Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:34:24 (3580137): wrapper (7.7.26015): starting
03:34:24 (3580137): wrapper: running run_atlas (--nthreads 4)
[2025-10-05 03:34:24] Arguments: --nthreads 4
[2025-10-05 03:34:24] Threads: 4
[2025-10-05 03:34:24] Checking for CVMFS
[2025-10-05 03:34:24] No cvmfs_config command found, will try listing directly
[2025-10-05 03:34:24] CVMFS is ok
[2025-10-05 03:34:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-05 03:34:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-05 03:34:24] Further information can be found at the LHC@home message board.
[2025-10-05 03:34:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-05 03:34:24] Checking for apptainer binary...
[2025-10-05 03:34:24] which: no apptainer in ((null))
[2025-10-05 03:34:24] apptainer is not installed, using version from CVMFS
[2025-10-05 03:34:24] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-05 03:34:24] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot56/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2025-10-05 03:34:24] apptainer works
[2025-10-05 03:34:24] Set ATHENA_PROC_NUMBER=4
[2025-10-05 03:34:24] Set ATHENA_CORE_NUMBER=4
[2025-10-05 03:34:24] Starting ATLAS job with PandaID=6829086907
[2025-10-05 03:34:24] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot56/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
05:17:23 (4165364): wrapper (7.7.26015): starting
05:17:23 (4165364): wrapper: running run_atlas (--nthreads 4)
[2025-10-05 05:17:23] Arguments: --nthreads 4
[2025-10-05 05:17:23] Threads: 4
[2025-10-05 05:17:23] This job has been restarted, cleaning up previous attempt
[2025-10-05 05:17:23] Checking for CVMFS
[2025-10-05 05:17:23] No cvmfs_config command found, will try listing directly
[2025-10-05 05:17:23] CVMFS is ok
[2025-10-05 05:17:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-05 05:17:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-05 05:17:23] Further information can be found at the LHC@home message board.
[2025-10-05 05:17:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-05 05:17:23] Checking for apptainer binary...
[2025-10-05 05:17:23] which: no apptainer in ((null))
[2025-10-05 05:17:23] apptainer is not installed, using version from CVMFS
[2025-10-05 05:17:23] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-05 05:17:24] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot56/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2025-10-05 05:17:24] apptainer works
[2025-10-05 05:17:24] Set ATHENA_PROC_NUMBER=4
[2025-10-05 05:17:24] Set ATHENA_CORE_NUMBER=4
[2025-10-05 05:17:24] Starting ATLAS job with PandaID=6829086907
[2025-10-05 05:17:24] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot56/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-05 07:42:02]  *** The last 200 lines of the pilot log: ***
[2025-10-05 07:42:02] 2025-10-05 05:41:29,235 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-05 07:42:02] 2025-10-05 05:41:29,235 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-05 07:42:02] 2025-10-05 05:41:29,237 | INFO     | fitting pss+swap vs Time
[2025-10-05 07:42:02] 2025-10-05 05:41:29,238 | INFO     | sum of square deviations: 869188390.0
[2025-10-05 07:42:02] 2025-10-05 05:41:29,238 | INFO     | sum of deviations: 10599397515.0
[2025-10-05 07:42:02] 2025-10-05 05:41:29,238 | INFO     | mean x: 1759638559.0
[2025-10-05 07:42:02] 2025-10-05 05:41:29,239 | INFO     | mean y: 2326411.574468085
[2025-10-05 07:42:02] 2025-10-05 05:41:29,239 | INFO     | -- intersect: -21455747331.86656
[2025-10-05 07:42:02] 2025-10-05 05:41:29,239 | INFO     | intersect: -21455747331.86656
[2025-10-05 07:42:02] 2025-10-05 05:41:29,239 | INFO     | chi2: 1.1909492412729064
[2025-10-05 07:42:02] 2025-10-05 05:41:29,239 | INFO     | sum of square deviations: 779958810.0
[2025-10-05 07:42:02] 2025-10-05 05:41:29,240 | INFO     | sum of deviations: 10325037906.5
[2025-10-05 07:42:02] 2025-10-05 05:41:29,240 | INFO     | mean x: 1759638406.5
