57 (7368): Setting Boot Options for VM.
2025-10-07 06:16:57 (7368): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-07 06:16:58 (7368): Enabling VM Network Access.
2025-10-07 06:16:58 (7368): Disabling USB Support for VM.
2025-10-07 06:16:58 (7368): Disabling COM Port Support for VM.
2025-10-07 06:16:58 (7368): Disabling LPT Port Support for VM.
2025-10-07 06:16:59 (7368): Disabling Audio Support for VM.
2025-10-07 06:16:59 (7368): Disabling Clipboard Support for VM.
2025-10-07 06:16:59 (7368): Disabling Drag and Drop Support for VM.
2025-10-07 06:16:59 (7368): Adding storage controller(s) to VM.
2025-10-07 06:17:00 (7368): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-07 06:17:00 (7368): Adding VirtualBox Guest Additions to VM.
2025-10-07 06:17:00 (7368): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-07 06:17:01 (7368): forwarding host port 50498 to guest port 80
2025-10-07 06:17:01 (7368): Enabling remote desktop for VM.
2025-10-07 06:17:01 (7368): Enabling shared directory for VM.
2025-10-07 06:17:02 (7368): Starting VM using VBoxManage interface. (boinc_10ba4dd6a9c3b888, slot#10)
2025-10-07 06:17:07 (7368): Successfully started VM. (PID = '1240')
2025-10-07 06:17:07 (7368): Reporting VM Process ID to BOINC.
2025-10-07 06:17:07 (7368): Guest Log: BIOS: VirtualBox 7.1.6
2025-10-07 06:17:07 (7368): Guest Log: CPUID EDX: 0x178bfbff
2025-10-07 06:17:07 (7368): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-07 06:17:07 (7368): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-07 06:17:07 (7368): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-07 06:17:07 (7368): Detected: Web Application Enabled (http://localhost:50498)
2025-10-07 06:17:07 (7368): Detected: Remote Desktop Enabled (localhost:50499)
2025-10-07 06:17:07 (7368): Preference change detected
2025-10-07 06:17:07 (7368): Setting CPU throttle for VM. (100%)
2025-10-07 06:17:07 (7368): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-07 06:17:09 (7368): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-07 06:17:09 (7368): Guest Log: BIOS: Booting from Hard Disk...
2025-10-07 06:17:12 (7368): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-07 06:17:12 (7368): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-07 06:17:12 (7368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-07 06:17:12 (7368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-07 06:17:12 (7368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-07 06:17:12 (7368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-07 06:17:12 (7368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-07 06:17:12 (7368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-07 06:17:12 (7368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-07 06:17:12 (7368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-07 06:17:12 (7368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-07 06:17:12 (7368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-07 06:17:12 (7368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-07 06:17:12 (7368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-07 06:17:12 (7368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-07 06:17:12 (7368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-07 06:17:12 (7368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-07 06:17:12 (7368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-07 06:17:12 (7368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-07 06:17:12 (7368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-07 06:17:12 (7368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-07 06:17:12 (7368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-07 06:17:12 (7368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-07 06:17:12 (7368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-07 06:17:12 (7368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-07 06:17:12 (7368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-07 06:17:12 (7368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-07 06:17:12 (7368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-07 06:17:12 (7368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-07 06:17:12 (7368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-07 06:17:12 (7368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-07 06:17:12 (7368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-07 06:17:18 (7368): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-07 06:17:18 (7368): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-07 06:17:22 (7368): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-07 06:17:22 (7368): Guest Log: 00:00:00.000066 main     Log opened 2025-10-07T06:17:20.028034000Z
2025-10-07 06:17:22 (7368): Guest Log: 00:00:00.000132 main     OS Product: Linux
2025-10-07 06:17:22 (7368): Guest Log: 00:00:00.000154 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-07 06:17:22 (7368): Guest Log: 00:00:00.000170 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-07 06:17:22 (7368): Guest Log: 00:00:00.000186 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-07 06:17:22 (7368): Guest Log: 00:00:00.000186 main     Process ID: 1378
2025-10-07 06:17:22 (7368): Guest Log: 00:00:00.000186 main     Package type: LINUX_64BITS_GENERIC
2025-10-07 06:17:22 (7368): Guest Log: 00:00:00.000694 main     5.2.32 r132073 started. Verbose level = 0
2025-10-07 06:17:22 (7368): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-07 06:17:22 (7368): Guest Log: [INFO] Mounting shared directory
2025-10-07 06:17:22 (7368): Guest Log: [INFO] Checking for init_data.xml
2025-10-07 06:17:26 (7368): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-07 06:17:26 (7368): Guest Log: [INFO] Detected branch: prod
2025-10-07 06:17:26 (7368): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-07 06:17:26 (7368): Guest Log: Copying input files
2025-10-07 06:17:27 (7368): Guest Log: Copied input files into RunAtlas.