[2025-10-05 07:42:02] 2025-10-05 05:41:29,240 | INFO     | mean y: 2325942.3897058824
[2025-10-05 07:42:02] 2025-10-05 05:41:29,240 | INFO     | -- intersect: -23291639092.56612
[2025-10-05 07:42:02] 2025-10-05 05:41:29,240 | INFO     | intersect: -23291639092.56612
[2025-10-05 07:42:02] 2025-10-05 05:41:29,240 | INFO     | chi2: 1.1921963598299996
[2025-10-05 07:42:02] 2025-10-05 05:41:29,240 | INFO     | current chi2=1.1921963598299996 (change=-0.10471634842810855 %)
[2025-10-05 07:42:02] 2025-10-05 05:41:29,241 | INFO     | right removable region: 135
[2025-10-05 07:42:02] 2025-10-05 05:41:29,241 | INFO     | sum of square deviations: 779958810.0
[2025-10-05 07:42:02] 2025-10-05 05:41:29,242 | INFO     | sum of deviations: -4965081732.5
[2025-10-05 07:42:02] 2025-10-05 05:41:29,242 | INFO     | mean x: 1759638711.5
[2025-10-05 07:42:02] 2025-10-05 05:41:29,242 | INFO     | mean y: 2352481.8602941176
[2025-10-05 07:42:02] 2025-10-05 05:41:29,242 | INFO     | -- intersect: 11203905577.040394
[2025-10-05 07:42:02] 2025-10-05 05:41:29,242 | INFO     | intersect: 11203905577.040394
[2025-10-05 07:42:02] 2025-10-05 05:41:29,242 | INFO     | chi2: 0.012928703032310558
[2025-10-05 07:42:02] 2025-10-05 05:41:29,242 | INFO     | current chi2=0.012928703032310558 (change=98.91442031412755 %)
[2025-10-05 07:42:02] 2025-10-05 05:41:29,243 | INFO     | sum of square deviations: 697054930.0
[2025-10-05 07:42:02] 2025-10-05 05:41:29,243 | INFO     | sum of deviations: -5567644337.999993
[2025-10-05 07:42:02] 2025-10-05 05:41:29,243 | INFO     | mean x: 1759638864.0
[2025-10-05 07:42:02] 2025-10-05 05:41:29,244 | INFO     | mean y: 2353558.320610687
[2025-10-05 07:42:02] 2025-10-05 05:41:29,244 | INFO     | -- intersect: 14057262198.123703
[2025-10-05 07:42:02] 2025-10-05 05:41:29,244 | INFO     | intersect: 14057262198.123703
[2025-10-05 07:42:02] 2025-10-05 05:41:29,244 | INFO     | chi2: 0.007493246142626454
[2025-10-05 07:42:02] 2025-10-05 05:41:29,244 | INFO     | current chi2=0.007493246142626454 (change=42.041780030836584 %)
[2025-10-05 07:42:02] 2025-10-05 05:41:29,244 | INFO     | sum of square deviations: 620244187.5
[2025-10-05 07:42:02] 2025-10-05 05:41:29,245 | INFO     | sum of deviations: -5358539388.0
[2025-10-05 07:42:02] 2025-10-05 05:41:29,245 | INFO     | mean x: 1759639016.5
[2025-10-05 07:42:02] 2025-10-05 05:41:29,245 | INFO     | mean y: 2353140.1428571427
[2025-10-05 07:42:02] 2025-10-05 05:41:29,245 | INFO     | -- intersect: 15204583436.862617
[2025-10-05 07:42:02] 2025-10-05 05:41:29,245 | INFO     | intersect: 15204583436.862617
[2025-10-05 07:42:02] 2025-10-05 05:41:29,245 | INFO     | chi2: 0.007061506123221997
[2025-10-05 07:42:02] 2025-10-05 05:41:29,245 | INFO     | current chi2=0.007061506123221997 (change=5.761722105302791 %)
[2025-10-05 07:42:02] 2025-10-05 05:41:29,245 | INFO     | left removable region: 30
[2025-10-05 07:42:02] 2025-10-05 05:41:29,246 | INFO     | sum of square deviations: 358927660.0
[2025-10-05 07:42:02] 2025-10-05 05:41:29,246 | INFO     | sum of deviations: -2938536225.0
[2025-10-05 07:42:02] 2025-10-05 05:41:29,246 | INFO     | mean x: 1759639291.0
[2025-10-05 07:42:02] 2025-10-05 05:41:29,246 | INFO     | mean y: 2348251.0761904763
[2025-10-05 07:42:02] 2025-10-05 05:41:29,246 | INFO     | -- intersect: 14408492930.861572
[2025-10-05 07:42:02] 2025-10-05 05:41:29,246 | INFO     | intersect: 14408492930.861572
[2025-10-05 07:42:02] 2025-10-05 05:41:29,247 | INFO     | chi2: 0.005714357205480831
[2025-10-05 07:42:02] 2025-10-05 05:41:29,247 | INFO     | -- intersect: 14408492930.861572
[2025-10-05 07:42:02] 2025-10-05 05:41:29,247 | INFO     | current memory leak: -8.19 B/s (using 105 data points, chi2=0.01)
[2025-10-05 07:42:02] 2025-10-05 05:41:29,247 | INFO     | could have reported an average CPU frequency of 2703 MHz (8 samples)
[2025-10-05 07:42:02] 2025-10-05 05:41:29,247 | INFO     | ..............................