2025-10-07 06:17:27 (7368): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-07 06:17:27 (7368): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-07 06:17:27 (7368): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-07 06:17:27 (7368): Guest Log: Further information can be found at the LHC@home message board.
2025-10-07 06:17:32 (7368): Guest Log: 00:00:10.006742 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 817 302 000ns (GuestNow=1 759 810 651 212 184 000 ns GuestLast=1 759 817 840 029 486 000 ns fSetTimeLastLoop=true )
2025-10-07 06:17:36 (7368): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-07 06:17:36 (7368): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-07 06:17:36 (7368): Guest Log: 2.6.3.0 1655 0 30196 151424 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-07 06:17:36 (7368): Guest Log: copied the webapp to /var/www
2025-10-07 06:17:36 (7368): Guest Log: ATHENA_PROC_NUMBER=8
2025-10-07 06:17:36 (7368): Guest Log: ATHENA_CORE_NUMBER=8
2025-10-07 06:17:36 (7368): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-07 06:17:37 (7368): Guest Log:  *** Starting ATLAS job. (PandaID=6829589836 taskID=46376905) ***
2025-10-07 07:11:36 (7368): VM state change detected. (old = 'running', new = 'paused')
2025-10-07 18:45:23 (7368): VM state change detected. (old = 'paused', new = 'running')
2025-10-07 18:45:29 (7368): Guest Log: 00:54:18.581392 timesync vgsvcTimeSyncWorker: Radical host time change: 41 693 860 000 000ns (HostNow=1 759 855 525 384 000 000 ns HostLast=1 759 813 831 524 000 000 ns)
2025-10-07 18:45:39 (7368): Guest Log: 00:54:28.583934 timesync vgsvcTimeSyncWorker: Radical guest time change: 41 635 604 582 000ns (GuestNow=1 759 855 535 388 988 000 ns GuestLast=1 759 813 899 784 406 000 ns fSetTimeLastLoop=true )
2025-10-07 19:25:34 (7368): Guest Log:  *** Job finished ***
2025-10-07 19:25:34 (7368): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-07 19:25:34 (7368): Guest Log: 2025-10-07 17:25:17,342 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-07 19:25:34 (7368): Guest Log: 2025-10-07 17:25:17,342 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-07 19:25:34 (7368): Guest Log: 2025-10-07 17:25:24,162 | INFO     | [monitor] cgroup control has ended
2025-10-07 19:25:34 (7368): Guest Log: 2025-10-07 17:25:24,413 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140447765243712)>', '<ExcThread(monitor, started 140446948902656)>']
2025-10-07 19:25:34 (7368): Guest Log: 2025-10-07 17:25:25,396 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-07 19:25:34 (7368): Guest Log: 2025-10-07 17:25:25,397 | INFO     | [monitor] control thread has ended
2025-10-07 19:25:34 (7368): Guest Log: 2025-10-07 17:25:29,419 | INFO     | all workflow threads have been joined
2025-10-07 19:25:34 (7368): Guest Log: 2025-10-07 17:25:29,419 | INFO     | end of generic workflow (traces error code: 0)
2025-10-07 19:25:34 (7368): Guest Log: 2025-10-07 17:25:29,419 | INFO     | traces error code: 0
2025-10-07 19:25:34 (7368): Guest Log: 2025-10-07 17:25:29,419 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-07 19:25:34 (7368): Guest Log: 2025-10-07 17:25:29,484 [wrapper] ==== pilot stdout END ====
2025-10-07 19:25:34 (7368): Guest Log: 2025-10-07 17:25:29,488 [wrapper] ==== wrapper stdout RESUME ====
2025-10-07 19:25:34 (7368): Guest Log: 2025-10-07 17:25:29,491 [wrapper] pilotpid: 6091
2025-10-07 19:25:34 (7368): Guest Log: 2025-10-07 17:25:29,494 [wrapper] Pilot exit status: 0
2025-10-07 19:25:34 (7368): Guest Log: 2025-10-07 17:25:29,560 [wrapper] pandaids: 6829589836
2025-10-07 19:25:34 (7368): Guest Log: 2025-10-07 17:25:29,580 [wrapper] cleanup supervisor_pilot  4207 6092
2025-10-07 19:25:34 (7368): Guest Log: 2025-10-07 17:25:29,584 [wrapper] Test setup, not cleaning
2025-10-07 19:25:34 (7368): Guest Log: 2025-10-07 17:25:29,589 [wrapper] apfmon messages muted
2025-10-07 19:25:34 (7368): Guest Log: 2025-10-07 17:25:29,592 [wrapper] ==== wrapper stdout END ====
2025-10-07 19:25:34 (7368): Guest Log: 2025-10-07 17:25:29,596 [wrapper] ==== wrapper stderr END ====
2025-10-07 19:25:34 (7368): Guest Log:  *** Error codes and diagnostics ***
2025-10-07 19:25:34 (7368): Guest Log:     "exeErrorCode": 0,
2025-10-07 19:25:34 (7368): Guest Log:     "exeErrorDiag": "",
2025-10-07 19:25:34 (7368): Guest Log:     "pilotErrorCode": 0,
2025-10-07 19:25:34 (7368): Guest Log:     "pilotErrorDiag": "",
2025-10-07 19:25:34 (7368): Guest Log:  *** Listing of results directory ***
2025-10-07 19:25:34 (7368): Guest Log: total 182684
2025-10-07 19:25:34 (7368): Guest Log: -rw-r--r--. 1 atlas atlas    552446 Oct  4 11:03 pilot3.tar.gz
2025-10-07 19:25:34 (7368): Guest Log: -rwx------. 1 atlas atlas     36292 Oct  4 11:15 runpilot2-wrapper.sh
2025-10-07 19:25:34 (7368): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct  4 11:15 queuedata.json
2025-10-07 19:25:34 (7368): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct  7 04:17 start_atlas.sh
2025-10-07 19:25:34 (7368): Guest Log: -rwxr-xr-x. 1 atlas atlas    565592 Oct  7 04:17 input.tar.gz
2025-10-07 19:25:34 (7368): Guest Log: -rwxr-xr-x. 1 atlas atlas      8953 Oct  7 04:17 init_data.xml
2025-10-07 19:25:34 (7368): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct  7 04:17 EVNT.46376901._002095.pool.root.1 -> /data/./ATLAS.root_0
2025-10-07 19:25:34 (7368): Guest Log: -rw-r--r--. 1 atlas atlas      2517 Oct  7 04:17 pandaJob.out
2025-10-07 19:25:34 (7368): Guest Log: -rw-------. 1 atlas atlas    974984 Oct  7 04:18 agis_schedconf.cvmfs.json
2025-10-07 19:25:34 (7368): Guest Log: drwx------. 4 atlas atlas      4096 Oct  7 04:18 pilot3
2025-10-07 19:25:34 (7368): Guest Log: -rw-------. 1 atlas atlas 181096195 Oct  7 17:24 HITS.46376905._058378.pool.root.1
2025-10-07 19:25:34 (7368): Guest Log: -rw-------. 1 atlas atlas      1025 Oct  7 17:24 memory_monitor_summary.json
2025-10-07 19:25:34 (7368): Guest Log: -rw-------. 1 atlas atlas   1560401 Oct  7 17:24 agis_ddmendpoints.agis.ALL.json