[2025-10-05 07:42:02] 2025-10-05 05:41:29,247 | INFO     | . Timing measurements:
[2025-10-05 07:42:02] 2025-10-05 05:41:29,247 | INFO     | . get job = 0 s
[2025-10-05 07:42:02] 2025-10-05 05:41:29,248 | INFO     | . initial setup = 1 s
[2025-10-05 07:42:02] 2025-10-05 05:41:29,248 | INFO     | . payload setup = 8 s
[2025-10-05 07:42:02] 2025-10-05 05:41:29,248 | INFO     | . stage-in = 0 s
[2025-10-05 07:42:02] 2025-10-05 05:41:29,248 | INFO     | . payload execution = 8591 s
[2025-10-05 07:42:02] 2025-10-05 05:41:29,248 | INFO     | . stage-out = 1 s
[2025-10-05 07:42:02] 2025-10-05 05:41:29,248 | INFO     | . log creation = 0 s
[2025-10-05 07:42:02] 2025-10-05 05:41:29,248 | INFO     | ..............................
[2025-10-05 07:42:02] 2025-10-05 05:41:29,334 | INFO     | 
[2025-10-05 07:42:02] 2025-10-05 05:41:29,334 | INFO     | job summary report
[2025-10-05 07:42:02] 2025-10-05 05:41:29,334 | INFO     | --------------------------------------------------
[2025-10-05 07:42:02] 2025-10-05 05:41:29,334 | INFO     | PanDA job id: 6829086907
[2025-10-05 07:42:02] 2025-10-05 05:41:29,335 | INFO     | task id: 46376905
[2025-10-05 07:42:02] 2025-10-05 05:41:29,335 | INFO     | errors: (none)
[2025-10-05 07:42:02] 2025-10-05 05:41:29,335 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-05 07:42:02] 2025-10-05 05:41:29,335 | INFO     | pilot state: finished 
[2025-10-05 07:42:02] 2025-10-05 05:41:29,335 | INFO     | transexitcode: 0
[2025-10-05 07:42:02] 2025-10-05 05:41:29,335 | INFO     | exeerrorcode: 0
[2025-10-05 07:42:02] 2025-10-05 05:41:29,335 | INFO     | exeerrordiag: 
[2025-10-05 07:42:02] 2025-10-05 05:41:29,335 | INFO     | exitcode: 0
[2025-10-05 07:42:02] 2025-10-05 05:41:29,335 | INFO     | exitmsg: OK
[2025-10-05 07:42:02] 2025-10-05 05:41:29,335 | INFO     | cpuconsumptiontime: 32461 s
[2025-10-05 07:42:02] 2025-10-05 05:41:29,335 | INFO     | nevents: 400
[2025-10-05 07:42:02] 2025-10-05 05:41:29,336 | INFO     | neventsw: 0
[2025-10-05 07:42:02] 2025-10-05 05:41:29,336 | INFO     | pid: 4181415
[2025-10-05 07:42:02] 2025-10-05 05:41:29,336 | INFO     | pgrp: 4181415
[2025-10-05 07:42:02] 2025-10-05 05:41:29,336 | INFO     | corecount: 4
[2025-10-05 07:42:02] 2025-10-05 05:41:29,336 | INFO     | event service: False
[2025-10-05 07:42:02] 2025-10-05 05:41:29,336 | INFO     | sizes: {0: 2348656, 1: 2348855, 7: 2349117, 11: 2349145, 8603: 2377559, 8605: 2386579, 8607: 2386763, 8615: 2386957}
[2025-10-05 07:42:02] 2025-10-05 05:41:29,336 | INFO     | --------------------------------------------------
[2025-10-05 07:42:02] 2025-10-05 05:41:29,336 | INFO     | 
[2025-10-05 07:42:02] 2025-10-05 05:41:29,336 | INFO     | executing command: ls -lF /scratch/boinc/var/slot56/slots/0
[2025-10-05 07:42:02] 2025-10-05 05:41:29,364 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-05 07:42:02] 2025-10-05 05:41:29,364 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-05 07:42:02] 2025-10-05 05:41:29,364 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-05 07:42:02] 2025-10-05 05:41:29,364 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-05 07:42:02] 2025-10-05 05:41:29,365 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-05 07:42:02] 2025-10-05 05:41:29,365 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-05 07:42:02] 2025-10-05 05:41:29,365 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-05 07:42:02] 2025-10-05 05:41:29,365 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-05 07:42:02] 2025-10-05 05:41:29,365 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-05 07:42:02] 2025-10-05 05:41:29,365 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-05 07:42:02] 2025-10-05 05:41:29,365 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-05 07:42:02] 2025-10-05 05:41:29,365 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-05 07:42:02] 2025-10-05 05:41:29,365 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-05 07:42:02] 2025-10-05 05:41:29,365 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-05 07:42:02] 2025-10-05 05:41:29,365 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-05 07:42:02] 2025-10-05 05:41:29,365 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-05 07:42:02] 2025-10-05 05:41:29,365 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-05 07:42:02] 2025-10-05 05:41:29,365 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-05 07:42:02] 2025-10-05 05:41:29,366 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-05 07:42:02] 2025-10-05 05:41:29,366 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-05 07:42:02] 2025-10-05 05:41:29,366 | INFO     | job 6829086907 has completed (purged errors)
[2025-10-05 07:42:02] 2025-10-05 05:41:29,366 | INFO     | overall cleanup function is called
[2025-10-05 07:42:02] 2025-10-05 05:41:30,375 | INFO     | --- collectZombieJob: --- 10, [4181415]
[2025-10-05 07:42:02] 2025-10-05 05:41:30,375 | INFO     | zombie collector waiting for pid 4181415
[2025-10-05 07:42:02] 2025-10-05 05:41:30,375 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-05 07:42:02] 2025-10-05 05:41:30,375 | INFO     | collected zombie processes
[2025-10-05 07:42:02] 2025-10-05 05:41:30,375 | INFO     | will attempt to kill all subprocesses of pid=4181415
[2025-10-05 07:42:02] 2025-10-05 05:41:31,108 | INFO     | process IDs to be killed: [4181415] (in reverse order)
[2025-10-05 07:42:02] 2025-10-05 05:41:31,361 | WARNING  | found no corresponding commands to process id(s)
[2025-10-05 07:42:02] 2025-10-05 05:41:31,361 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-05 07:42:02] 2025-10-05 05:41:31,387 | INFO     | did not find any defunct processes belonging to 4181415
[2025-10-05 07:42:02] 2025-10-05 05:41:31,410 | INFO     | did not find any defunct processes belonging to 4181415
[2025-10-05 07:42:02] 2025-10-05 05:41:31,411 | INFO     | ready for new job
[2025-10-05 07:42:02] 2025-10-05 05:41:31,411 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-05 07:42:02] 2025-10-05 05:41:31,413 | INFO     | ***************************************
[2025-10-05 07:42:02] 2025-10-05 05:41:31,413 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-05 07:42:02] 2025-10-05 05:41:31,413 | INFO     | ***************************************
[2025-10-05 07:42:02] 2025-10-05 05:41:31,414 | INFO     | 
[2025-10-05 07:42:02] 2025-10-05 05:41:31,422 | INFO     | architecture information:
[2025-10-05 07:42:02] 2025-10-05 05:41:31,422 | INFO     | executing command: cat /etc/os-release
[2025-10-05 07:42:02] 2025-10-05 05:41:31,446 | INFO     | cat /etc/os-release:
[2025-10-05 07:42:02] NAME="CentOS Linux"
[2025-10-05 07:42:02] VERSION="7 (Core)"
[2025-10-05 07:42:02] ID="centos"