2025-10-07 19:25:34 (7368): Guest Log: -rw-------. 1 atlas atlas    322170 Oct  7 17:24 log.46376905._058378.job.log.tgz.1
2025-10-07 19:25:34 (7368): Guest Log: -rw-------. 1 atlas atlas      7748 Oct  7 17:24 heartbeat.json
2025-10-07 19:25:34 (7368): Guest Log: -rw-------. 1 atlas atlas        98 Oct  7 17:25 pilot_heartbeat.json
2025-10-07 19:25:34 (7368): Guest Log: -rw-------. 1 atlas atlas      4805 Oct  7 17:25 pilotlog.txt
2025-10-07 19:25:34 (7368): Guest Log: -rw-------. 1 atlas atlas    756587 Oct  7 17:25 log.46376905._058378.job.log.1
2025-10-07 19:25:34 (7368): Guest Log: -rw-------. 1 atlas atlas       357 Oct  7 17:25 output.list
2025-10-07 19:25:34 (7368): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct  7 17:25 runtime_log
2025-10-07 19:25:34 (7368): Guest Log: -rw-------. 1 atlas atlas   1095680 Oct  7 17:25 result.tar.gz
2025-10-07 19:25:34 (7368): Guest Log: -rw-r--r--. 1 atlas atlas      8606 Oct  7 17:25 runtime_log.err
2025-10-07 19:25:34 (7368): Guest Log: -rw-------. 1 atlas atlas       646 Oct  7 17:25 eHGMDm2PFP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmk9KNDmq22mwm.diag
2025-10-07 19:25:34 (7368): Guest Log: Looking for outputfile HITS.46376905._058378.pool.root.1
2025-10-07 19:25:34 (7368): Guest Log: HITS file was successfully produced
2025-10-07 19:25:34 (7368): Guest Log: -rw-------. 1 atlas atlas 181096195 Oct  7 17:24 /home/atlas/RunAtlas/HITS.46376905._058378.pool.root.1
2025-10-07 19:25:35 (7368): Guest Log: Successfully finished the ATLAS job!
2025-10-07 19:25:35 (7368): Guest Log: Copying the results back to the shared directory!
2025-10-07 19:25:35 (7368): Guest Log:  *** Contents of shared directory: ***
2025-10-07 19:25:35 (7368): Guest Log: total 385100
2025-10-07 19:25:35 (7368): Guest Log: -rwxrwxrwx. 1 root root 211547119 Oct  7 04:16 ATLAS.root_0
2025-10-07 19:25:35 (7368): Guest Log: -rwxrwxrwx. 1 root root 181096195 Oct  7  2025 HITS.pool.root.1
2025-10-07 19:25:35 (7368): Guest Log: -rwxrwxrwx. 1 root root      8953 Oct  7 04:16 init_data.xml
2025-10-07 19:25:35 (7368): Guest Log: -rwxrwxrwx. 1 root root    565592 Oct  4 17:48 input.tar.gz
2025-10-07 19:25:35 (7368): Guest Log: -rwxrwxrwx. 1 root root   1095680 Oct  7  2025 result.tar.gz
2025-10-07 19:25:35 (7368): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct  4 17:48 start_atlas.sh
2025-10-07 19:25:35 (7368): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-07 19:25:35 (7368): VM Completion File Detected.
2025-10-07 19:25:35 (7368): Powering off VM.
2025-10-07 19:25:36 (7368): Successfully stopped VM.
2025-10-07 19:25:36 (7368): Deregistering VM. (boinc_10ba4dd6a9c3b888, slot#10)
2025-10-07 19:25:36 (7368): Removing network bandwidth throttle group from VM.
2025-10-07 19:25:37 (7368): Removing VM from VirtualBox.
2025-10-07 19:25:42 (7368): called boinc_finish(0)

</stderr_txt>
]]>

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