[2025-10-05 07:42:02] ID_LIKE="rhel fedora"
[2025-10-05 07:42:02] VERSION_ID="7"
[2025-10-05 07:42:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-05 07:42:02] ANSI_COLOR="0;31"
[2025-10-05 07:42:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-05 07:42:02] HOME_URL="https://www.centos.org/"
[2025-10-05 07:42:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-05 07:42:02] 
[2025-10-05 07:42:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-05 07:42:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-05 07:42:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-05 07:42:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-05 07:42:02] 
[2025-10-05 07:42:02] 2025-10-05 05:41:31,446 | INFO     | ***************************************
[2025-10-05 07:42:02] 2025-10-05 05:41:31,949 | INFO     | executing command: df -mP /scratch/boinc/var/slot56/slots/0
[2025-10-05 07:42:02] 2025-10-05 05:41:31,973 | INFO     | sufficient remaining disk space (3338166861824 B)
[2025-10-05 07:42:02] 2025-10-05 05:41:31,974 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-05 07:42:02] 2025-10-05 05:41:31,974 | INFO     | current server update state: UPDATING_FINAL
[2025-10-05 07:42:02] 2025-10-05 05:41:31,974 | INFO     | update_server=False
[2025-10-05 07:42:02] 2025-10-05 05:41:31,974 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-05 07:42:02] 2025-10-05 05:41:31,974 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-05 07:42:02] 2025-10-05 05:41:31,974 | INFO     | aborting loop
[2025-10-05 07:42:02] 2025-10-05 05:41:32,211 | INFO     | all payload control threads have been joined
[2025-10-05 07:42:02] 2025-10-05 05:41:32,360 | INFO     | all data control threads have been joined
[2025-10-05 07:42:02] 2025-10-05 05:41:32,604 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-05 07:42:02] 2025-10-05 05:41:32,980 | INFO     | [job] retrieve thread has finished
[2025-10-05 07:42:02] 2025-10-05 05:41:32,980 | INFO     | [job] job monitor thread has finished
[2025-10-05 07:42:02] 2025-10-05 05:41:33,022 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-05 07:42:02] 2025-10-05 05:41:33,042 | INFO     | [payload] validate_post thread has finished
[2025-10-05 07:42:02] 2025-10-05 05:41:33,072 | INFO     | all job control threads have been joined
[2025-10-05 07:42:02] 2025-10-05 05:41:33,216 | INFO     | [payload] control thread has finished
[2025-10-05 07:42:02] 2025-10-05 05:41:33,243 | INFO     | [payload] validate_pre thread has finished
[2025-10-05 07:42:02] 2025-10-05 05:41:33,365 | INFO     | [data] control thread has finished
[2025-10-05 07:42:02] 2025-10-05 05:41:33,540 | INFO     | [payload] execute_payloads thread has finished
[2025-10-05 07:42:02] 2025-10-05 05:41:33,890 | INFO     | [data] copytool_in thread has finished
[2025-10-05 07:42:02] 2025-10-05 05:41:34,076 | INFO     | [job] validate thread has finished
[2025-10-05 07:42:02] 2025-10-05 05:41:34,077 | INFO     | [job] control thread has finished
[2025-10-05 07:42:02] 2025-10-05 05:41:34,321 | INFO     | [job] create_data_payload thread has finished
[2025-10-05 07:42:02] 2025-10-05 05:41:34,339 | INFO     | [payload] failed_post thread has finished
[2025-10-05 07:42:02] 2025-10-05 05:41:34,345 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-05 07:42:02] 2025-10-05 05:41:35,027 | INFO     | [data] copytool_out thread has finished
[2025-10-05 07:42:02] 2025-10-05 05:41:35,350 | INFO     | [job] queue monitor thread has finished
[2025-10-05 07:42:02] 2025-10-05 05:41:36,610 | INFO     | [data] queue_monitor thread has finished
[2025-10-05 07:42:02] 2025-10-05 05:41:42,352 | INFO     | job.realtimelogging is not enabled
[2025-10-05 07:42:02] 2025-10-05 05:41:43,357 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-05 07:42:02] 2025-10-05 05:41:50,137 | INFO     | [monitor] cgroup control has ended
[2025-10-05 07:42:02] 2025-10-05 05:41:51,869 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22667187181376)>', '<ExcThread(monitor, started 22666750707456)>']
[2025-10-05 07:42:02] 2025-10-05 05:41:56,894 | INFO     | all workflow threads have been joined
[2025-10-05 07:42:02] 2025-10-05 05:41:56,894 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-05 07:42:02] 2025-10-05 05:41:56,894 | INFO     | traces error code: 0
[2025-10-05 07:42:02] 2025-10-05 05:41:56,895 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-05 07:42:02] 2025-10-05 05:42:01,625 | INFO     | PID=4169376 has CPU usage=9.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-05 07:42:02] 2025-10-05 05:42:01,625 | INFO     | .. there are 22 such processes running
[2025-10-05 07:42:02] 2025-10-05 05:42:01,625 | INFO     | found 0 job(s) in 20 queues
[2025-10-05 07:42:02] 2025-10-05 05:42:01,625 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-05 07:42:02] 2025-10-05 05:42:01,626 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-05 07:42:02] 2025-10-05 05:42:01,626 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-05 07:42:02] 2025-10-05 05:42:01,626 | INFO     | [monitor] control thread has ended
[2025-10-05 07:42:02] 2025-10-05 05:42:01,776 [wrapper] ==== pilot stdout END ====
[2025-10-05 07:42:02] 2025-10-05 05:42:01,780 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-05 07:42:02] 2025-10-05 05:42:01,783 [wrapper] pilotpid: 4169376
[2025-10-05 07:42:02] 2025-10-05 05:42:01,787 [wrapper] Pilot exit status: 0
[2025-10-05 07:42:02] 2025-10-05 05:42:01,807 [wrapper] pandaids: 6829086907 6829086907
[2025-10-05 07:42:02] 2025-10-05 05:42:01,958 [wrapper] cleanup supervisor_pilot  657816 4169377
[2025-10-05 07:42:02] 2025-10-05 05:42:01,962 [wrapper] Test setup, not cleaning
[2025-10-05 07:42:02] 2025-10-05 05:42:01,967 [wrapper] apfmon messages muted
[2025-10-05 07:42:02] 2025-10-05 05:42:01,970 [wrapper] ==== wrapper stdout END ====
[2025-10-05 07:42:02] 2025-10-05 05:42:01,974 [wrapper] ==== wrapper stderr END ====
[2025-10-05 07:42:02]  *** Error codes and diagnostics ***
[2025-10-05 07:42:02]     "exeErrorCode": 0,
[2025-10-05 07:42:02]     "exeErrorDiag": "",
[2025-10-05 07:42:02]     "pilotErrorCode": 0,
[2025-10-05 07:42:02]     "pilotErrorDiag": "",
[2025-10-05 07:42:02]  *** Listing of results directory ***
[2025-10-05 07:42:02] total 604840
[2025-10-05 07:42:02] drwx------ 4 boinc boinc      4096 Jul 31 15:00 pilot3
[2025-10-05 07:42:02] -rw-r--r-- 1 boinc boinc    552446 Oct  4 03:41 pilot3.tar.gz
[2025-10-05 07:42:02] -rw-r--r-- 1 boinc boinc      5112 Oct  4 04:01 queuedata.json
[2025-10-05 07:42:02] -rwx------ 1 boinc boinc     36292 Oct  4 04:02 runpilot2-wrapper.sh
[2025-10-05 07:42:02] -rw-r--r-- 1 boinc boinc       100 Oct  5 03:34 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-05 07:42:02] -rwxr-xr-x 1 boinc boinc      7986 Oct  5 03:34 run_atlas
[2025-10-05 07:42:02] -rw-r--r-- 1 boinc boinc       105 Oct  5 03:34 job.xml
[2025-10-05 07:42:02] -rw-r--r-- 3 boinc boinc 216903548 Oct  5 03:34 EVNT.46376901._001786.pool.root.1
[2025-10-05 07:42:02] -rw-r--r-- 3 boinc boinc 216903548 Oct  5 03:34 ATLAS.root_0
[2025-10-05 07:42:02] -rw-r--r-- 2 boinc boinc     15120 Oct  5 03:34 start_atlas.sh
[2025-10-05 07:42:02] drwxrwx--x 2 boinc boinc      4096 Oct  5 03:34 shared
[2025-10-05 07:42:02] -rw-r--r-- 2 boinc boinc    565606 Oct  5 03:34 input.tar.gz
[2025-10-05 07:42:02] -rw-r--r-- 1 boinc boinc         0 Oct  5 03:34 boinc_lockfile
[2025-10-05 07:42:02] -rw-r--r-- 1 boinc boinc      6692 Oct  5 05:17 init_data.xml
[2025-10-05 07:42:02] -rw-r--r-- 1 boinc boinc      2519 Oct  5 05:17 pandaJob.out
[2025-10-05 07:42:02] -rw------- 1 boinc boinc    973982 Oct  5 05:17 agis_schedconf.cvmfs.json
[2025-10-05 07:42:02] -rw------- 1 boinc boinc 178570032 Oct  5 07:40 HITS.46376905._050536.pool.root.1
[2025-10-05 07:42:02] -rw-r--r-- 1 boinc boinc       529 Oct  5 07:40 boinc_task_state.xml
[2025-10-05 07:42:02] -rw------- 1 boinc boinc      1024 Oct  5 07:41 memory_monitor_summary.json
[2025-10-05 07:42:02] -rw------- 1 boinc boinc   1560401 Oct  5 07:41 agis_ddmendpoints.agis.ALL.json
[2025-10-05 07:42:02] -rw------- 1 boinc boinc    326784 Oct  5 07:41 log.46376905._050536.job.log.tgz.1
[2025-10-05 07:42:02] -rw------- 1 boinc boinc        97 Oct  5 07:41 pilot_heartbeat.json
[2025-10-05 07:42:02] -rw------- 1 boinc boinc      7777 Oct  5 07:41 heartbeat.json
[2025-10-05 07:42:02] -rw-r--r-- 1 boinc boinc      8192 Oct  5 07:42 boinc_mmap_file
[2025-10-05 07:42:02] -rw------- 1 boinc boinc       823 Oct  5 07:42 pilotlog.txt
[2025-10-05 07:42:02] -rw-r--r-- 1 boinc boinc        27 Oct  5 07:42 wrapper_checkpoint.txt
[2025-10-05 07:42:02] -rw------- 1 boinc boinc   1217489 Oct  5 07:42 log.46376905._050536.job.log.1
[2025-10-05 07:42:02] -rw------- 1 boinc boinc       357 Oct  5 07:42 output.list
[2025-10-05 07:42:02] -rw-r--r-- 1 boinc boinc       620 Oct  5 07:42 runtime_log
[2025-10-05 07:42:02] -rw------- 1 boinc boinc   1566720 Oct  5 07:42 result.tar.gz
[2025-10-05 07:42:02] -rw-r--r-- 1 boinc boinc      9146 Oct  5 07:42 runtime_log.err
[2025-10-05 07:42:02] -rw------- 1 boinc boinc       787 Oct  5 07:42 MxLODmBm6O8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmYnJNDmOvgTOo.diag
[2025-10-05 07:42:02] -rw-r--r-- 1 boinc boinc     22584 Oct  5 07:42 stderr.txt
[2025-10-05 07:42:02] HITS file was successfully produced:
[2025-10-05 07:42:02] -rw------- 1 boinc boinc 178570032 Oct  5 07:40 shared/HITS.pool.root.1
[2025-10-05 07:42:02]  *** Contents of shared directory: ***
[2025-10-05 07:42:02] total 388320
[2025-10-05 07:42:02] -rw-r--r-- 3 boinc boinc 216903548 Oct  5 03:34 ATLAS.root_0
[2025-10-05 07:42:02] -rw-r--r-- 2 boinc boinc     15120 Oct  5 03:34 start_atlas.sh
[2025-10-05 07:42:02] -rw-r--r-- 2 boinc boinc    565606 Oct  5 03:34 input.tar.gz
[2025-10-05 07:42:02] -rw------- 1 boinc boinc 178570032 Oct  5 07:40 HITS.pool.root.1
[2025-10-05 07:42:02] -rw------- 1 boinc boinc   1566720 Oct  5 07:42 result.tar.gz
07:42:03 (4165364): run_atlas exited; CPU time 32928.364846
07:42:03 (4165364): called boinc_finish(0)

</stderr_txt>
]]>

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